Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0001611

Physical Location & Seq

Genomic Coordinates Reverse (-)

6268113 .. 6268484

Gene Structure 372 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000006327

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGTCATCAGAATCCGGTAACGTCCTCCTCCGGCGAGCCCAGGCTCATGTCGTTCTCCTCCCAAGCGCCGGCATGGGCCATGTGACACCCTTTCTACGACTTGGCTCACTGCTATCCCAAAACCACCGCTGCCAGCTGACCCATCACCACTCACCCCACCGTCTCACTCGCCGAGTCTTCTCTCATCTCTCGCTTCCTCTCAGATTTCCCTCGCGTCACTCAACTCCATTGCTACCTCCTTCCTCTGGACTCCACCACCGCCAACTCAACCGACCCCTTCTTCCTCAGATTCGAAGCCATTCGTCGCTCCGCTCATCTCCTCTCTCCCTTGCTCTCCTCTCTCTCACCACCTCCCTCTGCTCTCGTTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0047243 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

124

Amino Acids

13.7

Weight (kDa)

12.0

Isoelectric Point (pI)

76.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001611)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g47620
malus_domestica	MD16G1064500.v1.1 MD16G1276100.v1.1 MD17G1055500.v1.1
prunus_persica	Prupe.1G282300_v2.0.a1 Prupe.3G260200_v2.0.a1
pyrus_communis	pycom16g05630 pycom16g05640 pycom17g05420
rosa_chinensis	RchiOBHm_Chr2g0166721 RchiOBHm_Chr4g0438831 RchiOBHm_Chr4g0438841
rosa_laevigata	RLG00000006326 RLG00000006327 RLG00000021642
rosa_multiflora	Rmu_co8237817.1_g000001 Rmu_sc0000431.1_g000011 Rmu_sc0002181.1_g000012 Rmu_sc0002505.1_g000018 Rmu_sc0002505.1_g000020 Rmu_sc0003748.1_g000012 Rmu_sc0005433.1_g000002 Rmu_sc0007415.1_g000054 Rmu_sc0009639.1_g000019 Rmu_sc0023543.1_g000001 Rmu_sc0041865.1_g000001
rosa_roxburghii	Rroxscaffold_2G00084290 Rroxscaffold_2G00084610 Rroxscaffold_5G00379870
rosa_rugosa	Rorug02G0525100 Rorug04G0313400 Rorug04G0313400
rosa_samantha	Rh1AG297400 Rh2AG591400 Rh2BG000200 Rh2BG603100 Rh2CG574200 Rh2DG614000 Rh4AG192000 Rh4AG364400 Rh4BG375500 Rh4CG389600 Rh4DG370100 Rh4DG370200 Rh5DG208500 Rh7CG204500
rosa_wichuraiana	Rw0G007250 Rw0G016800 Rw2G049270 Rw4G016330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	312
AccII	CGCG	1 cut(s)	214
AciI	CCGC	3 cut(s)	127, 259, 310
AfiI	CCNNNNNNNGG	2 cut(s)	68, 245
AjnI	CCWGG	1 cut(s)	39
AluBI	AGCT	1 cut(s)	136
AluI	AGCT	1 cut(s)	136
Alw26I	GTCTC	1 cut(s)	167
AoxI	GGCC	1 cut(s)	76
ApeKI	GCWGC	1 cut(s)	129
Asp700I	GAANNNNTTC	1 cut(s)	298
AspLEI	GCGC	1 cut(s)	68
AspS9I	GGNCC	1 cut(s)	76
AsuHPI	GGTGA	3 cut(s)	137, 144, 337
AsuII	TTCGAA	1 cut(s)	292
BanII	GRGCYC	1 cut(s)	40
BbsI	GAAGAC	1 cut(s)	169
BbvI	GCAGC	1 cut(s)	116
BccI	CCATC	1 cut(s)	150
BciT130I	CCWGG	1 cut(s)	41
BcoDI	GTCTC	1 cut(s)	167
BfoI	RGCGCY	1 cut(s)	69
BisI	GCNGC	1 cut(s)	130
BlsI	GCNGC	1 cut(s)	131
Bme1390I	CCNGG	1 cut(s)	41
BmgT120I	GGNCC	1 cut(s)	76
BmrFI	CCNGG	1 cut(s)	41
BpiI	GAAGAC	1 cut(s)	169
Bpu14I	TTCGAA	1 cut(s)	292
BsaJI	CCNNGG	1 cut(s)	39
BsaWI	WCCGGW	1 cut(s)	14
Bsc4I	CCNNNNNNNGG	2 cut(s)	68, 245
Bse118I	RCCGGY	1 cut(s)	68
Bse3DI	GCAATG	1 cut(s)	227
BseBI	CCWGG	1 cut(s)	41
BseDI	CCNNGG	1 cut(s)	39
BseLI	CCNNNNNNNGG	2 cut(s)	68, 245
BseMI	GCAATG	1 cut(s)	227
BseMII	CTCAG	2 cut(s)	214, 299
BseRI	GAGGAG	4 cut(s)	17, 47, 309, 326
BseXI	GCAGC	1 cut(s)	116
Bsh1236I	CGCG	1 cut(s)	214
BshFI	GGCC	1 cut(s)	78
BsiSI	CCGG	3 cut(s)	15, 31, 69
BslI	CCNNNNNNNGG	2 cut(s)	68, 245
BsmAI	GTCTC	1 cut(s)	167
BsmBI	CGTCTC	1 cut(s)	167
BsnI	GGCC	1 cut(s)	78
Bsp119I	TTCGAA	1 cut(s)	292
Bsp1286I	GDGCHC	1 cut(s)	40
BspACI	CCGC	3 cut(s)	127, 259, 310
BspANI	GGCC	1 cut(s)	78
BspCNI	CTCAG	2 cut(s)	213, 298
BspFNI	CGCG	1 cut(s)	214
BspT104I	TTCGAA	1 cut(s)	292
BsrBI	CCGCTC	1 cut(s)	312
BsrDI	GCAATG	1 cut(s)	227
BsrFI	RCCGGY	1 cut(s)	68
BssAI	RCCGGY	1 cut(s)	68
BssECI	CCNNGG	1 cut(s)	39
Bst2UI	CCWGG	1 cut(s)	41
Bst4CI	ACNGT	1 cut(s)	161
BstBI	TTCGAA	1 cut(s)	292
BstC8I	GCNNGC	3 cut(s)	36, 70, 134
BstDEI	CTNAG	2 cut(s)	200, 285
BstFNI	CGCG	1 cut(s)	214
BstH2I	RGCGCY	1 cut(s)	69
BstHHI	GCGC	1 cut(s)	68
BstMAI	GTCTC	1 cut(s)	167
BstNI	CCWGG	1 cut(s)	41
BstSCI	CCNGG	1 cut(s)	39
BstUI	CGCG	1 cut(s)	214
BstV1I	GCAGC	1 cut(s)	116
BstV2I	GAAGAC	1 cut(s)	169
BsuRI	GGCC	1 cut(s)	78
BtsI	GCAGTG	1 cut(s)	107
BtsIMutI	CAGTG	1 cut(s)	107
Cac8I	GCNNGC	3 cut(s)	36, 70, 134
CfoI	GCGC	1 cut(s)	68
Cfr10I	RCCGGY	1 cut(s)	68
Cfr13I	GGNCC	1 cut(s)	76
CseI	GACGC	1 cut(s)	203
CviAII	CATG	3 cut(s)	47, 73, 80
CviJI	RGCY	6 cut(s)	38, 44, 78, 105, 136, 297
CviKI_1	RGCY	6 cut(s)	38, 44, 78, 105, 136, 297
DdeI	CTNAG	2 cut(s)	200, 285
Eco24I	GRGCYC	1 cut(s)	40
EcoRII	CCWGG	1 cut(s)	39
EcoT38I	GRGCYC	1 cut(s)	40
Esp3I	CGTCTC	1 cut(s)	167
FaeI	CATG	3 cut(s)	50, 76, 83
FaiI	YATR	4 cut(s)	48, 74, 81, 370
FatI	CATG	3 cut(s)	46, 72, 79
Fnu4HI	GCNGC	1 cut(s)	130
FriOI	GRGCYC	1 cut(s)	40
Fsp4HI	GCNGC	1 cut(s)	130
GlaI	GCGC	1 cut(s)	67
GluI	GCNGC	1 cut(s)	130
HaeII	RGCGCY	1 cut(s)	69
HaeIII	GGCC	1 cut(s)	78
HapII	CCGG	3 cut(s)	15, 31, 69
HgaI	GACGC	1 cut(s)	203
HhaI	GCGC	1 cut(s)	68
Hin1II	CATG	3 cut(s)	50, 76, 83
Hin6I	GCGC	1 cut(s)	66
HinP1I	GCGC	1 cut(s)	66
HinfI	GANTC	4 cut(s)	11, 174, 249, 289
HpaII	CCGG	3 cut(s)	15, 31, 69
HphI	GGTGA	3 cut(s)	137, 144, 337
Hpy188I	TCNGA	3 cut(s)	10, 203, 288
Hpy188III	TCNNGA	1 cut(s)	246
Hpy99I	CGWCG	1 cut(s)	307
HpyAV	CCTTC	2 cut(s)	249, 287
HpyCH4III	ACNGT	1 cut(s)	161
HpyCH4IV	ACGT	1 cut(s)	21
HpyF3I	CTNAG	2 cut(s)	200, 285
HpySE526I	ACGT	1 cut(s)	21
Hsp92II	CATG	3 cut(s)	50, 76, 83
HspAI	GCGC	1 cut(s)	66
KroI	GCCGGC	1 cut(s)	68
KroNI	GCCGGC	1 cut(s)	70
LmnI	GCTCC	1 cut(s)	312
LpnPI	CCDG	7 cut(s)	26, 28, 44, 53, 82, 146, 231
Lsp1109I	GCAGC	1 cut(s)	116
MaeII	ACGT	1 cut(s)	21
MaeIII	GTNAC	3 cut(s)	17, 82, 215
MbiI	CCGCTC	1 cut(s)	312
MboII	GAAGA	2 cut(s)	169, 272
MhlI	GDGCHC	1 cut(s)	40
MlyI	GAGTC	2 cut(s)	183, 243
MroNI	GCCGGC	1 cut(s)	68
MroXI	GAANNNNTTC	1 cut(s)	298
MspA1I	CMGCKG	2 cut(s)	129, 136
MspI	CCGG	3 cut(s)	15, 31, 69
MspR9I	CCNGG	1 cut(s)	41
MvaI	CCWGG	1 cut(s)	41
MvnI	CGCG	1 cut(s)	214
NaeI	GCCGGC	1 cut(s)	70
NgoMIV	GCCGGC	1 cut(s)	68
NlaIII	CATG	3 cut(s)	50, 76, 83
NmeAIII	GCCGAG	1 cut(s)	197
NmuCI	GTSAC	2 cut(s)	82, 215
NspV	TTCGAA	1 cut(s)	292
PdiI	GCCGGC	1 cut(s)	70
PdmI	GAANNNNTTC	1 cut(s)	298
PfeI	GAWTC	2 cut(s)	11, 289
PkrI	GCNGC	1 cut(s)	131
PleI	GAGTC	2 cut(s)	182, 243
PpsI	GAGTC	2 cut(s)	182, 243
Psp6I	CCWGG	1 cut(s)	39
PspGI	CCWGG	1 cut(s)	39
PspPI	GGNCC	1 cut(s)	76
PvuII	CAGCTG	1 cut(s)	136
SatI	GCNGC	1 cut(s)	130
Sau96I	GGNCC	1 cut(s)	76
SchI	GAGTC	2 cut(s)	183, 243
ScrFI	CCNGG	1 cut(s)	41
SduI	GDGCHC	1 cut(s)	40
SetI	ASST	4 cut(s)	24, 138, 238, 353
SfuI	TTCGAA	1 cut(s)	292
SsiI	CCGC	3 cut(s)	127, 259, 310
StyD4I	CCNGG	1 cut(s)	39
TaaI	ACNGT	1 cut(s)	161
TaiI	ACGT	1 cut(s)	24
TaqI	TCGA	1 cut(s)	292
TfiI	GAWTC	2 cut(s)	11, 289
TscAI	CASTG	1 cut(s)	114
TseFI	GTSAC	2 cut(s)	82, 215
TseI	GCWGC	1 cut(s)	129
Tsp45I	GTSAC	2 cut(s)	82, 215
TspRI	CASTG	1 cut(s)	114
XmnI	GAANNNNTTC	1 cut(s)	298

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.