Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0001611

Physical Location & Seq

Genomic Coordinates Forward (+)

64035612 .. 64036574

Gene Structure 963 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG389600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGCTCTCCCTCTTTTCTTACTACCACGTGGTGGCAACCACATTGAATCTGGGATTTGGGGATGATGTTGTTGAAATTCCTAGCATTAATCCTCCAGTACGCATATCTTCAGTCCCTCCGTTACTTCTGACTCCCAATAGTCTCTTCGCTAATATATTCATGCAGGACGGTCCAAAACTCCCGAGATTTAATGGGATTTTGATCAATACTTTCGACGGGATAGAAACAGAGGCGGTGGAGTTGCTGAACGGAGGAAAAGTAATCGAAGCGTTGCCTCCACTATTTGCTGTTGGGCCTTTAGTGCCCTGTGAGTTTGAGAAGGTTGATGATGATCAATTGGGAAATGCACAACTATTATTAAAGTGGCTTGATGATCAGGCTGAAGGGTCAGTGGTGTATGTGAGCTTTGGAAGCAGAACAGCTCTCTCAAGAGACCAGATCAAAGAGCTTGGTGATGGGTTGTTGAGATGTGGGTTTCGGTTTCTGTGGGTGGTGAAGGAGAAGCTAGTAGACAGAGAGGAAGAAGAGGGTAGTTTGGAGATTATGGAGGGCAAAGGGTTGGTGGTGAAGCATTGGGTGGACCAAGGAGACATCTTGGGTCACAAGGCAGTGGGAGGGTTTTTGAGTCACTGTGGTTGGAATTCAGTGGTGGAAGCTGCCTGGTATGGTGTAAGAATCCTAGCTTGGCCACAAAATGGGGATCAGAAGCTCAATGCAGAGGTGGTTGAGAGAAGTGGGCTTGGGATATGGGCCAGAACTTGGGCCTGGACCGGAGATGACCCGGTGGTGGTGGTGGTGAAGGGGGAAGACATTGCTGTGAAGATCAAAGAGCTGATGCAGAGTGAAGAGCTGAGAGTGAAGGCTTTGAAGATTGGAGAAGAGGCTAAAAGGGTTGCTGGGTGCCGTGAGAAAATTTTCAAGGGACTGATTGAGGAGTGGAGTAAGGATAAAATGGATACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0047243 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

320

Amino Acids

35.49

Weight (kDa)

4.87

Isoelectric Point (pI)

29.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UDPGT	PF00201	124 - 254	7.2e-16	UDP-glucoronosyl and UDP-glucosyl transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001611)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g47620
malus_domestica	MD16G1064500.v1.1 MD16G1276100.v1.1 MD17G1055500.v1.1
prunus_persica	Prupe.1G282300_v2.0.a1 Prupe.3G260200_v2.0.a1
pyrus_communis	pycom16g05630 pycom16g05640 pycom17g05420
rosa_chinensis	RchiOBHm_Chr2g0166721 RchiOBHm_Chr4g0438831 RchiOBHm_Chr4g0438841
rosa_laevigata	RLG00000006326 RLG00000006327 RLG00000021642
rosa_multiflora	Rmu_co8237817.1_g000001 Rmu_sc0000431.1_g000011 Rmu_sc0002181.1_g000012 Rmu_sc0002505.1_g000018 Rmu_sc0002505.1_g000020 Rmu_sc0003748.1_g000012 Rmu_sc0005433.1_g000002 Rmu_sc0007415.1_g000054 Rmu_sc0009639.1_g000019 Rmu_sc0023543.1_g000001 Rmu_sc0041865.1_g000001
rosa_roxburghii	Rroxscaffold_2G00084290 Rroxscaffold_2G00084610 Rroxscaffold_5G00379870
rosa_rugosa	Rorug02G0525100 Rorug04G0313400 Rorug04G0313400
rosa_samantha	Rh1AG297400 Rh2AG591400 Rh2BG000200 Rh2BG603100 Rh2CG574200 Rh2DG614000 Rh4AG192000 Rh4AG364400 Rh4BG375500 Rh4CG389600 Rh4DG370100 Rh4DG370200 Rh5DG208500 Rh7CG204500
rosa_wichuraiana	Rw0G007250 Rw0G016800 Rw2G049270 Rw4G016330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	900
AccB7I	CCANNNNNTGG	3 cut(s)	31, 695, 759
AccI	GTMKAC	1 cut(s)	510
AciI	CCGC	1 cut(s)	233
AclWI	GGATC	1 cut(s)	708
AcoI	YGGCCR	1 cut(s)	686
AcsI	RAATTY	3 cut(s)	75, 640, 912
AcuI	CTGAAG	2 cut(s)	93, 402
AcvI	CACGTG	1 cut(s)	28
AdeI	CACNNNGTG	1 cut(s)	31
AfaI	GTAC	1 cut(s)	99
AfiI	CCNNNNNNNGG	4 cut(s)	31, 695, 759, 787
AgsI	TTSAA	4 cut(s)	46, 74, 868, 919
AjnI	CCWGG	2 cut(s)	659, 764
AjuI	GAANNNNNNNTTGG	4 cut(s)	128, 160, 667, 699
AluBI	AGCT	9 cut(s)	405, 422, 448, 505, 656, 683, 709, 832, 850
AluI	AGCT	9 cut(s)	405, 422, 448, 505, 656, 683, 709, 832, 850
Alw26I	GTCTC	3 cut(s)	146, 426, 582
AlwI	GGATC	1 cut(s)	708
Ama87I	CYCGRG	1 cut(s)	181
AoxI	GGCC	4 cut(s)	293, 686, 750, 762
ApeKI	GCWGC	1 cut(s)	656
ApoI	RAATTY	3 cut(s)	75, 640, 912
AseI	ATTAAT	1 cut(s)	87
Asp700I	GAANNNNTTC	1 cut(s)	914
AspS9I	GGNCC	6 cut(s)	170, 293, 580, 750, 762, 768
AsuC2I	CCSGG	1 cut(s)	782
AsuHPI	GGTGA	4 cut(s)	464, 505, 577, 808
AvaI	CYCGRG	1 cut(s)	181
AvaII	GGWCC	3 cut(s)	170, 580, 768
BaeGI	GKGCMC	1 cut(s)	306
BalI	TGGCCA	1 cut(s)	688
BanI	GGYRCC	1 cut(s)	900
BbrPI	CACGTG	1 cut(s)	28
BbsI	GAAGAC	1 cut(s)	813
BbvI	GCAGC	1 cut(s)	643
BccI	CCATC	1 cut(s)	449
BceAI	ACGGC	1 cut(s)	888
BciT130I	CCWGG	2 cut(s)	661, 766
BciVI	GTATCC	1 cut(s)	949
BclI	TGATCA	3 cut(s)	201, 331, 373
BcnI	CCSGG	1 cut(s)	782
BcoDI	GTCTC	3 cut(s)	146, 426, 582
BfaI	CTAG	3 cut(s)	81, 506, 680
BfuI	GTATCC	1 cut(s)	949
BisI	GCNGC	1 cut(s)	657
BlsI	GCNGC	1 cut(s)	658
Bme1390I	CCNGG	3 cut(s)	661, 766, 782
Bme18I	GGWCC	3 cut(s)	170, 580, 768
BmeT110I	CYCGRG	1 cut(s)	181
BmgT120I	GGNCC	6 cut(s)	170, 293, 580, 750, 762, 768
BmiI	GGNNCC	1 cut(s)	902
BmrFI	CCNGG	3 cut(s)	661, 766, 782
BmsI	GCATC	1 cut(s)	825
BpiI	GAAGAC	1 cut(s)	813
BpmI	CTGGAG	1 cut(s)	78
BpuEI	CTTGAG	1 cut(s)	412
BpuMI	CCSGG	1 cut(s)	782
BsaAI	YACGTR	1 cut(s)	28
BsaBI	GATNNNNATC	2 cut(s)	200, 330
BsaI	GGTCTC	1 cut(s)	426
BsaJI	CCNNGG	1 cut(s)	583
BsaWI	WCCGGW	1 cut(s)	770
BsaXI	ACNNNNNCTCC	2 cut(s)	243, 273
Bsc4I	CCNNNNNNNGG	4 cut(s)	31, 695, 759, 787
Bse1I	ACTGG	1 cut(s)	95
Bse3DI	GCAATG	1 cut(s)	810
Bse8I	GATNNNNATC	2 cut(s)	200, 330
BseBI	CCWGG	2 cut(s)	661, 766
BseDI	CCNNGG	1 cut(s)	583
BseGI	GGATG	1 cut(s)	67
BseJI	GATNNNNATC	2 cut(s)	200, 330
BseLI	CCNNNNNNNGG	4 cut(s)	31, 695, 759, 787
BseMI	GCAATG	1 cut(s)	810
BseMII	CTCAG	1 cut(s)	842
BseNI	ACTGG	1 cut(s)	95
BseRI	GAGGAG	1 cut(s)	947
BseSI	GKGCMC	1 cut(s)	306
BseXI	GCAGC	1 cut(s)	643
BseYI	CCCAGC	1 cut(s)	896
BshFI	GGCC	4 cut(s)	295, 688, 752, 764
BshNI	GGYRCC	1 cut(s)	900
BsiHKCI	CYCGRG	1 cut(s)	181
BsiSI	CCGG	2 cut(s)	771, 782
BslFI	GGGAC	2 cut(s)	98, 936
BslI	CCNNNNNNNGG	4 cut(s)	31, 695, 759, 787
BsmAI	GTCTC	3 cut(s)	146, 426, 582
BsmFI	GGGAC	2 cut(s)	98, 936
BsnI	GGCC	4 cut(s)	295, 688, 752, 764
Bso31I	GGTCTC	1 cut(s)	426
BsoBI	CYCGRG	1 cut(s)	181
Bsp1286I	GDGCHC	1 cut(s)	306
Bsp143I	GATC	6 cut(s)	201, 331, 373, 438, 700, 822
BspACI	CCGC	1 cut(s)	233
BspANI	GGCC	4 cut(s)	295, 688, 752, 764
BspCNI	CTCAG	1 cut(s)	843
BspLI	GGNNCC	1 cut(s)	902
BspPI	GGATC	1 cut(s)	708
BspQI	GCTCTTC	1 cut(s)	840
BspT107I	GGYRCC	1 cut(s)	900
BspTNI	GGTCTC	1 cut(s)	426
BsrDI	GCAATG	1 cut(s)	810
BsrI	ACTGG	1 cut(s)	95
BssECI	CCNNGG	1 cut(s)	583
BssMI	GATC	6 cut(s)	201, 331, 373, 438, 700, 822
BssT1I	CCWWGG	1 cut(s)	583
Bst2UI	CCWGG	2 cut(s)	661, 766
Bst4CI	ACNGT	2 cut(s)	170, 632
Bst6I	CTCTTC	4 cut(s)	149, 519, 840, 873
BstBAI	YACGTR	1 cut(s)	28
BstDEI	CTNAG	1 cut(s)	851
BstF5I	GGATG	1 cut(s)	67
BstKTI	GATC	6 cut(s)	204, 334, 376, 441, 703, 825
BstMAI	GTCTC	3 cut(s)	146, 426, 582
BstMBI	GATC	6 cut(s)	201, 331, 373, 438, 700, 822
BstMWI	GCNNNNNNNGC	2 cut(s)	301, 411
BstNI	CCWGG	2 cut(s)	661, 766
BstSCI	CCNGG	3 cut(s)	659, 764, 780
BstSLI	GKGCMC	1 cut(s)	306
BstV1I	GCAGC	1 cut(s)	643
BstV2I	GAAGAC	1 cut(s)	813
BsuI	GTATCC	1 cut(s)	949
BsuRI	GGCC	4 cut(s)	295, 688, 752, 764
BtsCI	GGATG	1 cut(s)	67
BtsI	GCAGTG	1 cut(s)	615
BtsIMutI	CAGTG	4 cut(s)	396, 615, 628, 651
Cfr13I	GGNCC	6 cut(s)	170, 293, 580, 750, 762, 768
Csp6I	GTAC	1 cut(s)	98
CviAII	CATG	1 cut(s)	160
CviQI	GTAC	1 cut(s)	98
DdeI	CTNAG	1 cut(s)	851
DpnI	GATC	6 cut(s)	203, 333, 375, 440, 702, 824
DpnII	GATC	6 cut(s)	201, 331, 373, 438, 700, 822
DraIII	CACNNNGTG	1 cut(s)	31
EaeI	YGGCCR	1 cut(s)	686
Eam1104I	CTCTTC	4 cut(s)	149, 519, 840, 873
EarI	CTCTTC	4 cut(s)	149, 519, 840, 873
Eco130I	CCWWGG	1 cut(s)	583
Eco31I	GGTCTC	1 cut(s)	426
Eco47I	GGWCC	3 cut(s)	170, 580, 768
Eco57I	CTGAAG	2 cut(s)	93, 402
Eco72I	CACGTG	1 cut(s)	28
Eco88I	CYCGRG	1 cut(s)	181
EcoRI	GAATTC	1 cut(s)	640
EcoRII	CCWGG	2 cut(s)	659, 764
EcoT14I	CCWWGG	1 cut(s)	583
ErhI	CCWWGG	1 cut(s)	583
FaeI	CATG	1 cut(s)	163
FaiI	YATR	7 cut(s)	104, 155, 161, 399, 545, 666, 748
FaqI	GGGAC	2 cut(s)	98, 936
FatI	CATG	1 cut(s)	159
FbaI	TGATCA	3 cut(s)	201, 331, 373
FblI	GTMKAC	1 cut(s)	510
Fnu4HI	GCNGC	1 cut(s)	657
FokI	GGATG	1 cut(s)	74
Fsp4HI	GCNGC	1 cut(s)	657
FspBI	CTAG	3 cut(s)	81, 506, 680
GluI	GCNGC	1 cut(s)	657
GsaI	CCCAGC	1 cut(s)	900
GsuI	CTGGAG	1 cut(s)	78
HaeIII	GGCC	4 cut(s)	295, 688, 752, 764
HapII	CCGG	2 cut(s)	771, 782
Hin1II	CATG	1 cut(s)	163
HinfI	GANTC	4 cut(s)	46, 130, 625, 675
HpaII	CCGG	2 cut(s)	771, 782
HphI	GGTGA	4 cut(s)	464, 505, 577, 808
Hpy166II	GTNNAC	2 cut(s)	511, 580
Hpy188I	TCNGA	2 cut(s)	129, 705
Hpy188III	TCNNGA	2 cut(s)	181, 429
Hpy8I	GTNNAC	2 cut(s)	511, 580
Hpy99I	CGWCG	1 cut(s)	218
HpyAV	CCTTC	5 cut(s)	313, 377, 490, 793, 853
HpyCH4III	ACNGT	2 cut(s)	170, 632
HpyCH4IV	ACGT	1 cut(s)	27
HpyCH4V	TGCA	4 cut(s)	163, 347, 716, 838
HpyF10VI	GCNNNNNNNGC	2 cut(s)	301, 411
HpyF3I	CTNAG	1 cut(s)	851
HpySE526I	ACGT	1 cut(s)	27
Hsp92II	CATG	1 cut(s)	163
Ksp22I	TGATCA	3 cut(s)	201, 331, 373
Kzo9I	GATC	6 cut(s)	201, 331, 373, 438, 700, 822
LguI	GCTCTTC	1 cut(s)	840
Lsp1109I	GCAGC	1 cut(s)	643
LweI	GCATC	1 cut(s)	825
MaeI	CTAG	3 cut(s)	81, 506, 680
MaeII	ACGT	1 cut(s)	27
MaeIII	GTNAC	3 cut(s)	120, 599, 626
MalI	GATC	6 cut(s)	203, 333, 375, 440, 702, 824
MboI	GATC	6 cut(s)	201, 331, 373, 438, 700, 822
MboII	GAAGA	9 cut(s)	99, 136, 533, 536, 818, 832, 857, 880, 890
MfeI	CAATTG	1 cut(s)	335
MhlI	GDGCHC	1 cut(s)	306
MlsI	TGGCCA	1 cut(s)	688
MluCI	AATT	4 cut(s)	75, 335, 640, 912
MluNI	TGGCCA	1 cut(s)	688
MlyI	GAGTC	2 cut(s)	124, 634
MmeI	TCCRAC	1 cut(s)	617
Mox20I	TGGCCA	1 cut(s)	688
MroXI	GAANNNNTTC	1 cut(s)	914
MscI	TGGCCA	1 cut(s)	688
MseI	TTAA	3 cut(s)	87, 189, 359
MslI	CAYNNNNRTG	1 cut(s)	815
Msp20I	TGGCCA	1 cut(s)	688
MspI	CCGG	2 cut(s)	771, 782
MspR9I	CCNGG	3 cut(s)	661, 766, 782
MunI	CAATTG	1 cut(s)	335
MvaI	CCWGG	2 cut(s)	661, 766
MwoI	GCNNNNNNNGC	2 cut(s)	301, 411
NciI	CCSGG	1 cut(s)	782
NdeII	GATC	6 cut(s)	201, 331, 373, 438, 700, 822
NlaIII	CATG	1 cut(s)	163
NlaIV	GGNNCC	1 cut(s)	902
NmuCI	GTSAC	2 cut(s)	599, 626
PciSI	GCTCTTC	1 cut(s)	840
PdmI	GAANNNNTTC	1 cut(s)	914
PfeI	GAWTC	2 cut(s)	46, 675
PflMI	CCANNNNNTGG	3 cut(s)	31, 695, 759
PkrI	GCNGC	1 cut(s)	658
PleI	GAGTC	2 cut(s)	124, 633
PmaCI	CACGTG	1 cut(s)	28
PmlI	CACGTG	1 cut(s)	28
PpsI	GAGTC	2 cut(s)	124, 633
Ppu21I	YACGTR	1 cut(s)	28
PshBI	ATTAAT	1 cut(s)	87
Psp6I	CCWGG	2 cut(s)	659, 764
PspCI	CACGTG	1 cut(s)	28
PspFI	CCCAGC	1 cut(s)	896
PspGI	CCWGG	2 cut(s)	659, 764
PspN4I	GGNNCC	1 cut(s)	902
PspPI	GGNCC	6 cut(s)	170, 293, 580, 750, 762, 768
RsaI	GTAC	1 cut(s)	99
RsaNI	GTAC	1 cut(s)	98
RseI	CAYNNNNRTG	1 cut(s)	815
SapI	GCTCTTC	1 cut(s)	840
SaqAI	TTAA	3 cut(s)	87, 189, 359
SatI	GCNGC	1 cut(s)	657
Sau3AI	GATC	6 cut(s)	201, 331, 373, 438, 700, 822
Sau96I	GGNCC	6 cut(s)	170, 293, 580, 750, 762, 768
SchI	GAGTC	2 cut(s)	124, 634
ScrFI	CCNGG	3 cut(s)	661, 766, 782
SduI	GDGCHC	1 cut(s)	306
SfaNI	GCATC	1 cut(s)	825
SinI	GGWCC	3 cut(s)	170, 580, 768
SmiMI	CAYNNNNRTG	1 cut(s)	815
SmlI	CTYRAG	1 cut(s)	427
SmoI	CTYRAG	1 cut(s)	427
Sse9I	AATT	4 cut(s)	75, 335, 640, 912
SsiI	CCGC	1 cut(s)	233
SspMI	CTAG	3 cut(s)	81, 506, 680
StyD4I	CCNGG	3 cut(s)	659, 764, 780
StyI	CCWWGG	1 cut(s)	583
TaaI	ACNGT	2 cut(s)	170, 632
TaiI	ACGT	1 cut(s)	30
TaqI	TCGA	2 cut(s)	213, 264
TasI	AATT	4 cut(s)	75, 335, 640, 912
TfiI	GAWTC	2 cut(s)	46, 675
Tru1I	TTAA	3 cut(s)	87, 189, 359
Tru9I	TTAA	3 cut(s)	87, 189, 359
TscAI	CASTG	4 cut(s)	396, 615, 635, 651
TseFI	GTSAC	2 cut(s)	599, 626
TseI	GCWGC	1 cut(s)	656
Tsp45I	GTSAC	2 cut(s)	599, 626
TspDTI	ATGAA	1 cut(s)	148
TspGWI	ACGGA	2 cut(s)	108, 264
TspRI	CASTG	4 cut(s)	396, 615, 635, 651
Van91I	CCANNNNNTGG	3 cut(s)	31, 695, 759
VpaK11BI	GGWCC	3 cut(s)	170, 580, 768
VspI	ATTAAT	1 cut(s)	87
XapI	RAATTY	3 cut(s)	75, 640, 912
XcmI	CCANNNNNNNNNTGG	1 cut(s)	46
XmiI	GTMKAC	1 cut(s)	510
XmnI	GAANNNNTTC	1 cut(s)	914
XspI	CTAG	3 cut(s)	81, 506, 680

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.