Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0001611

Physical Location & Seq

Genomic Coordinates Forward (+)

18181985 .. 18182479

Gene Structure 495 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG204500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGTCATTAGAATCCGGTAGCATTCTCCTCCGTCGAGCCCAGGCTCATGTCGTTCTCCTCCCAAGCGCCGGCATGGGCCATCTGGCACCGTTTCTACGACTTGCCGCATTGCTATCCCAAAACCACCGCTGCCACCTGACCCTCATCACCACCCACCCAACCATCTCACTCGCCGAGTCTTCTTTCATATTTGGCTTCCTCTCACGTCACTCAAGTCCATTTCCACCTCCCCGAGTCTTCTCTTATATTTTCTTCACCTCCTCAACCAGAATGCCCTCCCTCTTTGCTTACTACCATGCCGTGGCAACCACAATGAATCTGGGATTTAGTGATGATGTTATTGAAATTCCTAGTATTAATCCTGCAGTGCCCATATCTTCAGTCCCTCCGTTAAGATTTAATGGGATTTTGATCAAAATTGAGTTGAGAAATTTGGATAAGATGATTCAGATTGAAGGAATCCCATTAAAATTTGGTAGACGAGGAGATGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0047243 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

164

Amino Acids

18.16

Weight (kDa)

9.73

Isoelectric Point (pI)

68.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001611)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g47620
malus_domestica	MD16G1064500.v1.1 MD16G1276100.v1.1 MD17G1055500.v1.1
prunus_persica	Prupe.1G282300_v2.0.a1 Prupe.3G260200_v2.0.a1
pyrus_communis	pycom16g05630 pycom16g05640 pycom17g05420
rosa_chinensis	RchiOBHm_Chr2g0166721 RchiOBHm_Chr4g0438831 RchiOBHm_Chr4g0438841
rosa_laevigata	RLG00000006326 RLG00000006327 RLG00000021642
rosa_multiflora	Rmu_co8237817.1_g000001 Rmu_sc0000431.1_g000011 Rmu_sc0002181.1_g000012 Rmu_sc0002505.1_g000018 Rmu_sc0002505.1_g000020 Rmu_sc0003748.1_g000012 Rmu_sc0005433.1_g000002 Rmu_sc0007415.1_g000054 Rmu_sc0009639.1_g000019 Rmu_sc0023543.1_g000001 Rmu_sc0041865.1_g000001
rosa_roxburghii	Rroxscaffold_2G00084290 Rroxscaffold_2G00084610 Rroxscaffold_5G00379870
rosa_rugosa	Rorug02G0525100 Rorug04G0313400 Rorug04G0313400
rosa_samantha	Rh1AG297400 Rh2AG591400 Rh2BG000200 Rh2BG603100 Rh2CG574200 Rh2DG614000 Rh4AG192000 Rh4AG364400 Rh4BG375500 Rh4CG389600 Rh4DG370100 Rh4DG370200 Rh5DG208500 Rh7CG204500
rosa_wichuraiana	Rw0G007250 Rw0G016800 Rw2G049270 Rw4G016330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	85
AccB7I	CCANNNNNTGG	1 cut(s)	301
AccI	GTMKAC	1 cut(s)	478
AciI	CCGC	2 cut(s)	105, 127
AcsI	RAATTY	3 cut(s)	345, 430, 470
AcuI	CTGAAG	1 cut(s)	363
AfiI	CCNNNNNNNGG	2 cut(s)	68, 301
AgsI	TTSAA	2 cut(s)	344, 455
AjiI	CACGTC	1 cut(s)	206
AjnI	CCWGG	1 cut(s)	39
Ama87I	CYCGRG	1 cut(s)	231
AoxI	GGCC	1 cut(s)	76
ApeKI	GCWGC	1 cut(s)	129
ApoI	RAATTY	3 cut(s)	345, 430, 470
AseI	ATTAAT	1 cut(s)	357
AspLEI	GCGC	1 cut(s)	68
AspS9I	GGNCC	1 cut(s)	76
AsuHPI	GGTGA	2 cut(s)	139, 247
AvaI	CYCGRG	1 cut(s)	231
BaeGI	GKGCMC	1 cut(s)	372
BanI	GGYRCC	1 cut(s)	85
BanII	GRGCYC	1 cut(s)	40
BbsI	GAAGAC	2 cut(s)	171, 229
BbvI	GCAGC	1 cut(s)	116
BccI	CCATC	2 cut(s)	87, 170
BceAI	ACGGC	1 cut(s)	284
BciT130I	CCWGG	1 cut(s)	41
BclI	TGATCA	1 cut(s)	411
BfaI	CTAG	1 cut(s)	351
BfmI	CTRYAG	1 cut(s)	363
BfoI	RGCGCY	1 cut(s)	69
BisI	GCNGC	2 cut(s)	105, 130
BlsI	GCNGC	2 cut(s)	106, 131
Bme1390I	CCNGG	1 cut(s)	41
BmeT110I	CYCGRG	1 cut(s)	231
BmgBI	CACGTC	1 cut(s)	206
BmgT120I	GGNCC	1 cut(s)	76
BmiI	GGNNCC	1 cut(s)	87
BmrFI	CCNGG	1 cut(s)	41
BpiI	GAAGAC	2 cut(s)	171, 229
BpuEI	CTTGAG	1 cut(s)	196
BsaBI	GATNNNNATC	1 cut(s)	410
BsaJI	CCNNGG	2 cut(s)	39, 300
BsaWI	WCCGGW	1 cut(s)	14
Bsc4I	CCNNNNNNNGG	2 cut(s)	68, 301
Bse118I	RCCGGY	1 cut(s)	68
Bse3DI	GCAATG	1 cut(s)	107
Bse8I	GATNNNNATC	1 cut(s)	410
BseBI	CCWGG	1 cut(s)	41
BseDI	CCNNGG	2 cut(s)	39, 300
BseJI	GATNNNNATC	1 cut(s)	410
BseLI	CCNNNNNNNGG	2 cut(s)	68, 301
BseMI	GCAATG	1 cut(s)	107
BseRI	GAGGAG	3 cut(s)	17, 47, 250
BseSI	GKGCMC	1 cut(s)	372
BseXI	GCAGC	1 cut(s)	116
BshFI	GGCC	1 cut(s)	78
BshNI	GGYRCC	1 cut(s)	85
BsiHKCI	CYCGRG	1 cut(s)	231
BsiSI	CCGG	2 cut(s)	15, 69
BslFI	GGGAC	1 cut(s)	368
BslI	CCNNNNNNNGG	2 cut(s)	68, 301
BsmFI	GGGAC	1 cut(s)	368
BsmI	GAATGC	2 cut(s)	21, 276
BsnI	GGCC	1 cut(s)	78
BsoBI	CYCGRG	1 cut(s)	231
Bsp1286I	GDGCHC	2 cut(s)	40, 372
Bsp143I	GATC	1 cut(s)	411
BspACI	CCGC	2 cut(s)	105, 127
BspANI	GGCC	1 cut(s)	78
BspLI	GGNNCC	1 cut(s)	87
BspMAI	CTGCAG	1 cut(s)	367
BspT107I	GGYRCC	1 cut(s)	85
BsrDI	GCAATG	1 cut(s)	107
BsrFI	RCCGGY	1 cut(s)	68
BssAI	RCCGGY	1 cut(s)	68
BssECI	CCNNGG	2 cut(s)	39, 300
BssMI	GATC	1 cut(s)	411
Bst2UI	CCWGG	1 cut(s)	41
Bst4CI	ACNGT	1 cut(s)	90
BstC8I	GCNNGC	1 cut(s)	70
BstDSI	CCRYGG	1 cut(s)	300
BstH2I	RGCGCY	1 cut(s)	69
BstHHI	GCGC	1 cut(s)	68
BstKTI	GATC	1 cut(s)	414
BstMBI	GATC	1 cut(s)	411
BstNI	CCWGG	1 cut(s)	41
BstSCI	CCNGG	1 cut(s)	39
BstSFI	CTRYAG	1 cut(s)	363
BstSLI	GKGCMC	1 cut(s)	372
BstV1I	GCAGC	1 cut(s)	116
BstV2I	GAAGAC	2 cut(s)	171, 229
BsuRI	GGCC	1 cut(s)	78
BtgI	CCRYGG	1 cut(s)	300
BtrI	CACGTC	1 cut(s)	206
BtsI	GCAGTG	1 cut(s)	372
BtsIMutI	CAGTG	1 cut(s)	372
Cac8I	GCNNGC	1 cut(s)	70
CfoI	GCGC	1 cut(s)	68
Cfr10I	RCCGGY	1 cut(s)	68
Cfr13I	GGNCC	1 cut(s)	76
CviAII	CATG	3 cut(s)	47, 73, 296
CviJI	RGCY	4 cut(s)	38, 44, 78, 195
CviKI_1	RGCY	4 cut(s)	38, 44, 78, 195
DpnI	GATC	1 cut(s)	413
DpnII	GATC	1 cut(s)	411
Eco24I	GRGCYC	1 cut(s)	40
Eco57I	CTGAAG	1 cut(s)	363
Eco88I	CYCGRG	1 cut(s)	231
EcoRII	CCWGG	1 cut(s)	39
EcoT38I	GRGCYC	1 cut(s)	40
FaeI	CATG	3 cut(s)	50, 76, 299
FaiI	YATR	6 cut(s)	48, 74, 188, 246, 297, 374
FaqI	GGGAC	1 cut(s)	368
FatI	CATG	3 cut(s)	46, 72, 295
FbaI	TGATCA	1 cut(s)	411
FblI	GTMKAC	1 cut(s)	478
Fnu4HI	GCNGC	2 cut(s)	105, 130
FriOI	GRGCYC	1 cut(s)	40
Fsp4HI	GCNGC	2 cut(s)	105, 130
FspBI	CTAG	1 cut(s)	351
GlaI	GCGC	1 cut(s)	67
GluI	GCNGC	2 cut(s)	105, 130
HaeII	RGCGCY	1 cut(s)	69
HaeIII	GGCC	1 cut(s)	78
HapII	CCGG	2 cut(s)	15, 69
HhaI	GCGC	1 cut(s)	68
Hin1II	CATG	3 cut(s)	50, 76, 299
Hin6I	GCGC	1 cut(s)	66
HinP1I	GCGC	1 cut(s)	66
HinfI	GANTC	6 cut(s)	11, 176, 234, 316, 445, 459
HpaII	CCGG	2 cut(s)	15, 69
HphI	GGTGA	2 cut(s)	139, 247
Hpy166II	GTNNAC	1 cut(s)	479
Hpy188I	TCNGA	1 cut(s)	450
Hpy8I	GTNNAC	1 cut(s)	479
Hpy99I	CGWCG	1 cut(s)	36
HpyAV	CCTTC	1 cut(s)	449
HpyCH4III	ACNGT	1 cut(s)	90
HpyCH4IV	ACGT	1 cut(s)	205
HpyCH4V	TGCA	1 cut(s)	365
HpySE526I	ACGT	1 cut(s)	205
Hsp92II	CATG	3 cut(s)	50, 76, 299
HspAI	GCGC	1 cut(s)	66
KroI	GCCGGC	1 cut(s)	68
KroNI	GCCGGC	1 cut(s)	70
Ksp22I	TGATCA	1 cut(s)	411
Kzo9I	GATC	1 cut(s)	411
LpnPI	CCDG	9 cut(s)	26, 28, 53, 68, 82, 149, 280, 305, 375
Lsp1109I	GCAGC	1 cut(s)	116
MaeI	CTAG	1 cut(s)	351
MaeII	ACGT	1 cut(s)	205
MaeIII	GTNAC	1 cut(s)	206
MalI	GATC	1 cut(s)	413
MboI	GATC	1 cut(s)	411
MboII	GAAGA	4 cut(s)	171, 229, 244, 369
MhlI	GDGCHC	2 cut(s)	40, 372
MluCI	AATT	4 cut(s)	345, 417, 430, 470
MlyI	GAGTC	2 cut(s)	185, 243
MroNI	GCCGGC	1 cut(s)	68
MseI	TTAA	4 cut(s)	357, 392, 399, 467
MspA1I	CMGCKG	1 cut(s)	129
MspI	CCGG	2 cut(s)	15, 69
MspR9I	CCNGG	1 cut(s)	41
Mva1269I	GAATGC	2 cut(s)	21, 276
MvaI	CCWGG	1 cut(s)	41
NaeI	GCCGGC	1 cut(s)	70
NdeII	GATC	1 cut(s)	411
NgoMIV	GCCGGC	1 cut(s)	68
NlaIII	CATG	3 cut(s)	50, 76, 299
NlaIV	GGNNCC	1 cut(s)	87
NmeAIII	GCCGAG	1 cut(s)	199
NmuCI	GTSAC	1 cut(s)	206
PctI	GAATGC	2 cut(s)	21, 276
PdiI	GCCGGC	1 cut(s)	70
PfeI	GAWTC	4 cut(s)	11, 316, 445, 459
PflMI	CCANNNNNTGG	1 cut(s)	301
PkrI	GCNGC	2 cut(s)	106, 131
PleI	GAGTC	2 cut(s)	184, 242
PpsI	GAGTC	2 cut(s)	184, 242
PshBI	ATTAAT	1 cut(s)	357
Psp6I	CCWGG	1 cut(s)	39
PspGI	CCWGG	1 cut(s)	39
PspN4I	GGNNCC	1 cut(s)	87
PspPI	GGNCC	1 cut(s)	76
PstI	CTGCAG	1 cut(s)	367
SaqAI	TTAA	4 cut(s)	357, 392, 399, 467
SatI	GCNGC	2 cut(s)	105, 130
Sau3AI	GATC	1 cut(s)	411
Sau96I	GGNCC	1 cut(s)	76
SchI	GAGTC	2 cut(s)	185, 243
ScrFI	CCNGG	1 cut(s)	41
SduI	GDGCHC	2 cut(s)	40, 372
SetI	ASST	4 cut(s)	138, 208, 229, 260
SfcI	CTRYAG	1 cut(s)	363
SmlI	CTYRAG	1 cut(s)	211
SmoI	CTYRAG	1 cut(s)	211
Sse9I	AATT	4 cut(s)	345, 417, 430, 470
SsiI	CCGC	2 cut(s)	105, 127
SspMI	CTAG	1 cut(s)	351
StyD4I	CCNGG	1 cut(s)	39
TaaI	ACNGT	1 cut(s)	90
TaiI	ACGT	1 cut(s)	208
TaqI	TCGA	1 cut(s)	34
TasI	AATT	4 cut(s)	345, 417, 430, 470
TauI	GCSGC	1 cut(s)	107
TfiI	GAWTC	4 cut(s)	11, 316, 445, 459
Tru1I	TTAA	4 cut(s)	357, 392, 399, 467
Tru9I	TTAA	4 cut(s)	357, 392, 399, 467
TscAI	CASTG	1 cut(s)	372
TseFI	GTSAC	1 cut(s)	206
TseI	GCWGC	1 cut(s)	129
Tsp45I	GTSAC	1 cut(s)	206
TspDTI	ATGAA	2 cut(s)	175, 329
TspGWI	ACGGA	2 cut(s)	20, 378
TspRI	CASTG	1 cut(s)	372
Van91I	CCANNNNNTGG	1 cut(s)	301
VspI	ATTAAT	1 cut(s)	357
XapI	RAATTY	3 cut(s)	345, 430, 470
XcmI	CCANNNNNNNNNTGG	1 cut(s)	316
XmiI	GTMKAC	1 cut(s)	478
XspI	CTAG	1 cut(s)	351

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.