Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0001611

Physical Location & Seq

Genomic Coordinates Forward (+)

84568886 .. 84569929

Gene Structure 1044 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG614000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

ATGATCACAGATATGAGCTTCTCCTCCACTGTTATTCCCATAACCGATTCTCTTGGACTTCCTAACTACATTTTCTTCACATCATCTGCCAAAATGTTGACACTTTATGTGTCCTTCCACACCATGCTCGGTCCAAACCGAGAAATCAAAGATGGTCTTGAAGTTTCAGGTTTAGAGCCAATACCAAAAGCATGGATTCCTCCACCACTTCTCAAGGACAGTAATAATCTCCTGAAGAGCTTTTTCACAGAGAATGGTAAGAAAATGACAGAGTCGACTGGTATTCTGATCAACACATTCGAGAGTATAGAGCATGAGACAGTGGCTGCACTAAATGAGGGCAGGGTATTAAAAGGGCTACCATCGGCAATTGCCATTGGACCACTTCCACCATGTAACTCTGAGACAGACCATCAACTAGCATGGCTAGATGATCAGCCAACTGGATCAGTGTTCTATGTCAGCTTTGGGAGTAGGACTGCAATGTCAAGGGAGCAAATCAGAGAGTTGGGTGAGGGCTTGGTGAGGAGTGGGTGTAGGTTTCTGTGGGTCGTGAAGGATAAAAAAGTTGACATGGAAGACGATGAGAAACTGACTGAGGTGCTTGGACAGGGTTTACTGGAAAGAGTGAAGGAAAAGGGATTGGCAGTGAAGAAGTGGCTGAACCAAGAGGAGGTATTGAGGCATCCCGCAATCGCTGGCTTTTTAAGTCATTGTGGCTGGAATTCCTTGAGTGAGGCTCTGTGGAACGGTGTTCCCGTATTAGCATGGCCGCAACATGGGGACCAGAAAATCAATGCCGACTTGGTGGAGAGAATTGGGCTGGGAGTGTGGGTTAAGAGTTGGGGTTGGGGTGAGGAGGAGGTGGTGGTGAAAGCAGAGGATATTGCAGCGAGGGTTAAGGAGATTATGGGAAATGACTCATTGAGATTGCAAGCACTACACATTAAAGAAGAGGCTAGACTGGCAGTAGGAGATACTGGTAGTTCTACCAAGAGACTCACTGCTCTCATTGAGACATGGAAAGAGTTTCGAGTTAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0047243 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

347

Amino Acids

38.57

Weight (kDa)

5.43

Isoelectric Point (pI)

40.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UDPGT	PF00201	139 - 308	2e-19	UDP-glucoronosyl and UDP-glucosyl transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001611)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g47620
malus_domestica	MD16G1064500.v1.1 MD16G1276100.v1.1 MD17G1055500.v1.1
prunus_persica	Prupe.1G282300_v2.0.a1 Prupe.3G260200_v2.0.a1
pyrus_communis	pycom16g05630 pycom16g05640 pycom17g05420
rosa_chinensis	RchiOBHm_Chr2g0166721 RchiOBHm_Chr4g0438831 RchiOBHm_Chr4g0438841
rosa_laevigata	RLG00000006326 RLG00000006327 RLG00000021642
rosa_multiflora	Rmu_co8237817.1_g000001 Rmu_sc0000431.1_g000011 Rmu_sc0002181.1_g000012 Rmu_sc0002505.1_g000018 Rmu_sc0002505.1_g000020 Rmu_sc0003748.1_g000012 Rmu_sc0005433.1_g000002 Rmu_sc0007415.1_g000054 Rmu_sc0009639.1_g000019 Rmu_sc0023543.1_g000001 Rmu_sc0041865.1_g000001
rosa_roxburghii	Rroxscaffold_2G00084290 Rroxscaffold_2G00084610 Rroxscaffold_5G00379870
rosa_rugosa	Rorug02G0525100 Rorug04G0313400 Rorug04G0313400
rosa_samantha	Rh1AG297400 Rh2AG591400 Rh2BG000200 Rh2BG603100 Rh2CG574200 Rh2DG614000 Rh4AG192000 Rh4AG364400 Rh4BG375500 Rh4CG389600 Rh4DG370100 Rh4DG370200 Rh5DG208500 Rh7CG204500
rosa_wichuraiana	Rw0G007250 Rw0G016800 Rw2G049270 Rw4G016330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	484
AccI	GTMKAC	1 cut(s)	275
AciI	CCGC	2 cut(s)	690, 773
AclWI	GGATC	1 cut(s)	454
AcoI	YGGCCR	1 cut(s)	770
AcsI	RAATTY	1 cut(s)	724
AcuI	CTGAAG	1 cut(s)	254
AfiI	CCNNNNNNNGG	2 cut(s)	673, 779
AgsI	TTSAA	1 cut(s)	161
AluBI	AGCT	3 cut(s)	18, 240, 465
AluI	AGCT	3 cut(s)	18, 240, 465
Alw26I	GTCTC	4 cut(s)	311, 398, 991, 1010
AlwI	GGATC	1 cut(s)	454
AlwNI	CAGNNNCTG	1 cut(s)	326
AoxI	GGCC	1 cut(s)	770
ApeKI	GCWGC	2 cut(s)	326, 890
ApoI	RAATTY	1 cut(s)	724
AspS9I	GGNCC	3 cut(s)	131, 380, 784
AsuHPI	GGTGA	4 cut(s)	524, 535, 866, 883
AvaII	GGWCC	3 cut(s)	131, 380, 784
BbsI	GAAGAC	1 cut(s)	585
BbvI	GCAGC	2 cut(s)	313, 902
BccI	CCATC	3 cut(s)	146, 370, 420
BclI	TGATCA	3 cut(s)	3, 288, 433
BcoDI	GTCTC	4 cut(s)	311, 398, 991, 1010
BfaI	CTAG	3 cut(s)	419, 428, 960
BisI	GCNGC	3 cut(s)	327, 773, 891
BlsI	GCNGC	3 cut(s)	328, 774, 892
Bme18I	GGWCC	3 cut(s)	131, 380, 784
BmgT120I	GGNCC	3 cut(s)	131, 380, 784
BmiI	GGNNCC	1 cut(s)	785
BmsI	GCATC	1 cut(s)	694
BpiI	GAAGAC	1 cut(s)	585
BplI	GAGNNNNNCTC	2 cut(s)	724, 756
BpuEI	CTTGAG	2 cut(s)	197, 751
BsaXI	ACNNNNNCTCC	4 cut(s)	520, 550, 819, 849
Bsc4I	CCNNNNNNNGG	2 cut(s)	673, 779
Bse1I	ACTGG	5 cut(s)	283, 448, 624, 969, 985
Bse3DI	GCAATG	1 cut(s)	489
BseGI	GGATG	1 cut(s)	685
BseLI	CCNNNNNNNGG	2 cut(s)	673, 779
BseMI	GCAATG	1 cut(s)	489
BseMII	CTCAG	2 cut(s)	393, 588
BseNI	ACTGG	5 cut(s)	283, 448, 624, 969, 985
BseRI	GAGGAG	5 cut(s)	13, 541, 686, 872, 875
BseXI	GCAGC	2 cut(s)	313, 902
BseYI	CCCAGC	1 cut(s)	823
BsgI	GTGCAG	1 cut(s)	312
BshFI	GGCC	1 cut(s)	772
BslFI	GGGAC	1 cut(s)	797
BslI	CCNNNNNNNGG	2 cut(s)	673, 779
BsmAI	GTCTC	4 cut(s)	311, 398, 991, 1010
BsmFI	GGGAC	1 cut(s)	797
BsnI	GGCC	1 cut(s)	772
Bsp143I	GATC	4 cut(s)	3, 288, 433, 446
BspACI	CCGC	2 cut(s)	690, 773
BspANI	GGCC	1 cut(s)	772
BspCNI	CTCAG	2 cut(s)	394, 589
BspLI	GGNNCC	1 cut(s)	785
BspPI	GGATC	1 cut(s)	454
BspQI	GCTCTTC	1 cut(s)	230
BsrDI	GCAATG	1 cut(s)	489
BsrI	ACTGG	5 cut(s)	283, 448, 624, 969, 985
BssMI	GATC	4 cut(s)	3, 288, 433, 446
Bst4CI	ACNGT	4 cut(s)	31, 221, 322, 752
Bst6I	CTCTTC	2 cut(s)	230, 948
BstC8I	GCNNGC	2 cut(s)	700, 936
BstDEI	CTNAG	2 cut(s)	402, 597
BstF5I	GGATG	1 cut(s)	685
BstKTI	GATC	4 cut(s)	6, 291, 436, 449
BstMAI	GTCTC	4 cut(s)	311, 398, 991, 1010
BstMBI	GATC	4 cut(s)	3, 288, 433, 446
BstMWI	GCNNNNNNNGC	1 cut(s)	965
BstV1I	GCAGC	2 cut(s)	313, 902
BstV2I	GAAGAC	1 cut(s)	585
BstXI	CCANNNNNNTGG	1 cut(s)	192
BsuRI	GGCC	1 cut(s)	772
BtsCI	GGATG	1 cut(s)	685
BtsI	GCAGTG	2 cut(s)	654, 1002
BtsIMutI	CAGTG	5 cut(s)	27, 327, 456, 654, 1002
Cac8I	GCNNGC	2 cut(s)	700, 936
CaiI	CAGNNNCTG	1 cut(s)	326
Cfr13I	GGNCC	3 cut(s)	131, 380, 784
CviAII	CATG	9 cut(s)	124, 192, 314, 393, 423, 574, 768, 779, 1020
DdeI	CTNAG	2 cut(s)	402, 597
DpnI	GATC	4 cut(s)	5, 290, 435, 448
DpnII	GATC	4 cut(s)	3, 288, 433, 446
DrdI	GACNNNNNNGTC	1 cut(s)	484
DseDI	GACNNNNNNGTC	1 cut(s)	484
EaeI	YGGCCR	1 cut(s)	770
Eam1104I	CTCTTC	2 cut(s)	230, 948
EarI	CTCTTC	2 cut(s)	230, 948
Eco47I	GGWCC	3 cut(s)	131, 380, 784
Eco57I	CTGAAG	1 cut(s)	254
EcoRI	GAATTC	1 cut(s)	724
FaeI	CATG	9 cut(s)	127, 195, 317, 396, 426, 577, 771, 782, 1023
FalI	AAGNNNNNCTT	2 cut(s)	141, 173
FaqI	GGGAC	1 cut(s)	797
FatI	CATG	9 cut(s)	123, 191, 313, 392, 422, 573, 767, 778, 1019
FauI	CCCGC	1 cut(s)	697
FbaI	TGATCA	3 cut(s)	3, 288, 433
FblI	GTMKAC	1 cut(s)	275
Fnu4HI	GCNGC	3 cut(s)	327, 773, 891
FokI	GGATG	1 cut(s)	672
Fsp4HI	GCNGC	3 cut(s)	327, 773, 891
FspBI	CTAG	3 cut(s)	419, 428, 960
GluI	GCNGC	3 cut(s)	327, 773, 891
GsaI	CCCAGC	1 cut(s)	827
HaeIII	GGCC	1 cut(s)	772
Hin1II	CATG	9 cut(s)	127, 195, 317, 396, 426, 577, 771, 782, 1023
HincII	GTYRAC	3 cut(s)	99, 276, 571
HindII	GTYRAC	3 cut(s)	99, 276, 571
HinfI	GANTC	5 cut(s)	47, 196, 272, 920, 999
HphI	GGTGA	4 cut(s)	524, 535, 866, 883
Hpy166II	GTNNAC	4 cut(s)	99, 276, 571, 617
Hpy188I	TCNGA	3 cut(s)	288, 403, 503
Hpy188III	TCNNGA	4 cut(s)	158, 232, 301, 553
Hpy8I	GTNNAC	4 cut(s)	99, 276, 571, 617
HpyAV	CCTTC	3 cut(s)	124, 550, 625
HpyCH4III	ACNGT	4 cut(s)	31, 221, 322, 752
HpyCH4V	TGCA	4 cut(s)	329, 482, 890, 934
HpyF10VI	GCNNNNNNNGC	1 cut(s)	965
HpyF3I	CTNAG	2 cut(s)	402, 597
Hsp92II	CATG	9 cut(s)	127, 195, 317, 396, 426, 577, 771, 782, 1023
Ksp22I	TGATCA	3 cut(s)	3, 288, 433
Kzo9I	GATC	4 cut(s)	3, 288, 433, 446
LguI	GCTCTTC	1 cut(s)	230
LmnI	GCTCC	1 cut(s)	493
Lsp1109I	GCAGC	2 cut(s)	313, 902
LweI	GCATC	1 cut(s)	694
MaeI	CTAG	3 cut(s)	419, 428, 960
MaeIII	GTNAC	1 cut(s)	395
MalI	GATC	4 cut(s)	5, 290, 435, 448
MboI	GATC	4 cut(s)	3, 288, 433, 446
MboII	GAAGA	5 cut(s)	67, 247, 590, 664, 965
MfeI	CAATTG	1 cut(s)	369
MluCI	AATT	3 cut(s)	369, 724, 816
MlyI	GAGTC	3 cut(s)	281, 914, 993
MseI	TTAA	6 cut(s)	350, 707, 837, 900, 948, 1042
MslI	CAYNNNNRTG	1 cut(s)	11
MunI	CAATTG	1 cut(s)	369
MwoI	GCNNNNNNNGC	1 cut(s)	965
NdeII	GATC	4 cut(s)	3, 288, 433, 446
NlaIII	CATG	9 cut(s)	127, 195, 317, 396, 426, 577, 771, 782, 1023
NlaIV	GGNNCC	1 cut(s)	785
PciSI	GCTCTTC	1 cut(s)	230
PcsI	WCGNNNNNNNCGW	1 cut(s)	756
PfeI	GAWTC	2 cut(s)	47, 196
PflFI	GACNNNGTC	1 cut(s)	271
PkrI	GCNGC	3 cut(s)	328, 774, 892
PleI	GAGTC	3 cut(s)	280, 914, 993
PpsI	GAGTC	3 cut(s)	280, 914, 993
PspFI	CCCAGC	1 cut(s)	823
PspN4I	GGNNCC	1 cut(s)	785
PspPI	GGNCC	3 cut(s)	131, 380, 784
PstNI	CAGNNNCTG	1 cut(s)	326
PsyI	GACNNNGTC	1 cut(s)	271
RseI	CAYNNNNRTG	1 cut(s)	11
SalI	GTCGAC	1 cut(s)	274
SapI	GCTCTTC	1 cut(s)	230
SaqAI	TTAA	6 cut(s)	350, 707, 837, 900, 948, 1042
SatI	GCNGC	3 cut(s)	327, 773, 891
Sau3AI	GATC	4 cut(s)	3, 288, 433, 446
Sau96I	GGNCC	3 cut(s)	131, 380, 784
SchI	GAGTC	3 cut(s)	281, 914, 993
SetI	ASST	8 cut(s)	20, 172, 242, 467, 542, 603, 678, 867
SfaNI	GCATC	1 cut(s)	694
SinI	GGWCC	3 cut(s)	131, 380, 784
SmiMI	CAYNNNNRTG	1 cut(s)	11
SmlI	CTYRAG	2 cut(s)	212, 730
SmoI	CTYRAG	2 cut(s)	212, 730
Sse9I	AATT	3 cut(s)	369, 724, 816
SsiI	CCGC	2 cut(s)	690, 773
SspMI	CTAG	3 cut(s)	419, 428, 960
TaaI	ACNGT	4 cut(s)	31, 221, 322, 752
TaqI	TCGA	3 cut(s)	275, 300, 1033
TaqII	GACCGA	1 cut(s)	119
TasI	AATT	3 cut(s)	369, 724, 816
TauI	GCSGC	1 cut(s)	775
TfiI	GAWTC	2 cut(s)	47, 196
Tru1I	TTAA	6 cut(s)	350, 707, 837, 900, 948, 1042
Tru9I	TTAA	6 cut(s)	350, 707, 837, 900, 948, 1042
TscAI	CASTG	5 cut(s)	34, 327, 456, 654, 1009
TseI	GCWGC	2 cut(s)	326, 890
TspRI	CASTG	5 cut(s)	34, 327, 456, 654, 1009
Tth111I	GACNNNGTC	1 cut(s)	271
VpaK11BI	GGWCC	3 cut(s)	131, 380, 784
XapI	RAATTY	1 cut(s)	724
XmiI	GTMKAC	1 cut(s)	275
XspI	CTAG	3 cut(s)	419, 428, 960

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.