Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001611

Physical Location & Seq

Genomic Coordinates Forward (+)

61400625 .. 61401909

Gene Structure 1285 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ40692

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGCACTTCCTCATGTCATCAGAATGCGGTAACGTCCTCCTCCGGCGAGCCCAGGCTCATGTCGTTCTCCTCCCAAGCGCCGGCATGGGCCATCTGACACCCTTTCTACGACTTGCCGCATTGCTATCCCAAAACCACCGCTGCCAGTTGACCCTCATCACCACCCACCCCACTGTCTCACTCGCCGAGTCTTCTCTCATCTCTCGCTTCCTCTCTGCCTTCCCTCACGTCACTCAAATCCATTTCCACCTCCTTCCTCTCGACCCCACCACCGTCAACTCAACCGACCCCTTTTTCCTCAGATTCGAAGCCATTCGCCGCTCCGCTCATCTCCTCCCCCCGCTCTCCTCTCTTTCCTCGCCTCCCTCTGCTCTCGGTTATGACGTGAGCTTAATATCTCCTGTCCTCACCGTCATTGAAGCTCTTTGGTTACGCCTTCCTGCATACATTTTCTTCACCTCCTCGGCCAGAATGCTCTCCCTCTTTTCTTACTACCAGTGGCAACCACATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0047243 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

170

Amino Acids

19.03

Weight (kDa)

9.3

Isoelectric Point (pI)

66.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001611)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g47620
malus_domestica	MD16G1064500.v1.1 MD16G1276100.v1.1 MD17G1055500.v1.1
prunus_persica	Prupe.1G282300_v2.0.a1 Prupe.3G260200_v2.0.a1
pyrus_communis	pycom16g05630 pycom16g05640 pycom17g05420
rosa_chinensis	RchiOBHm_Chr2g0166721 RchiOBHm_Chr4g0438831 RchiOBHm_Chr4g0438841
rosa_laevigata	RLG00000006326 RLG00000006327 RLG00000021642
rosa_multiflora	Rmu_co8237817.1_g000001 Rmu_sc0000431.1_g000011 Rmu_sc0002181.1_g000012 Rmu_sc0002505.1_g000018 Rmu_sc0002505.1_g000020 Rmu_sc0003748.1_g000012 Rmu_sc0005433.1_g000002 Rmu_sc0007415.1_g000054 Rmu_sc0009639.1_g000019 Rmu_sc0023543.1_g000001 Rmu_sc0041865.1_g000001
rosa_roxburghii	Rroxscaffold_2G00084290 Rroxscaffold_2G00084610 Rroxscaffold_5G00379870
rosa_rugosa	Rorug02G0525100 Rorug04G0313400 Rorug04G0313400
rosa_samantha	Rh1AG297400 Rh2AG591400 Rh2BG000200 Rh2BG603100 Rh2CG574200 Rh2DG614000 Rh4AG192000 Rh4AG364400 Rh4BG375500 Rh4CG389600 Rh4DG370100 Rh4DG370200 Rh5DG208500 Rh7CG204500
rosa_wichuraiana	Rw0G007250 Rw0G016800 Rw2G049270 Rw4G016330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	3 cut(s)	321, 326, 343
AciI	CCGC	6 cut(s)	27, 117, 139, 319, 324, 341
AcoI	YGGCCR	1 cut(s)	465
AfiI	CCNNNNNNNGG	1 cut(s)	80
AgsI	TTSAA	1 cut(s)	419
AjiI	CACGTC	2 cut(s)	229, 385
AjnI	CCWGG	1 cut(s)	51
AluBI	AGCT	2 cut(s)	390, 422
AluI	AGCT	2 cut(s)	390, 422
Alw26I	GTCTC	1 cut(s)	181
AoxI	GGCC	2 cut(s)	88, 465
ApeKI	GCWGC	1 cut(s)	141
Asp700I	GAANNNNTTC	1 cut(s)	312
AspLEI	GCGC	1 cut(s)	80
AspS9I	GGNCC	1 cut(s)	88
AsuHPI	GGTGA	3 cut(s)	151, 400, 448
AsuII	TTCGAA	1 cut(s)	306
BanII	GRGCYC	1 cut(s)	52
BbsI	GAAGAC	1 cut(s)	183
BbvI	GCAGC	1 cut(s)	128
BccI	CCATC	1 cut(s)	99
BciT130I	CCWGG	1 cut(s)	53
BcoDI	GTCTC	1 cut(s)	181
BfoI	RGCGCY	1 cut(s)	81
BisI	GCNGC	3 cut(s)	117, 142, 319
BlsI	GCNGC	3 cut(s)	118, 143, 320
Bme1390I	CCNGG	1 cut(s)	53
BmgBI	CACGTC	2 cut(s)	229, 385
BmgT120I	GGNCC	1 cut(s)	88
BmrFI	CCNGG	1 cut(s)	53
BpiI	GAAGAC	1 cut(s)	183
Bpu14I	TTCGAA	1 cut(s)	306
BsaJI	CCNNGG	2 cut(s)	51, 462
Bsc4I	CCNNNNNNNGG	1 cut(s)	80
Bse118I	RCCGGY	1 cut(s)	80
Bse1I	ACTGG	2 cut(s)	145, 496
Bse3DI	GCAATG	1 cut(s)	119
BseBI	CCWGG	1 cut(s)	53
BseDI	CCNNGG	2 cut(s)	51, 462
BseLI	CCNNNNNNNGG	1 cut(s)	80
BseMI	GCAATG	1 cut(s)	119
BseMII	CTCAG	1 cut(s)	313
BseNI	ACTGG	2 cut(s)	145, 496
BseRI	GAGGAG	5 cut(s)	29, 59, 323, 337, 451
BseXI	GCAGC	1 cut(s)	128
BshFI	GGCC	2 cut(s)	90, 467
BsiSI	CCGG	2 cut(s)	43, 81
BslI	CCNNNNNNNGG	1 cut(s)	80
BsmAI	GTCTC	1 cut(s)	181
BsmI	GAATGC	2 cut(s)	29, 477
BsnI	GGCC	2 cut(s)	90, 467
Bsp119I	TTCGAA	1 cut(s)	306
Bsp1286I	GDGCHC	1 cut(s)	52
BspACI	CCGC	6 cut(s)	27, 117, 139, 319, 324, 341
BspANI	GGCC	2 cut(s)	90, 467
BspCNI	CTCAG	1 cut(s)	312
BspT104I	TTCGAA	1 cut(s)	306
BsrBI	CCGCTC	3 cut(s)	321, 326, 343
BsrDI	GCAATG	1 cut(s)	119
BsrFI	RCCGGY	1 cut(s)	80
BsrI	ACTGG	2 cut(s)	145, 496
BssAI	RCCGGY	1 cut(s)	80
BssECI	CCNNGG	2 cut(s)	51, 462
Bst2UI	CCWGG	1 cut(s)	53
Bst4CI	ACNGT	3 cut(s)	175, 274, 412
BstBI	TTCGAA	1 cut(s)	306
BstC8I	GCNNGC	2 cut(s)	48, 82
BstDEI	CTNAG	1 cut(s)	299
BstH2I	RGCGCY	1 cut(s)	81
BstHHI	GCGC	1 cut(s)	80
BstMAI	GTCTC	1 cut(s)	181
BstNI	CCWGG	1 cut(s)	53
BstSCI	CCNGG	1 cut(s)	51
BstV1I	GCAGC	1 cut(s)	128
BstV2I	GAAGAC	1 cut(s)	183
BsuRI	GGCC	2 cut(s)	90, 467
BtrI	CACGTC	2 cut(s)	229, 385
BtsIMutI	CAGTG	2 cut(s)	171, 503
Cac8I	GCNNGC	2 cut(s)	48, 82
CfoI	GCGC	1 cut(s)	80
Cfr10I	RCCGGY	1 cut(s)	80
Cfr13I	GGNCC	1 cut(s)	88
CviAII	CATG	3 cut(s)	13, 59, 85
CviJI	RGCY	7 cut(s)	50, 56, 90, 311, 390, 422, 467
CviKI_1	RGCY	7 cut(s)	50, 56, 90, 311, 390, 422, 467
DdeI	CTNAG	1 cut(s)	299
EaeI	YGGCCR	1 cut(s)	465
Eco24I	GRGCYC	1 cut(s)	52
EcoRII	CCWGG	1 cut(s)	51
EcoT38I	GRGCYC	1 cut(s)	52
FaeI	CATG	3 cut(s)	16, 62, 88
FaiI	YATR	5 cut(s)	14, 60, 86, 381, 445
FatI	CATG	3 cut(s)	12, 58, 84
FauI	CCCGC	1 cut(s)	348
Fnu4HI	GCNGC	3 cut(s)	117, 142, 319
FriOI	GRGCYC	1 cut(s)	52
Fsp4HI	GCNGC	3 cut(s)	117, 142, 319
GlaI	GCGC	1 cut(s)	79
GluI	GCNGC	3 cut(s)	117, 142, 319
HaeII	RGCGCY	1 cut(s)	81
HaeIII	GGCC	2 cut(s)	90, 467
HapII	CCGG	2 cut(s)	43, 81
HhaI	GCGC	1 cut(s)	80
Hin1II	CATG	3 cut(s)	16, 62, 88
Hin6I	GCGC	1 cut(s)	78
HinP1I	GCGC	1 cut(s)	78
HincII	GTYRAC	2 cut(s)	150, 277
HindII	GTYRAC	2 cut(s)	150, 277
HinfI	GANTC	2 cut(s)	188, 303
HpaII	CCGG	2 cut(s)	43, 81
HphI	GGTGA	3 cut(s)	151, 400, 448
Hpy166II	GTNNAC	2 cut(s)	150, 277
Hpy188I	TCNGA	3 cut(s)	22, 96, 302
Hpy188III	TCNNGA	1 cut(s)	260
Hpy8I	GTNNAC	2 cut(s)	150, 277
HpyAV	CCTTC	3 cut(s)	229, 263, 446
HpyCH4III	ACNGT	3 cut(s)	175, 274, 412
HpyCH4IV	ACGT	3 cut(s)	33, 228, 384
HpyCH4V	TGCA	2 cut(s)	4, 443
HpyF3I	CTNAG	1 cut(s)	299
HpySE526I	ACGT	3 cut(s)	33, 228, 384
Hsp92II	CATG	3 cut(s)	16, 62, 88
HspAI	GCGC	1 cut(s)	78
KroI	GCCGGC	1 cut(s)	80
KroNI	GCCGGC	1 cut(s)	82
LmnI	GCTCC	1 cut(s)	326
LpnPI	CCDG	9 cut(s)	38, 56, 65, 94, 158, 414, 453, 481, 509
Lsp1109I	GCAGC	1 cut(s)	128
MaeII	ACGT	3 cut(s)	33, 228, 384
MaeIII	GTNAC	3 cut(s)	29, 229, 429
MbiI	CCGCTC	3 cut(s)	321, 326, 343
MboII	GAAGA	2 cut(s)	183, 445
MhlI	GDGCHC	1 cut(s)	52
MlyI	GAGTC	1 cut(s)	197
MroNI	GCCGGC	1 cut(s)	80
MroXI	GAANNNNTTC	1 cut(s)	312
MseI	TTAA	1 cut(s)	392
MslI	CAYNNNNRTG	1 cut(s)	22
MspA1I	CMGCKG	1 cut(s)	141
MspI	CCGG	2 cut(s)	43, 81
MspR9I	CCNGG	1 cut(s)	53
Mva1269I	GAATGC	2 cut(s)	29, 477
MvaI	CCWGG	1 cut(s)	53
NaeI	GCCGGC	1 cut(s)	82
NgoMIV	GCCGGC	1 cut(s)	80
NlaIII	CATG	3 cut(s)	16, 62, 88
NmeAIII	GCCGAG	2 cut(s)	211, 443
NmuCI	GTSAC	1 cut(s)	229
NspV	TTCGAA	1 cut(s)	306
PcsI	WCGNNNNNNNCGW	1 cut(s)	381
PctI	GAATGC	2 cut(s)	29, 477
PdiI	GCCGGC	1 cut(s)	82
PdmI	GAANNNNTTC	1 cut(s)	312
PfeI	GAWTC	1 cut(s)	303
PkrI	GCNGC	3 cut(s)	118, 143, 320
PleI	GAGTC	1 cut(s)	196
PpsI	GAGTC	1 cut(s)	196
Psp6I	CCWGG	1 cut(s)	51
PspGI	CCWGG	1 cut(s)	51
PspPI	GGNCC	1 cut(s)	88
RseI	CAYNNNNRTG	1 cut(s)	22
SaqAI	TTAA	1 cut(s)	392
SatI	GCNGC	3 cut(s)	117, 142, 319
Sau96I	GGNCC	1 cut(s)	88
SchI	GAGTC	1 cut(s)	197
ScrFI	CCNGG	1 cut(s)	53
SduI	GDGCHC	1 cut(s)	52
SetI	ASST	7 cut(s)	36, 231, 252, 387, 392, 424, 461
SfuI	TTCGAA	1 cut(s)	306
SmiMI	CAYNNNNRTG	1 cut(s)	22
SsiI	CCGC	6 cut(s)	27, 117, 139, 319, 324, 341
StyD4I	CCNGG	1 cut(s)	51
TaaI	ACNGT	3 cut(s)	175, 274, 412
TaiI	ACGT	3 cut(s)	36, 231, 387
TaqI	TCGA	2 cut(s)	261, 306
TauI	GCSGC	2 cut(s)	119, 321
TfiI	GAWTC	1 cut(s)	303
Tru1I	TTAA	1 cut(s)	392
Tru9I	TTAA	1 cut(s)	392
TscAI	CASTG	2 cut(s)	178, 503
TseFI	GTSAC	1 cut(s)	229
TseI	GCWGC	1 cut(s)	141
Tsp45I	GTSAC	1 cut(s)	229
TspRI	CASTG	2 cut(s)	178, 503
XmnI	GAANNNNTTC	1 cut(s)	312

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.