Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0001611

Physical Location & Seq

Genomic Coordinates Reverse (-)

37350083 .. 37359711

Gene Structure 9629 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G016330.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGAGTCCACAAGCTTCACAATGCGATTATGGTTGTATAAAGGAACATGTATCATTCATACTAGCATGGCTAGATGATCAACCAACTGGATCAGTGTTCTATGTCAGCTTTGGGAGTAGGACTGCAATGTCAAGGGAGAAAATCAGAGAGTTGGGTGAAGGCTTGGTGAGGACTGGGTTTAGGTTTCTGTGGGTCGTGAAGGATAAGAAAGTTGACATGGAAGACGATGAGAAACTGACTGAGGTGCTTGGACAGGGGTTACTGGAAAGAGTGAAGGAAAAGGGATTATTGGCAGTGAAGACGTGGCTGAACCAAGAGGAGGTATTGAGGCATCCTGCAATCGGTGGTTTATTAAGTCATTGTGGCTGGAATTCCTTGAGTGAGGCTCTGTGGAACTGTGTGCGCATATTAGCATGGCCGCAACATGGGGACCAGAAAATCAATGCCGACTTAGTGCAGAGACTTGGGCTGGGAGTGTGGGTTAAGAGTAGGGGTTGGGGTGAGGAGGAGATGGTGGTGGAAGCAGAGGATATTGTAGAGAGGGTCGAGGAGATTATGGGAAATGACACATTGAGATTGCAAGCACTGCACATTAAAGAAGAGGCTAGACTGGCAGTAGGAGATACTGGTAGTTCTACAAAGAGACTCACTGCTCTCATTGAGACATGGAAAGAGTTTCAAGTTAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0047243 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

229

Amino Acids

25.92

Weight (kDa)

5.27

Isoelectric Point (pI)

40.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UDPGT	PF00201	31 - 180	2.9e-15	UDP-glucoronosyl and UDP-glucosyl transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001611)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g47620
malus_domestica	MD16G1064500.v1.1 MD16G1276100.v1.1 MD17G1055500.v1.1
prunus_persica	Prupe.1G282300_v2.0.a1 Prupe.3G260200_v2.0.a1
pyrus_communis	pycom16g05630 pycom16g05640 pycom17g05420
rosa_chinensis	RchiOBHm_Chr2g0166721 RchiOBHm_Chr4g0438831 RchiOBHm_Chr4g0438841
rosa_laevigata	RLG00000006326 RLG00000006327 RLG00000021642
rosa_multiflora	Rmu_co8237817.1_g000001 Rmu_sc0000431.1_g000011 Rmu_sc0002181.1_g000012 Rmu_sc0002505.1_g000018 Rmu_sc0002505.1_g000020 Rmu_sc0003748.1_g000012 Rmu_sc0005433.1_g000002 Rmu_sc0007415.1_g000054 Rmu_sc0009639.1_g000019 Rmu_sc0023543.1_g000001 Rmu_sc0041865.1_g000001
rosa_roxburghii	Rroxscaffold_2G00084290 Rroxscaffold_2G00084610 Rroxscaffold_5G00379870
rosa_rugosa	Rorug02G0525100 Rorug04G0313400 Rorug04G0313400
rosa_samantha	Rh1AG297400 Rh2AG591400 Rh2BG000200 Rh2BG603100 Rh2CG574200 Rh2DG614000 Rh4AG192000 Rh4AG364400 Rh4BG375500 Rh4CG389600 Rh4DG370100 Rh4DG370200 Rh5DG208500 Rh7CG204500
rosa_wichuraiana	Rw0G007250 Rw0G016800 Rw2G049270 Rw4G016330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	127
Acc16I	TGCGCA	1 cut(s)	404
AciI	CCGC	1 cut(s)	419
AclWI	GGATC	1 cut(s)	97
AcoI	YGGCCR	1 cut(s)	416
AcsI	RAATTY	1 cut(s)	370
AfiI	CCNNNNNNNGG	3 cut(s)	319, 341, 425
AflIII	ACRYGT	1 cut(s)	46
AgsI	TTSAA	1 cut(s)	680
AjiI	CACGTC	1 cut(s)	303
AluBI	AGCT	2 cut(s)	14, 108
AluI	AGCT	2 cut(s)	14, 108
Alw26I	GTCTC	3 cut(s)	454, 637, 656
AlwI	GGATC	1 cut(s)	97
AoxI	GGCC	1 cut(s)	416
ApoI	RAATTY	1 cut(s)	370
AspLEI	GCGC	1 cut(s)	405
AspS9I	GGNCC	1 cut(s)	430
AsuHPI	GGTGA	3 cut(s)	167, 178, 512
AvaII	GGWCC	1 cut(s)	430
BbsI	GAAGAC	2 cut(s)	228, 305
BccI	CCATC	1 cut(s)	505
BclI	TGATCA	1 cut(s)	76
BcoDI	GTCTC	3 cut(s)	454, 637, 656
BfaI	CTAG	3 cut(s)	62, 71, 606
BisI	GCNGC	1 cut(s)	419
BlsI	GCNGC	1 cut(s)	420
Bme18I	GGWCC	1 cut(s)	430
BmgBI	CACGTC	1 cut(s)	303
BmgT120I	GGNCC	1 cut(s)	430
BmiI	GGNNCC	1 cut(s)	431
BmrI	ACTGGG	1 cut(s)	183
BmsI	GCATC	1 cut(s)	340
BmuI	ACTGGG	1 cut(s)	183
BpiI	GAAGAC	2 cut(s)	228, 305
BplI	GAGNNNNNCTC	2 cut(s)	370, 402
BpuEI	CTTGAG	1 cut(s)	397
BsaXI	ACNNNNNCTCC	2 cut(s)	465, 495
Bsc4I	CCNNNNNNNGG	3 cut(s)	319, 341, 425
Bse1I	ACTGG	5 cut(s)	91, 178, 267, 615, 631
Bse3DI	GCAATG	1 cut(s)	132
BseGI	GGATG	1 cut(s)	331
BseLI	CCNNNNNNNGG	3 cut(s)	319, 341, 425
BseMI	GCAATG	1 cut(s)	132
BseMII	CTCAG	1 cut(s)	231
BseNI	ACTGG	5 cut(s)	91, 178, 267, 615, 631
BseRI	GAGGAG	4 cut(s)	332, 518, 521, 563
BseYI	CCCAGC	1 cut(s)	469
BsgI	GTGCAG	2 cut(s)	476, 572
BshFI	GGCC	1 cut(s)	418
BslFI	GGGAC	1 cut(s)	443
BslI	CCNNNNNNNGG	3 cut(s)	319, 341, 425
BsmAI	GTCTC	3 cut(s)	454, 637, 656
BsmFI	GGGAC	1 cut(s)	443
BsnI	GGCC	1 cut(s)	418
Bsp143I	GATC	2 cut(s)	76, 89
BspACI	CCGC	1 cut(s)	419
BspANI	GGCC	1 cut(s)	418
BspCNI	CTCAG	1 cut(s)	232
BspLI	GGNNCC	1 cut(s)	431
BspPI	GGATC	1 cut(s)	97
BsrDI	GCAATG	1 cut(s)	132
BsrI	ACTGG	5 cut(s)	91, 178, 267, 615, 631
BssMI	GATC	2 cut(s)	76, 89
Bst4CI	ACNGT	1 cut(s)	398
Bst6I	CTCTTC	1 cut(s)	594
BstAPI	GCANNNNNTGC	1 cut(s)	586
BstC8I	GCNNGC	1 cut(s)	582
BstDEI	CTNAG	2 cut(s)	240, 451
BstF5I	GGATG	1 cut(s)	331
BstHHI	GCGC	1 cut(s)	405
BstKTI	GATC	2 cut(s)	79, 92
BstMAI	GTCTC	3 cut(s)	454, 637, 656
BstMBI	GATC	2 cut(s)	76, 89
BstMWI	GCNNNNNNNGC	2 cut(s)	586, 611
BstNSI	RCATGY	1 cut(s)	50
BstV2I	GAAGAC	2 cut(s)	228, 305
BsuRI	GGCC	1 cut(s)	418
BtrI	CACGTC	1 cut(s)	303
BtsCI	GGATG	1 cut(s)	331
BtsI	GCAGTG	3 cut(s)	300, 584, 648
BtsIMutI	CAGTG	4 cut(s)	99, 300, 584, 648
Cac8I	GCNNGC	1 cut(s)	582
CfoI	GCGC	1 cut(s)	405
Cfr13I	GGNCC	1 cut(s)	430
CviAII	CATG	6 cut(s)	47, 66, 217, 414, 425, 666
DdeI	CTNAG	2 cut(s)	240, 451
DpnI	GATC	2 cut(s)	78, 91
DpnII	GATC	2 cut(s)	76, 89
DrdI	GACNNNNNNGTC	1 cut(s)	127
DseDI	GACNNNNNNGTC	1 cut(s)	127
EaeI	YGGCCR	1 cut(s)	416
Eam1104I	CTCTTC	1 cut(s)	594
EarI	CTCTTC	1 cut(s)	594
Eco47I	GGWCC	1 cut(s)	430
EcoRI	GAATTC	1 cut(s)	370
FaeI	CATG	6 cut(s)	50, 69, 220, 417, 428, 669
FaqI	GGGAC	1 cut(s)	443
FatI	CATG	6 cut(s)	46, 65, 216, 413, 424, 665
FbaI	TGATCA	1 cut(s)	76
Fnu4HI	GCNGC	1 cut(s)	419
FokI	GGATG	1 cut(s)	318
Fsp4HI	GCNGC	1 cut(s)	419
FspAI	RTGCGCAY	1 cut(s)	404
FspBI	CTAG	3 cut(s)	62, 71, 606
FspI	TGCGCA	1 cut(s)	404
GlaI	GCGC	1 cut(s)	404
GluI	GCNGC	1 cut(s)	419
GsaI	CCCAGC	1 cut(s)	473
HaeIII	GGCC	1 cut(s)	418
HhaI	GCGC	1 cut(s)	405
Hin1II	CATG	6 cut(s)	50, 69, 220, 417, 428, 669
Hin6I	GCGC	1 cut(s)	403
HinP1I	GCGC	1 cut(s)	403
HincII	GTYRAC	1 cut(s)	214
HindII	GTYRAC	1 cut(s)	214
HindIII	AAGCTT	1 cut(s)	12
HinfI	GANTC	2 cut(s)	4, 645
HphI	GGTGA	3 cut(s)	167, 178, 512
Hpy166II	GTNNAC	2 cut(s)	8, 214
Hpy188I	TCNGA	1 cut(s)	146
Hpy188III	TCNNGA	1 cut(s)	196
Hpy8I	GTNNAC	2 cut(s)	8, 214
HpyAV	CCTTC	3 cut(s)	152, 193, 268
HpyCH4III	ACNGT	1 cut(s)	398
HpyCH4IV	ACGT	1 cut(s)	302
HpyCH4V	TGCA	5 cut(s)	125, 338, 457, 580, 589
HpyF10VI	GCNNNNNNNGC	2 cut(s)	586, 611
HpyF3I	CTNAG	2 cut(s)	240, 451
HpySE526I	ACGT	1 cut(s)	302
Hsp92II	CATG	6 cut(s)	50, 69, 220, 417, 428, 669
HspAI	GCGC	1 cut(s)	403
Ksp22I	TGATCA	1 cut(s)	76
Kzo9I	GATC	2 cut(s)	76, 89
LweI	GCATC	1 cut(s)	340
MaeI	CTAG	3 cut(s)	62, 71, 606
MaeII	ACGT	1 cut(s)	302
MaeIII	GTNAC	1 cut(s)	258
MalI	GATC	2 cut(s)	78, 91
MboI	GATC	2 cut(s)	76, 89
MboII	GAAGA	3 cut(s)	233, 310, 611
MluCI	AATT	1 cut(s)	370
MlyI	GAGTC	2 cut(s)	13, 639
MseI	TTAA	4 cut(s)	353, 483, 594, 688
MwoI	GCNNNNNNNGC	2 cut(s)	586, 611
NdeII	GATC	2 cut(s)	76, 89
NlaIII	CATG	6 cut(s)	50, 69, 220, 417, 428, 669
NlaIV	GGNNCC	1 cut(s)	431
NsbI	TGCGCA	1 cut(s)	404
NspI	RCATGY	1 cut(s)	50
PciI	ACATGT	1 cut(s)	46
PkrI	GCNGC	1 cut(s)	420
PleI	GAGTC	2 cut(s)	12, 639
PpsI	GAGTC	2 cut(s)	12, 639
PscI	ACATGT	1 cut(s)	46
PspFI	CCCAGC	1 cut(s)	469
PspN4I	GGNNCC	1 cut(s)	431
PspPI	GGNCC	1 cut(s)	430
SaqAI	TTAA	4 cut(s)	353, 483, 594, 688
SatI	GCNGC	1 cut(s)	419
Sau3AI	GATC	2 cut(s)	76, 89
Sau96I	GGNCC	1 cut(s)	430
SchI	GAGTC	2 cut(s)	13, 639
SetI	ASST	6 cut(s)	16, 110, 185, 246, 305, 324
SfaNI	GCATC	1 cut(s)	340
SinI	GGWCC	1 cut(s)	430
SmlI	CTYRAG	1 cut(s)	376
SmoI	CTYRAG	1 cut(s)	376
Sse9I	AATT	1 cut(s)	370
SsiI	CCGC	1 cut(s)	419
SspMI	CTAG	3 cut(s)	62, 71, 606
TaaI	ACNGT	1 cut(s)	398
TaiI	ACGT	1 cut(s)	305
TaqI	TCGA	1 cut(s)	546
TasI	AATT	1 cut(s)	370
TauI	GCSGC	1 cut(s)	421
Tru1I	TTAA	4 cut(s)	353, 483, 594, 688
Tru9I	TTAA	4 cut(s)	353, 483, 594, 688
TscAI	CASTG	4 cut(s)	99, 300, 591, 655
TspDTI	ATGAA	1 cut(s)	46
TspRI	CASTG	4 cut(s)	99, 300, 591, 655
VpaK11BI	GGWCC	1 cut(s)	430
XapI	RAATTY	1 cut(s)	370
XceI	RCATGY	1 cut(s)	50
XspI	CTAG	3 cut(s)	62, 71, 606

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.