Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0001611

Physical Location & Seq

Genomic Coordinates Forward (+)

58929915 .. 58930687

Gene Structure 773 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG370200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGCAGGATGGTCCAAAACTCCCTAGATTTAATGGGATTTTGATCAATACTTTCGACGGGATAGAAACAGAGGCGGTGGAGTTGCTGAATGGAGGAAAAGTAATCGAAGCGTTGCCTCCACTATTTACTGTTGGACCTTTAGTGCCCTGTGAGTTTGAGAAGGTTGATGATGATCAATTGGGAAATGCACAACTATTGAAGTGGCTTGATGATCAGGCTGAAGGGTCAGTGGTGTATGTGAGCTTTGGAAGCAGAACAGCTCTCTCAAGAGATCAGATCAAAGAGCTTGGTGATGGGTTGGTGAGATGTGGGTTTCGGTTTCTGTGGGTGGTGAAGGAGAAGCTAGTAGACAGAGAGGAAGAAGAGGTGGTGGAAGCTGCCTGGTATGGTGTAAGAATCCTAGCTTGGCCACAAAATGGGGATCAGAAGCTCAATGCAGAGGTGGTTGAGAGAAGTGGGCTTGGGATATGGGCCAGAACTTGGGCCTGGACCGGAGATGACCCGGTGGTGGTGGTGAAGGGGGAAGACATTGCTGTGAAGATCAAAGAGCTGATGCAGAGTGAAGAGCTCAGAGTGAAGGCTTTGAAGATTCGAGAAGAGGCTAAAAGGGTTGCTGGGTGCCGTGAGAAAATTTTCAAGGGACTGATTGAGGAGTGGAGTAAGAATACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0047243 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

223

Amino Acids

25.1

Weight (kDa)

4.85

Isoelectric Point (pI)

26.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001611)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g47620
malus_domestica	MD16G1064500.v1.1 MD16G1276100.v1.1 MD17G1055500.v1.1
prunus_persica	Prupe.1G282300_v2.0.a1 Prupe.3G260200_v2.0.a1
pyrus_communis	pycom16g05630 pycom16g05640 pycom17g05420
rosa_chinensis	RchiOBHm_Chr2g0166721 RchiOBHm_Chr4g0438831 RchiOBHm_Chr4g0438841
rosa_laevigata	RLG00000006326 RLG00000006327 RLG00000021642
rosa_multiflora	Rmu_co8237817.1_g000001 Rmu_sc0000431.1_g000011 Rmu_sc0002181.1_g000012 Rmu_sc0002505.1_g000018 Rmu_sc0002505.1_g000020 Rmu_sc0003748.1_g000012 Rmu_sc0005433.1_g000002 Rmu_sc0007415.1_g000054 Rmu_sc0009639.1_g000019 Rmu_sc0023543.1_g000001 Rmu_sc0041865.1_g000001
rosa_roxburghii	Rroxscaffold_2G00084290 Rroxscaffold_2G00084610 Rroxscaffold_5G00379870
rosa_rugosa	Rorug02G0525100 Rorug04G0313400 Rorug04G0313400
rosa_samantha	Rh1AG297400 Rh2AG591400 Rh2BG000200 Rh2BG603100 Rh2CG574200 Rh2DG614000 Rh4AG192000 Rh4AG364400 Rh4BG375500 Rh4CG389600 Rh4DG370100 Rh4DG370200 Rh5DG208500 Rh7CG204500
rosa_wichuraiana	Rw0G007250 Rw0G016800 Rw2G049270 Rw4G016330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	618
AccB7I	CCANNNNNTGG	2 cut(s)	416, 480
AccI	GTMKAC	1 cut(s)	348
AciI	CCGC	1 cut(s)	74
AclWI	GGATC	1 cut(s)	429
AcoI	YGGCCR	1 cut(s)	407
AcsI	RAATTY	1 cut(s)	630
AcuI	CTGAAG	1 cut(s)	240
AfiI	CCNNNNNNNGG	3 cut(s)	416, 480, 508
AgsI	TTSAA	3 cut(s)	199, 586, 637
AjnI	CCWGG	2 cut(s)	380, 485
AjuI	GAANNNNNNNTTGG	2 cut(s)	388, 420
AluBI	AGCT	9 cut(s)	243, 260, 286, 343, 377, 404, 430, 550, 568
AluI	AGCT	9 cut(s)	243, 260, 286, 343, 377, 404, 430, 550, 568
Alw21I	GWGCWC	1 cut(s)	570
AlwI	GGATC	1 cut(s)	429
AoxI	GGCC	3 cut(s)	407, 471, 483
ApeKI	GCWGC	1 cut(s)	377
ApoI	RAATTY	1 cut(s)	630
Asp700I	GAANNNNTTC	1 cut(s)	632
AspS9I	GGNCC	5 cut(s)	11, 134, 471, 483, 489
AsuC2I	CCSGG	1 cut(s)	503
AsuHPI	GGTGA	4 cut(s)	302, 313, 343, 526
AvaII	GGWCC	3 cut(s)	11, 134, 489
BaeGI	GKGCMC	1 cut(s)	147
BalI	TGGCCA	1 cut(s)	409
BanI	GGYRCC	1 cut(s)	618
BanII	GRGCYC	1 cut(s)	570
BbsI	GAAGAC	1 cut(s)	531
Bbv12I	GWGCWC	1 cut(s)	570
BbvI	GCAGC	1 cut(s)	364
BccI	CCATC	2 cut(s)	2, 287
BceAI	ACGGC	1 cut(s)	606
BciT130I	CCWGG	2 cut(s)	382, 487
BclI	TGATCA	3 cut(s)	42, 172, 211
BcnI	CCSGG	1 cut(s)	503
BfaI	CTAG	3 cut(s)	24, 344, 401
BisI	GCNGC	1 cut(s)	378
BlsI	GCNGC	1 cut(s)	379
Bme1390I	CCNGG	3 cut(s)	382, 487, 503
Bme18I	GGWCC	3 cut(s)	11, 134, 489
BmgT120I	GGNCC	5 cut(s)	11, 134, 471, 483, 489
BmiI	GGNNCC	1 cut(s)	620
BmrFI	CCNGG	3 cut(s)	382, 487, 503
BmsI	GCATC	1 cut(s)	543
BpiI	GAAGAC	1 cut(s)	531
BpuEI	CTTGAG	1 cut(s)	250
BpuMI	CCSGG	1 cut(s)	503
BsaBI	GATNNNNATC	2 cut(s)	41, 171
BsaWI	WCCGGW	1 cut(s)	491
BsaXI	ACNNNNNCTCC	2 cut(s)	84, 114
Bsc4I	CCNNNNNNNGG	3 cut(s)	416, 480, 508
Bse3DI	GCAATG	1 cut(s)	528
Bse8I	GATNNNNATC	2 cut(s)	41, 171
BseBI	CCWGG	2 cut(s)	382, 487
BseGI	GGATG	1 cut(s)	13
BseJI	GATNNNNATC	2 cut(s)	41, 171
BseLI	CCNNNNNNNGG	3 cut(s)	416, 480, 508
BseMI	GCAATG	1 cut(s)	528
BseMII	CTCAG	1 cut(s)	583
BseRI	GAGGAG	1 cut(s)	665
BseSI	GKGCMC	1 cut(s)	147
BseXI	GCAGC	1 cut(s)	364
BseYI	CCCAGC	1 cut(s)	614
BshFI	GGCC	3 cut(s)	409, 473, 485
BshNI	GGYRCC	1 cut(s)	618
BsiHKAI	GWGCWC	1 cut(s)	570
BsiSI	CCGG	2 cut(s)	492, 503
BslFI	GGGAC	1 cut(s)	654
BslI	CCNNNNNNNGG	3 cut(s)	416, 480, 508
BsmFI	GGGAC	1 cut(s)	654
BsnI	GGCC	3 cut(s)	409, 473, 485
Bsp1286I	GDGCHC	2 cut(s)	147, 570
Bsp143I	GATC	7 cut(s)	42, 172, 211, 271, 276, 421, 540
BspACI	CCGC	1 cut(s)	74
BspANI	GGCC	3 cut(s)	409, 473, 485
BspCNI	CTCAG	1 cut(s)	582
BspLI	GGNNCC	1 cut(s)	620
BspPI	GGATC	1 cut(s)	429
BspQI	GCTCTTC	1 cut(s)	558
BspT107I	GGYRCC	1 cut(s)	618
BsrDI	GCAATG	1 cut(s)	528
BssMI	GATC	7 cut(s)	42, 172, 211, 271, 276, 421, 540
Bst2UI	CCWGG	2 cut(s)	382, 487
Bst4CI	ACNGT	1 cut(s)	130
Bst6I	CTCTTC	3 cut(s)	357, 558, 591
BstDEI	CTNAG	1 cut(s)	569
BstF5I	GGATG	1 cut(s)	13
BstKTI	GATC	7 cut(s)	45, 175, 214, 274, 279, 424, 543
BstMBI	GATC	7 cut(s)	42, 172, 211, 271, 276, 421, 540
BstMWI	GCNNNNNNNGC	1 cut(s)	249
BstNI	CCWGG	2 cut(s)	382, 487
BstSCI	CCNGG	3 cut(s)	380, 485, 501
BstSLI	GKGCMC	1 cut(s)	147
BstV1I	GCAGC	1 cut(s)	364
BstV2I	GAAGAC	1 cut(s)	531
BsuRI	GGCC	3 cut(s)	409, 473, 485
BtsCI	GGATG	1 cut(s)	13
BtsIMutI	CAGTG	1 cut(s)	234
Cfr13I	GGNCC	5 cut(s)	11, 134, 471, 483, 489
DdeI	CTNAG	1 cut(s)	569
DpnI	GATC	7 cut(s)	44, 174, 213, 273, 278, 423, 542
DpnII	GATC	7 cut(s)	42, 172, 211, 271, 276, 421, 540
EaeI	YGGCCR	1 cut(s)	407
Eam1104I	CTCTTC	3 cut(s)	357, 558, 591
EarI	CTCTTC	3 cut(s)	357, 558, 591
Ecl136II	GAGCTC	1 cut(s)	568
Eco24I	GRGCYC	1 cut(s)	570
Eco47I	GGWCC	3 cut(s)	11, 134, 489
Eco53kI	GAGCTC	1 cut(s)	568
Eco57I	CTGAAG	1 cut(s)	240
EcoICRI	GAGCTC	1 cut(s)	568
EcoRII	CCWGG	2 cut(s)	380, 485
EcoT38I	GRGCYC	1 cut(s)	570
FaiI	YATR	3 cut(s)	237, 387, 469
FaqI	GGGAC	1 cut(s)	654
FbaI	TGATCA	3 cut(s)	42, 172, 211
FblI	GTMKAC	1 cut(s)	348
Fnu4HI	GCNGC	1 cut(s)	378
FokI	GGATG	1 cut(s)	20
FriOI	GRGCYC	1 cut(s)	570
Fsp4HI	GCNGC	1 cut(s)	378
FspBI	CTAG	3 cut(s)	24, 344, 401
GluI	GCNGC	1 cut(s)	378
GsaI	CCCAGC	1 cut(s)	618
HaeIII	GGCC	3 cut(s)	409, 473, 485
HapII	CCGG	2 cut(s)	492, 503
HinfI	GANTC	2 cut(s)	396, 589
HpaII	CCGG	2 cut(s)	492, 503
HphI	GGTGA	4 cut(s)	302, 313, 343, 526
Hpy166II	GTNNAC	1 cut(s)	349
Hpy188I	TCNGA	3 cut(s)	276, 426, 572
Hpy188III	TCNNGA	2 cut(s)	267, 593
Hpy8I	GTNNAC	1 cut(s)	349
Hpy99I	CGWCG	1 cut(s)	59
HpyAV	CCTTC	5 cut(s)	154, 215, 328, 511, 571
HpyCH4III	ACNGT	1 cut(s)	130
HpyCH4V	TGCA	4 cut(s)	4, 188, 437, 556
HpyF10VI	GCNNNNNNNGC	1 cut(s)	249
HpyF3I	CTNAG	1 cut(s)	569
Ksp22I	TGATCA	3 cut(s)	42, 172, 211
Kzo9I	GATC	7 cut(s)	42, 172, 211, 271, 276, 421, 540
LguI	GCTCTTC	1 cut(s)	558
Lsp1109I	GCAGC	1 cut(s)	364
LweI	GCATC	1 cut(s)	543
MaeI	CTAG	3 cut(s)	24, 344, 401
MalI	GATC	7 cut(s)	44, 174, 213, 273, 278, 423, 542
MboI	GATC	7 cut(s)	42, 172, 211, 271, 276, 421, 540
MboII	GAAGA	7 cut(s)	371, 374, 536, 550, 575, 598, 608
MfeI	CAATTG	1 cut(s)	176
MhlI	GDGCHC	2 cut(s)	147, 570
MlsI	TGGCCA	1 cut(s)	409
MluCI	AATT	2 cut(s)	176, 630
MluNI	TGGCCA	1 cut(s)	409
MmeI	TCCRAC	1 cut(s)	112
MnlI	CCTC	8 cut(s)	64, 86, 126, 349, 358, 433, 592, 643
Mox20I	TGGCCA	1 cut(s)	409
MroXI	GAANNNNTTC	1 cut(s)	632
MscI	TGGCCA	1 cut(s)	409
MseI	TTAA	1 cut(s)	30
MslI	CAYNNNNRTG	1 cut(s)	533
Msp20I	TGGCCA	1 cut(s)	409
MspI	CCGG	2 cut(s)	492, 503
MspR9I	CCNGG	3 cut(s)	382, 487, 503
MunI	CAATTG	1 cut(s)	176
MvaI	CCWGG	2 cut(s)	382, 487
MwoI	GCNNNNNNNGC	1 cut(s)	249
NciI	CCSGG	1 cut(s)	503
NdeII	GATC	7 cut(s)	42, 172, 211, 271, 276, 421, 540
NlaIV	GGNNCC	1 cut(s)	620
PciSI	GCTCTTC	1 cut(s)	558
PdmI	GAANNNNTTC	1 cut(s)	632
PfeI	GAWTC	2 cut(s)	396, 589
PflMI	CCANNNNNTGG	2 cut(s)	416, 480
PkrI	GCNGC	1 cut(s)	379
Psp124BI	GAGCTC	1 cut(s)	570
Psp6I	CCWGG	2 cut(s)	380, 485
PspFI	CCCAGC	1 cut(s)	614
PspGI	CCWGG	2 cut(s)	380, 485
PspN4I	GGNNCC	1 cut(s)	620
PspPI	GGNCC	5 cut(s)	11, 134, 471, 483, 489
RseI	CAYNNNNRTG	1 cut(s)	533
SacI	GAGCTC	1 cut(s)	570
SapI	GCTCTTC	1 cut(s)	558
SaqAI	TTAA	1 cut(s)	30
SatI	GCNGC	1 cut(s)	378
Sau3AI	GATC	7 cut(s)	42, 172, 211, 271, 276, 421, 540
Sau96I	GGNCC	5 cut(s)	11, 134, 471, 483, 489
ScrFI	CCNGG	3 cut(s)	382, 487, 503
SduI	GDGCHC	2 cut(s)	147, 570
SfaNI	GCATC	1 cut(s)	543
SinI	GGWCC	3 cut(s)	11, 134, 489
SmiMI	CAYNNNNRTG	1 cut(s)	533
SmlI	CTYRAG	1 cut(s)	265
SmoI	CTYRAG	1 cut(s)	265
Sse9I	AATT	2 cut(s)	176, 630
SsiI	CCGC	1 cut(s)	74
SspMI	CTAG	3 cut(s)	24, 344, 401
SstI	GAGCTC	1 cut(s)	570
StyD4I	CCNGG	3 cut(s)	380, 485, 501
TaaI	ACNGT	1 cut(s)	130
TaqI	TCGA	3 cut(s)	54, 105, 592
TasI	AATT	2 cut(s)	176, 630
TfiI	GAWTC	2 cut(s)	396, 589
Tru1I	TTAA	1 cut(s)	30
Tru9I	TTAA	1 cut(s)	30
TscAI	CASTG	1 cut(s)	234
TseI	GCWGC	1 cut(s)	377
TspRI	CASTG	1 cut(s)	234
Van91I	CCANNNNNTGG	2 cut(s)	416, 480
VpaK11BI	GGWCC	3 cut(s)	11, 134, 489
XapI	RAATTY	1 cut(s)	630
XmiI	GTMKAC	1 cut(s)	348
XmnI	GAANNNNTTC	1 cut(s)	632
XspI	CTAG	3 cut(s)	24, 344, 401

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.