Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0001611

Physical Location & Seq

Genomic Coordinates Forward (+)

3618392 .. 3618985

Gene Structure 594 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g05630.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGCTATTAACGCAAGCTTCACAATGTGGCCTCTCCACACTCAAAGCTCTCTGTTTTAGCGACTACCATTGCCACCGCCTCCCTACCAAGATGCCAGCAGACTCCGGCAGCCTTCTCCAAACCACCGAAACTCATGTCGTTCTTTTACCCAGCTCCCAGATGGGGCACTTGACACCCATGCTACGATTTGCCGCTTTATTGCTTGCCCAAAACCACCGCCCACTGAGGCTCACCCTCATCACCGCCCTCCCCACCGTCTCCCTCGCCGAGTCAGCTCTCATCTCCCGCTTCCTCTCAGCTTACCACGACCGAGTTACTCACCTCCAGTTCCATCCACTTCCCATAGACCCTTCCACCGTGAATTCCACTGACCCGTTTTGGATCCAGTTTGAAGTCATCCGCCGCTCCGCTCACCTCCCAACTCCTTTGCTTTCCACTCTCTCTCCTCCTCCCTCCGCCGTCATCTACGACATCAGTTTACTCTCCCCCGTCCTCCCCGTCATCCAAACCCTCCCTTACCATCTTCCTGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0047243 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

178

Amino Acids

19.53

Weight (kDa)

7.87

Isoelectric Point (pI)

59.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001611)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g47620
malus_domestica	MD16G1064500.v1.1 MD16G1276100.v1.1 MD17G1055500.v1.1
prunus_persica	Prupe.1G282300_v2.0.a1 Prupe.3G260200_v2.0.a1
pyrus_communis	pycom16g05630 pycom16g05640 pycom17g05420
rosa_chinensis	RchiOBHm_Chr2g0166721 RchiOBHm_Chr4g0438831 RchiOBHm_Chr4g0438841
rosa_laevigata	RLG00000006326 RLG00000006327 RLG00000021642
rosa_multiflora	Rmu_co8237817.1_g000001 Rmu_sc0000431.1_g000011 Rmu_sc0002181.1_g000012 Rmu_sc0002505.1_g000018 Rmu_sc0002505.1_g000020 Rmu_sc0003748.1_g000012 Rmu_sc0005433.1_g000002 Rmu_sc0007415.1_g000054 Rmu_sc0009639.1_g000019 Rmu_sc0023543.1_g000001 Rmu_sc0041865.1_g000001
rosa_roxburghii	Rroxscaffold_2G00084290 Rroxscaffold_2G00084610 Rroxscaffold_5G00379870
rosa_rugosa	Rorug02G0525100 Rorug04G0313400 Rorug04G0313400
rosa_samantha	Rh1AG297400 Rh2AG591400 Rh2BG000200 Rh2BG603100 Rh2CG574200 Rh2DG614000 Rh4AG192000 Rh4AG364400 Rh4BG375500 Rh4CG389600 Rh4DG370100 Rh4DG370200 Rh5DG208500 Rh7CG204500
rosa_wichuraiana	Rw0G007250 Rw0G016800 Rw2G049270 Rw4G016330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	405, 410
AciI	CCGC	9 cut(s)	76, 192, 217, 243, 286, 400, 403, 408, 456
AclWI	GGATC	2 cut(s)	376, 389
AcsI	RAATTY	1 cut(s)	361
AdeI	CACNNNGTG	1 cut(s)	26
AfiI	CCNNNNNNNGG	1 cut(s)	162
AgsI	TTSAA	1 cut(s)	392
AluBI	AGCT	5 cut(s)	17, 47, 153, 275, 299
AluI	AGCT	5 cut(s)	17, 47, 153, 275, 299
Alw26I	GTCTC	1 cut(s)	262
AlwI	GGATC	2 cut(s)	376, 389
AoxI	GGCC	1 cut(s)	28
ApeKI	GCWGC	1 cut(s)	108
ApoI	RAATTY	1 cut(s)	361
ArsI	GACNNNNNNTTYG	2 cut(s)	120, 152
AsuHPI	GGTGA	4 cut(s)	223, 232, 311, 404
BaeGI	GKGCMC	1 cut(s)	168
BamHI	GGATCC	1 cut(s)	381
BbvI	GCAGC	1 cut(s)	120
BccI	CCATC	3 cut(s)	154, 339, 528
BceAI	ACGGC	1 cut(s)	443
BcoDI	GTCTC	1 cut(s)	262
BfaI	CTAG	1 cut(s)	532
BisI	GCNGC	3 cut(s)	109, 192, 403
BlsI	GCNGC	3 cut(s)	110, 193, 404
BmiI	GGNNCC	1 cut(s)	383
BmsI	GCATC	1 cut(s)	81
BpmI	CTGGAG	1 cut(s)	308
BsaXI	ACNNNNNCTCC	2 cut(s)	427, 457
Bsc4I	CCNNNNNNNGG	1 cut(s)	162
Bse1I	ACTGG	2 cut(s)	325, 385
Bse3DI	GCAATG	1 cut(s)	67
BseGI	GGATG	3 cut(s)	331, 396, 501
BseLI	CCNNNNNNNGG	1 cut(s)	162
BseMI	GCAATG	1 cut(s)	67
BseMII	CTCAG	2 cut(s)	215, 309
BseNI	ACTGG	2 cut(s)	325, 385
BseRI	GAGGAG	2 cut(s)	435, 438
BseSI	GKGCMC	1 cut(s)	168
BseXI	GCAGC	1 cut(s)	120
BseYI	CCCAGC	1 cut(s)	149
Bsh1285I	CGRYCG	1 cut(s)	310
BshFI	GGCC	1 cut(s)	30
BsiEI	CGRYCG	1 cut(s)	310
BsiSI	CCGG	1 cut(s)	105
BslI	CCNNNNNNNGG	1 cut(s)	162
BsmAI	GTCTC	1 cut(s)	262
BsmBI	CGTCTC	1 cut(s)	262
BsnI	GGCC	1 cut(s)	30
Bsp1286I	GDGCHC	1 cut(s)	168
Bsp143I	GATC	1 cut(s)	381
BspACI	CCGC	9 cut(s)	76, 192, 217, 243, 286, 400, 403, 408, 456
BspANI	GGCC	1 cut(s)	30
BspCNI	CTCAG	2 cut(s)	216, 308
BspLI	GGNNCC	1 cut(s)	383
BspPI	GGATC	2 cut(s)	376, 389
BsrBI	CCGCTC	2 cut(s)	405, 410
BsrDI	GCAATG	1 cut(s)	67
BsrI	ACTGG	2 cut(s)	325, 385
BssMI	GATC	1 cut(s)	381
Bst4CI	ACNGT	2 cut(s)	256, 358
BstC8I	GCNNGC	3 cut(s)	15, 96, 204
BstDEI	CTNAG	2 cut(s)	224, 295
BstF5I	GGATG	3 cut(s)	331, 396, 501
BstKTI	GATC	1 cut(s)	384
BstMAI	GTCTC	1 cut(s)	262
BstMBI	GATC	1 cut(s)	381
BstMCI	CGRYCG	1 cut(s)	310
BstMWI	GCNNNNNNNGC	2 cut(s)	10, 272
BstSLI	GKGCMC	1 cut(s)	168
BstV1I	GCAGC	1 cut(s)	120
BstX2I	RGATCY	1 cut(s)	381
BstYI	RGATCY	1 cut(s)	381
BsuRI	GGCC	1 cut(s)	30
BtsCI	GGATG	3 cut(s)	331, 396, 501
BtsIMutI	CAGTG	2 cut(s)	221, 366
Cac8I	GCNNGC	3 cut(s)	15, 96, 204
CviAII	CATG	2 cut(s)	134, 178
CviJI	RGCY	8 cut(s)	17, 30, 47, 111, 153, 229, 275, 299
CviKI_1	RGCY	8 cut(s)	17, 30, 47, 111, 153, 229, 275, 299
DdeI	CTNAG	2 cut(s)	224, 295
DpnI	GATC	1 cut(s)	383
DpnII	GATC	1 cut(s)	381
DraIII	CACNNNGTG	1 cut(s)	26
EciI	GGCGGA	2 cut(s)	389, 445
EcoRI	GAATTC	1 cut(s)	361
Esp3I	CGTCTC	1 cut(s)	262
FaeI	CATG	2 cut(s)	137, 181
FaiI	YATR	3 cut(s)	135, 179, 344
FatI	CATG	2 cut(s)	133, 177
FauI	CCCGC	1 cut(s)	293
Fnu4HI	GCNGC	3 cut(s)	109, 192, 403
FokI	GGATG	3 cut(s)	318, 383, 488
Fsp4HI	GCNGC	3 cut(s)	109, 192, 403
FspBI	CTAG	1 cut(s)	532
GluI	GCNGC	3 cut(s)	109, 192, 403
GsaI	CCCAGC	1 cut(s)	153
GsuI	CTGGAG	1 cut(s)	308
HaeIII	GGCC	1 cut(s)	30
HapII	CCGG	1 cut(s)	105
Hin1II	CATG	2 cut(s)	137, 181
HindIII	AAGCTT	1 cut(s)	15
HinfI	GANTC	2 cut(s)	101, 269
HpaII	CCGG	1 cut(s)	105
HphI	GGTGA	4 cut(s)	223, 232, 311, 404
Hpy166II	GTNNAC	1 cut(s)	479
Hpy8I	GTNNAC	1 cut(s)	479
HpyAV	CCTTC	2 cut(s)	122, 360
HpyCH4III	ACNGT	2 cut(s)	256, 358
HpyF10VI	GCNNNNNNNGC	2 cut(s)	10, 272
HpyF3I	CTNAG	2 cut(s)	224, 295
Hsp92II	CATG	2 cut(s)	137, 181
Kzo9I	GATC	1 cut(s)	381
LmnI	GCTCC	2 cut(s)	158, 410
LpnPI	CCDG	6 cut(s)	108, 118, 163, 170, 338, 398
Lsp1109I	GCAGC	1 cut(s)	120
LweI	GCATC	1 cut(s)	81
MaeI	CTAG	1 cut(s)	532
MaeIII	GTNAC	1 cut(s)	313
MalI	GATC	1 cut(s)	383
MbiI	CCGCTC	2 cut(s)	405, 410
MboI	GATC	1 cut(s)	381
MboII	GAAGA	1 cut(s)	515
MflI	RGATCY	1 cut(s)	381
MhlI	GDGCHC	1 cut(s)	168
MluCI	AATT	1 cut(s)	361
MlyI	GAGTC	2 cut(s)	95, 278
MseI	TTAA	1 cut(s)	8
MspI	CCGG	1 cut(s)	105
MwoI	GCNNNNNNNGC	2 cut(s)	10, 272
NdeII	GATC	1 cut(s)	381
NlaIII	CATG	2 cut(s)	137, 181
NlaIV	GGNNCC	1 cut(s)	383
NmeAIII	GCCGAG	1 cut(s)	292
PkrI	GCNGC	3 cut(s)	110, 193, 404
PleI	GAGTC	2 cut(s)	95, 277
PpsI	GAGTC	2 cut(s)	95, 277
PspFI	CCCAGC	1 cut(s)	149
PspN4I	GGNNCC	1 cut(s)	383
PsuI	RGATCY	1 cut(s)	381
SaqAI	TTAA	1 cut(s)	8
SatI	GCNGC	3 cut(s)	109, 192, 403
Sau3AI	GATC	1 cut(s)	381
SchI	GAGTC	2 cut(s)	95, 278
SduI	GDGCHC	1 cut(s)	168
SetI	ASST	7 cut(s)	19, 49, 155, 277, 301, 324, 417
SfaNI	GCATC	1 cut(s)	81
Sse9I	AATT	1 cut(s)	361
SsiI	CCGC	9 cut(s)	76, 192, 217, 243, 286, 400, 403, 408, 456
SspMI	CTAG	1 cut(s)	532
TaaI	ACNGT	2 cut(s)	256, 358
TaqII	GACCGA	1 cut(s)	324
TasI	AATT	1 cut(s)	361
TauI	GCSGC	2 cut(s)	194, 405
Tru1I	TTAA	1 cut(s)	8
Tru9I	TTAA	1 cut(s)	8
TscAI	CASTG	2 cut(s)	228, 373
TseI	GCWGC	1 cut(s)	108
TspRI	CASTG	2 cut(s)	228, 373
XapI	RAATTY	1 cut(s)	361
XcmI	CCANNNNNNNNNTGG	1 cut(s)	157
XspI	CTAG	1 cut(s)	532

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.