Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0041865.1

Orthogroup ID

OG0001611

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 513

Gene Structure 512 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0041865.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 512 bp

atgtcagattccggtgatcaaagttttgttcatgtcgctctccttcccagcgccggcatgggtcacctcacgcccttccttcgactcgctgctttactcacagcacacaatgttcgggtcacattcatcactccaattccaaccgtctcacttgcagagtcgcagagtttatctcaattgtccaccaccttccctcagatcactcaaaagcatcttcatctccttccacttgatgagccgtcggccaattcagaagaccccttttaccaccattttgagttgattcgccgctcctctcacctacttcctcctcttttatcttcactctctccacctctctcagctatgatcacagatatgagcttctcctccactgttattcccattaccgattctcttggacttcctaactacattttcttcacatcatctgccaaaatgttgacactttatgtgtccttccacaccatgctcggcccacaccgagaaatcaaagatggtctcgaagtttc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0047243 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

171

Amino Acids

18.76

Weight (kDa)

6.01

Isoelectric Point (pI)

62.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001611)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g47620
malus_domestica	MD16G1064500.v1.1 MD16G1276100.v1.1 MD17G1055500.v1.1
prunus_persica	Prupe.1G282300_v2.0.a1 Prupe.3G260200_v2.0.a1
pyrus_communis	pycom16g05630 pycom16g05640 pycom17g05420
rosa_chinensis	RchiOBHm_Chr2g0166721 RchiOBHm_Chr4g0438831 RchiOBHm_Chr4g0438841
rosa_laevigata	RLG00000006326 RLG00000006327 RLG00000021642
rosa_multiflora	Rmu_co8237817.1_g000001 Rmu_sc0000431.1_g000011 Rmu_sc0002181.1_g000012 Rmu_sc0002505.1_g000018 Rmu_sc0002505.1_g000020 Rmu_sc0003748.1_g000012 Rmu_sc0005433.1_g000002 Rmu_sc0007415.1_g000054 Rmu_sc0009639.1_g000019 Rmu_sc0023543.1_g000001 Rmu_sc0041865.1_g000001
rosa_roxburghii	Rroxscaffold_2G00084290 Rroxscaffold_2G00084610 Rroxscaffold_5G00379870
rosa_rugosa	Rorug02G0525100 Rorug04G0313400 Rorug04G0313400
rosa_samantha	Rh1AG297400 Rh2AG591400 Rh2BG000200 Rh2BG603100 Rh2CG574200 Rh2DG614000 Rh4AG192000 Rh4AG364400 Rh4BG375500 Rh4CG389600 Rh4DG370100 Rh4DG370200 Rh5DG208500 Rh7CG204500
rosa_wichuraiana	Rw0G007250 Rw0G016800 Rw2G049270 Rw4G016330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	291
AciI	CCGC	1 cut(s)	289
AcoI	YGGCCR	1 cut(s)	243
AfiI	CCNNNNNNNGG	1 cut(s)	53
AluBI	AGCT	2 cut(s)	344, 363
AluI	AGCT	2 cut(s)	344, 363
Alw26I	GTCTC	2 cut(s)	151, 506
AoxI	GGCC	2 cut(s)	243, 475
ApeKI	GCWGC	1 cut(s)	89
AspLEI	GCGC	1 cut(s)	53
AspS9I	GGNCC	1 cut(s)	476
AsuHPI	GGTGA	3 cut(s)	26, 56, 290
BbsI	GAAGAC	1 cut(s)	261
BbvI	GCAGC	1 cut(s)	76
BccI	CCATC	1 cut(s)	491
BceAI	ACGGC	1 cut(s)	223
BclI	TGATCA	2 cut(s)	16, 348
BcoDI	GTCTC	2 cut(s)	151, 506
BfoI	RGCGCY	1 cut(s)	54
BisI	GCNGC	2 cut(s)	90, 289
BlsI	GCNGC	2 cut(s)	91, 290
BmgT120I	GGNCC	1 cut(s)	476
BmsI	GCATC	1 cut(s)	220
BpiI	GAAGAC	1 cut(s)	261
BplI	GAGNNNNNCTC	2 cut(s)	157, 189
BsaI	GGTCTC	1 cut(s)	506
BsaWI	WCCGGW	1 cut(s)	11
Bsc4I	CCNNNNNNNGG	1 cut(s)	53
Bse118I	RCCGGY	1 cut(s)	53
BseLI	CCNNNNNNNGG	1 cut(s)	53
BseMII	CTCAG	2 cut(s)	209, 354
BseRI	GAGGAG	3 cut(s)	283, 300, 358
BseXI	GCAGC	1 cut(s)	76
BseYI	CCCAGC	1 cut(s)	47
BshFI	GGCC	2 cut(s)	245, 477
BsiSI	CCGG	2 cut(s)	12, 54
BslI	CCNNNNNNNGG	1 cut(s)	53
BsmAI	GTCTC	2 cut(s)	151, 506
BsmBI	CGTCTC	1 cut(s)	151
BsnI	GGCC	2 cut(s)	245, 477
Bso31I	GGTCTC	1 cut(s)	506
Bsp143I	GATC	3 cut(s)	16, 198, 348
BspACI	CCGC	1 cut(s)	289
BspANI	GGCC	2 cut(s)	245, 477
BspCNI	CTCAG	2 cut(s)	208, 353
BspTNI	GGTCTC	1 cut(s)	506
BsrBI	CCGCTC	1 cut(s)	291
BsrFI	RCCGGY	1 cut(s)	53
BssAI	RCCGGY	1 cut(s)	53
BssMI	GATC	3 cut(s)	16, 198, 348
Bst4CI	ACNGT	2 cut(s)	145, 376
BstC8I	GCNNGC	1 cut(s)	55
BstDEI	CTNAG	2 cut(s)	195, 340
BstEII	GGTNACC	1 cut(s)	62
BstH2I	RGCGCY	1 cut(s)	54
BstHHI	GCGC	1 cut(s)	53
BstKTI	GATC	3 cut(s)	19, 201, 351
BstMAI	GTCTC	2 cut(s)	151, 506
BstMBI	GATC	3 cut(s)	16, 198, 348
BstPI	GGTNACC	1 cut(s)	62
BstV1I	GCAGC	1 cut(s)	76
BstV2I	GAAGAC	1 cut(s)	261
BsuRI	GGCC	2 cut(s)	245, 477
BtsIMutI	CAGTG	1 cut(s)	372
Cac8I	GCNNGC	1 cut(s)	55
CfoI	GCGC	1 cut(s)	53
Cfr10I	RCCGGY	1 cut(s)	53
Cfr13I	GGNCC	1 cut(s)	476
CviAII	CATG	3 cut(s)	32, 58, 469
CviJI	RGCY	5 cut(s)	238, 245, 344, 363, 477
CviKI_1	RGCY	5 cut(s)	238, 245, 344, 363, 477
DdeI	CTNAG	2 cut(s)	195, 340
DpnI	GATC	3 cut(s)	18, 200, 350
DpnII	GATC	3 cut(s)	16, 198, 348
EaeI	YGGCCR	1 cut(s)	243
Eco31I	GGTCTC	1 cut(s)	506
Eco91I	GGTNACC	1 cut(s)	62
EcoO65I	GGTNACC	1 cut(s)	62
Esp3I	CGTCTC	1 cut(s)	151
FaeI	CATG	3 cut(s)	35, 61, 472
FaiI	YATR	6 cut(s)	33, 59, 347, 359, 453, 470
FatI	CATG	3 cut(s)	31, 57, 468
FbaI	TGATCA	2 cut(s)	16, 348
Fnu4HI	GCNGC	2 cut(s)	90, 289
Fsp4HI	GCNGC	2 cut(s)	90, 289
GlaI	GCGC	1 cut(s)	52
GluI	GCNGC	2 cut(s)	90, 289
GsaI	CCCAGC	1 cut(s)	51
HaeII	RGCGCY	1 cut(s)	54
HaeIII	GGCC	2 cut(s)	245, 477
HapII	CCGG	2 cut(s)	12, 54
HhaI	GCGC	1 cut(s)	53
Hin1II	CATG	3 cut(s)	35, 61, 472
Hin6I	GCGC	1 cut(s)	51
HinP1I	GCGC	1 cut(s)	51
HincII	GTYRAC	1 cut(s)	444
HindII	GTYRAC	1 cut(s)	444
HinfI	GANTC	5 cut(s)	8, 84, 158, 283, 392
HpaII	CCGG	2 cut(s)	12, 54
HphI	GGTGA	3 cut(s)	26, 56, 290
Hpy166II	GTNNAC	2 cut(s)	183, 444
Hpy188I	TCNGA	3 cut(s)	7, 198, 253
Hpy188III	TCNNGA	1 cut(s)	503
Hpy8I	GTNNAC	2 cut(s)	183, 444
Hpy99I	CGWCG	1 cut(s)	244
HpyAV	CCTTC	6 cut(s)	53, 85, 89, 199, 233, 469
HpyCH4III	ACNGT	2 cut(s)	145, 376
HpyCH4V	TGCA	1 cut(s)	155
HpyF3I	CTNAG	2 cut(s)	195, 340
Hsp92II	CATG	3 cut(s)	35, 61, 472
HspAI	GCGC	1 cut(s)	51
KroI	GCCGGC	1 cut(s)	53
KroNI	GCCGGC	1 cut(s)	55
Ksp22I	TGATCA	2 cut(s)	16, 348
Kzo9I	GATC	3 cut(s)	16, 198, 348
LmnI	GCTCC	1 cut(s)	296
LpnPI	CCDG	3 cut(s)	25, 61, 67
Lsp1109I	GCAGC	1 cut(s)	76
LweI	GCATC	1 cut(s)	220
MaeIII	GTNAC	2 cut(s)	62, 118
MalI	GATC	3 cut(s)	18, 200, 350
MbiI	CCGCTC	1 cut(s)	291
MboI	GATC	3 cut(s)	16, 198, 348
MboII	GAAGA	4 cut(s)	206, 266, 312, 412
MfeI	CAATTG	1 cut(s)	176
MluCI	AATT	3 cut(s)	135, 176, 247
MlyI	GAGTC	2 cut(s)	78, 167
MmeI	TCCRAC	1 cut(s)	164
MnlI	CCTC	7 cut(s)	77, 204, 304, 318, 321, 345, 379
MroNI	GCCGGC	1 cut(s)	53
MslI	CAYNNNNRTG	1 cut(s)	356
MspI	CCGG	2 cut(s)	12, 54
MunI	CAATTG	1 cut(s)	176
NaeI	GCCGGC	1 cut(s)	55
NdeII	GATC	3 cut(s)	16, 198, 348
NgoMIV	GCCGGC	1 cut(s)	53
NlaIII	CATG	3 cut(s)	35, 61, 472
NmeAIII	GCCGAG	1 cut(s)	453
NmuCI	GTSAC	2 cut(s)	62, 118
PdiI	GCCGGC	1 cut(s)	55
PfeI	GAWTC	3 cut(s)	8, 283, 392
PkrI	GCNGC	2 cut(s)	91, 290
PleI	GAGTC	2 cut(s)	78, 166
PpsI	GAGTC	2 cut(s)	78, 166
PspEI	GGTNACC	1 cut(s)	62
PspFI	CCCAGC	1 cut(s)	47
PspPI	GGNCC	1 cut(s)	476
RseI	CAYNNNNRTG	1 cut(s)	356
SatI	GCNGC	2 cut(s)	90, 289
Sau3AI	GATC	3 cut(s)	16, 198, 348
Sau96I	GGNCC	1 cut(s)	476
SchI	GAGTC	2 cut(s)	78, 167
SetI	ASST	6 cut(s)	69, 191, 303, 337, 346, 365
SfaNI	GCATC	1 cut(s)	220
SmiMI	CAYNNNNRTG	1 cut(s)	356
Sse9I	AATT	3 cut(s)	135, 176, 247
SsiI	CCGC	1 cut(s)	289
TaaI	ACNGT	2 cut(s)	145, 376
TaqI	TCGA	2 cut(s)	82, 504
TasI	AATT	3 cut(s)	135, 176, 247
TauI	GCSGC	1 cut(s)	291
TfiI	GAWTC	3 cut(s)	8, 283, 392
TscAI	CASTG	1 cut(s)	379
TseFI	GTSAC	2 cut(s)	62, 118
TseI	GCWGC	1 cut(s)	89
Tsp45I	GTSAC	2 cut(s)	62, 118
TspDTI	ATGAA	3 cut(s)	20, 115, 206
TspRI	CASTG	1 cut(s)	379
XcmI	CCANNNNNNNNNTGG	1 cut(s)	55

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.