Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009639.1

Orthogroup ID

OG0001611

Physical Location & Seq

Genomic Coordinates Reverse (-)

69033 .. 73884

Gene Structure 4852 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009639.1_g000019.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

atgttgtatgcaactctgattttcattttacggttgcggcatcgcggtcctgattggagcgggttgcattgccatggggattgttaccttgcttatcagagattggttattgtggaccctgcctcaggggatcagccactccacaacgaggacaataccgtcattgtcacggcgtgtcagcaccgcggggtgcagtcgtcgggggagtcccttgacctgacttcttcttcaagcgctgtggacgaggagagcaccaacctcgccacagggttcttctctagcctttcgggaaatgacttttgccttacagataaggactttaggtgtgatatcttcgcttcgctgggttgcgagagcgttacccttgcttcgctggtagtatctgtggcagtagcactgacagtcagctcggagagactaggactgagagtacggtctccgggtttcaacagggttgaaggtttgctcctgggaggctttgtaatgctgggattgattgattcgagagaggtctttaactttgccgcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004066 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0006082 GO:0006520 GO:0006528 GO:0006529 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009066 GO:0009067 GO:0009314 GO:0009416 GO:0009506 GO:0009628 GO:0009642 GO:0009646 GO:0009651 GO:0009987 GO:0016053 GO:0016874 GO:0016879 GO:0016884 GO:0019752 GO:0030054 GO:0032787 GO:0034641 GO:0042538 GO:0042802 GO:0042803 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046983 GO:0050896 GO:0055044 GO:0071704 GO:0072330 GO:0097164 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00250 ko01100 ko01110 map00250 map01100 map01110

Pfam Domains

Protein Families

Asn_synthase GATase_7

Protein Analysis

176

Amino Acids

19.01

Weight (kDa)

4.93

Isoelectric Point (pI)

40.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001611)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g47620
malus_domestica	MD16G1064500.v1.1 MD16G1276100.v1.1 MD17G1055500.v1.1
prunus_persica	Prupe.1G282300_v2.0.a1 Prupe.3G260200_v2.0.a1
pyrus_communis	pycom16g05630 pycom16g05640 pycom17g05420
rosa_chinensis	RchiOBHm_Chr2g0166721 RchiOBHm_Chr4g0438831 RchiOBHm_Chr4g0438841
rosa_laevigata	RLG00000006326 RLG00000006327 RLG00000021642
rosa_multiflora	Rmu_co8237817.1_g000001 Rmu_sc0000431.1_g000011 Rmu_sc0002181.1_g000012 Rmu_sc0002505.1_g000018 Rmu_sc0002505.1_g000020 Rmu_sc0003748.1_g000012 Rmu_sc0005433.1_g000002 Rmu_sc0007415.1_g000054 Rmu_sc0009639.1_g000019 Rmu_sc0023543.1_g000001 Rmu_sc0041865.1_g000001
rosa_roxburghii	Rroxscaffold_2G00084290 Rroxscaffold_2G00084610 Rroxscaffold_5G00379870
rosa_rugosa	Rorug02G0525100 Rorug04G0313400 Rorug04G0313400
rosa_samantha	Rh1AG297400 Rh2AG591400 Rh2BG000200 Rh2BG603100 Rh2CG574200 Rh2DG614000 Rh4AG192000 Rh4AG364400 Rh4BG375500 Rh4CG389600 Rh4DG370100 Rh4DG370200 Rh5DG208500 Rh7CG204500
rosa_wichuraiana	Rw0G007250 Rw0G016800 Rw2G049270 Rw4G016330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	158
AccBSI	CCGCTC	1 cut(s)	60
AccII	CGCG	2 cut(s)	45, 186
AciI	CCGC	6 cut(s)	37, 45, 60, 184, 186, 525
AclWI	GGATC	1 cut(s)	138
AdeI	CACNNNGTG	1 cut(s)	174
AfaI	GTAC	1 cut(s)	432
AfeI	AGCGCT	1 cut(s)	235
AfiI	CCNNNNNNNGG	2 cut(s)	125, 148
AgsI	TTSAA	3 cut(s)	231, 448, 458
AjnI	CCWGG	1 cut(s)	468
AluBI	AGCT	1 cut(s)	408
AluI	AGCT	1 cut(s)	408
Alw21I	GWGCWC	1 cut(s)	254
Alw26I	GTCTC	2 cut(s)	409, 441
AlwI	GGATC	1 cut(s)	138
Aor51HI	AGCGCT	1 cut(s)	235
AspLEI	GCGC	1 cut(s)	236
AspS9I	GGNCC	2 cut(s)	47, 115
AsuC2I	CCSGG	1 cut(s)	441
AvaII	GGWCC	2 cut(s)	47, 115
AxyI	CCTNAGG	1 cut(s)	124
Bbv12I	GWGCWC	1 cut(s)	254
BceAI	ACGGC	1 cut(s)	186
BcgI	CGANNNNNNTGC	2 cut(s)	241, 275
BciT130I	CCWGG	1 cut(s)	470
BcnI	CCSGG	1 cut(s)	441
BcoDI	GTCTC	2 cut(s)	409, 441
BfaI	CTAG	2 cut(s)	279, 419
BfoI	RGCGCY	1 cut(s)	237
BisI	GCNGC	2 cut(s)	38, 525
BlsI	GCNGC	2 cut(s)	39, 526
Bme1390I	CCNGG	2 cut(s)	441, 470
Bme18I	GGWCC	2 cut(s)	47, 115
BmgT120I	GGNCC	2 cut(s)	47, 115
BmiI	GGNNCC	1 cut(s)	117
BmrFI	CCNGG	2 cut(s)	441, 470
BmsI	GCATC	1 cut(s)	49
BpuMI	CCSGG	1 cut(s)	441
BsaI	GGTCTC	1 cut(s)	441
BsaJI	CCNNGG	3 cut(s)	73, 184, 469
BsaXI	ACNNNNNCTCC	2 cut(s)	465, 495
Bsc4I	CCNNNNNNNGG	2 cut(s)	125, 148
Bse21I	CCTNAGG	1 cut(s)	124
Bse3DI	GCAATG	1 cut(s)	67
BseBI	CCWGG	1 cut(s)	470
BseDI	CCNNGG	3 cut(s)	73, 184, 469
BseLI	CCNNNNNNNGG	2 cut(s)	125, 148
BseMI	GCAATG	1 cut(s)	67
BseMII	CTCAG	2 cut(s)	138, 416
BseRI	GAGGAG	1 cut(s)	260
BseYI	CCCAGC	2 cut(s)	343, 487
BsgI	GTGCAG	1 cut(s)	212
Bsh1236I	CGCG	2 cut(s)	45, 186
BsiHKAI	GWGCWC	1 cut(s)	254
BsiSI	CCGG	1 cut(s)	440
BslFI	GGGAC	1 cut(s)	193
BslI	CCNNNNNNNGG	2 cut(s)	125, 148
BsmAI	GTCTC	2 cut(s)	409, 441
BsmFI	GGGAC	1 cut(s)	193
Bso31I	GGTCTC	1 cut(s)	441
Bsp1286I	GDGCHC	1 cut(s)	254
Bsp143I	GATC	1 cut(s)	130
Bsp19I	CCATGG	1 cut(s)	73
BspACI	CCGC	6 cut(s)	37, 45, 60, 184, 186, 525
BspCNI	CTCAG	2 cut(s)	137, 417
BspFNI	CGCG	2 cut(s)	45, 186
BspLI	GGNNCC	1 cut(s)	117
BspPI	GGATC	1 cut(s)	138
BspTNI	GGTCTC	1 cut(s)	441
BsrBI	CCGCTC	1 cut(s)	60
BsrDI	GCAATG	1 cut(s)	67
BssECI	CCNNGG	3 cut(s)	73, 184, 469
BssMI	GATC	1 cut(s)	130
BssT1I	CCWWGG	1 cut(s)	73
Bst2UI	CCWGG	1 cut(s)	470
Bst4CI	ACNGT	4 cut(s)	33, 160, 403, 435
BstDEI	CTNAG	2 cut(s)	124, 425
BstDSI	CCRYGG	2 cut(s)	73, 184
BstENI	CCTNNNNNAGG	1 cut(s)	123
BstFNI	CGCG	2 cut(s)	45, 186
BstH2I	RGCGCY	1 cut(s)	237
BstHHI	GCGC	1 cut(s)	236
BstKTI	GATC	1 cut(s)	133
BstMAI	GTCTC	2 cut(s)	409, 441
BstMBI	GATC	1 cut(s)	130
BstNI	CCWGG	1 cut(s)	470
BstSCI	CCNGG	2 cut(s)	439, 468
BstUI	CGCG	2 cut(s)	45, 186
Bsu36I	CCTNAGG	1 cut(s)	124
BtgI	CCRYGG	2 cut(s)	73, 184
BtgZI	GCGATG	1 cut(s)	26
BtsIMutI	CAGTG	1 cut(s)	395
CfoI	GCGC	1 cut(s)	236
Cfr13I	GGNCC	2 cut(s)	47, 115
Cfr42I	CCGCGG	1 cut(s)	187
Csp6I	GTAC	1 cut(s)	431
CspCI	CAANNNNNGTGG	2 cut(s)	219, 254
CviAII	CATG	1 cut(s)	74
CviJI	RGCY	4 cut(s)	136, 282, 408, 477
CviKI_1	RGCY	4 cut(s)	136, 282, 408, 477
CviQI	GTAC	1 cut(s)	431
DdeI	CTNAG	2 cut(s)	124, 425
DpnI	GATC	1 cut(s)	132
DpnII	GATC	1 cut(s)	130
DraIII	CACNNNGTG	1 cut(s)	174
DrdI	GACNNNNNNGTC	1 cut(s)	158
DseDI	GACNNNNNNGTC	1 cut(s)	158
Eco130I	CCWWGG	1 cut(s)	73
Eco31I	GGTCTC	1 cut(s)	441
Eco32I	GATATC	1 cut(s)	331
Eco47I	GGWCC	2 cut(s)	47, 115
Eco47III	AGCGCT	1 cut(s)	235
Eco81I	CCTNAGG	1 cut(s)	124
EcoNI	CCTNNNNNAGG	1 cut(s)	123
EcoRII	CCWGG	1 cut(s)	468
EcoRV	GATATC	1 cut(s)	331
EcoT14I	CCWWGG	1 cut(s)	73
ErhI	CCWWGG	1 cut(s)	73
FaeI	CATG	1 cut(s)	77
FaiI	YATR	2 cut(s)	9, 75
FaqI	GGGAC	1 cut(s)	193
FatI	CATG	1 cut(s)	73
FauI	CCCGC	2 cut(s)	53, 179
Fnu4HI	GCNGC	2 cut(s)	38, 525
Fsp4HI	GCNGC	2 cut(s)	38, 525
FspBI	CTAG	2 cut(s)	279, 419
GlaI	GCGC	1 cut(s)	235
GluI	GCNGC	2 cut(s)	38, 525
GsaI	CCCAGC	2 cut(s)	347, 491
HaeII	RGCGCY	1 cut(s)	237
HapII	CCGG	1 cut(s)	440
HhaI	GCGC	1 cut(s)	236
Hin1II	CATG	1 cut(s)	77
Hin6I	GCGC	1 cut(s)	234
HinP1I	GCGC	1 cut(s)	234
HinfI	GANTC	2 cut(s)	206, 500
HpaII	CCGG	1 cut(s)	440
Hpy166II	GTNNAC	2 cut(s)	115, 241
Hpy188I	TCNGA	3 cut(s)	18, 99, 412
Hpy188III	TCNNGA	3 cut(s)	50, 288, 504
Hpy8I	GTNNAC	2 cut(s)	115, 241
Hpy99I	CGWCG	1 cut(s)	202
HpyAV	CCTTC	1 cut(s)	452
HpyCH4III	ACNGT	4 cut(s)	33, 160, 403, 435
HpyCH4V	TGCA	3 cut(s)	11, 67, 193
HpyF3I	CTNAG	2 cut(s)	124, 425
Hsp92II	CATG	1 cut(s)	77
HspAI	GCGC	1 cut(s)	234
KspI	CCGCGG	1 cut(s)	187
Kzo9I	GATC	1 cut(s)	130
LmnI	GCTCC	2 cut(s)	57, 471
LweI	GCATC	1 cut(s)	49
MaeI	CTAG	2 cut(s)	279, 419
MaeIII	GTNAC	3 cut(s)	83, 166, 358
MalI	GATC	1 cut(s)	132
MbiI	CCGCTC	1 cut(s)	60
MboI	GATC	1 cut(s)	130
MboII	GAAGA	4 cut(s)	216, 219, 265, 325
MhlI	GDGCHC	1 cut(s)	254
MlyI	GAGTC	1 cut(s)	215
MnlI	CCTC	6 cut(s)	133, 142, 238, 269, 467, 502
MseI	TTAA	2 cut(s)	516, 529
MslI	CAYNNNNRTG	1 cut(s)	72
MspA1I	CMGCKG	1 cut(s)	186
MspI	CCGG	1 cut(s)	440
MspR9I	CCNGG	2 cut(s)	441, 470
MvaI	CCWGG	1 cut(s)	470
MvnI	CGCG	2 cut(s)	45, 186
NciI	CCSGG	1 cut(s)	441
NcoI	CCATGG	1 cut(s)	73
NdeII	GATC	1 cut(s)	130
NlaIII	CATG	1 cut(s)	77
NlaIV	GGNNCC	1 cut(s)	117
NmuCI	GTSAC	1 cut(s)	166
PfeI	GAWTC	1 cut(s)	500
PkrI	GCNGC	2 cut(s)	39, 526
PleI	GAGTC	1 cut(s)	214
PpsI	GAGTC	1 cut(s)	214
Psp6I	CCWGG	1 cut(s)	468
PspFI	CCCAGC	2 cut(s)	343, 487
PspGI	CCWGG	1 cut(s)	468
PspN4I	GGNNCC	1 cut(s)	117
PspPI	GGNCC	2 cut(s)	47, 115
RsaI	GTAC	1 cut(s)	432
RsaNI	GTAC	1 cut(s)	431
RseI	CAYNNNNRTG	1 cut(s)	72
SacII	CCGCGG	1 cut(s)	187
SaqAI	TTAA	2 cut(s)	516, 529
SatI	GCNGC	2 cut(s)	38, 525
Sau3AI	GATC	1 cut(s)	130
Sau96I	GGNCC	2 cut(s)	47, 115
SchI	GAGTC	1 cut(s)	215
ScrFI	CCNGG	2 cut(s)	441, 470
SduI	GDGCHC	1 cut(s)	254
SetI	ASST	7 cut(s)	90, 219, 261, 326, 410, 463, 513
SfaNI	GCATC	1 cut(s)	49
Sfr303I	CCGCGG	1 cut(s)	187
SgrBI	CCGCGG	1 cut(s)	187
SinI	GGWCC	2 cut(s)	47, 115
SmiMI	CAYNNNNRTG	1 cut(s)	72
SsiI	CCGC	6 cut(s)	37, 45, 60, 184, 186, 525
SspMI	CTAG	2 cut(s)	279, 419
StyD4I	CCNGG	2 cut(s)	439, 468
StyI	CCWWGG	1 cut(s)	73
TaaI	ACNGT	4 cut(s)	33, 160, 403, 435
TaqI	TCGA	1 cut(s)	503
TauI	GCSGC	2 cut(s)	40, 527
TfiI	GAWTC	1 cut(s)	500
Tru1I	TTAA	2 cut(s)	516, 529
Tru9I	TTAA	2 cut(s)	516, 529
TscAI	CASTG	1 cut(s)	402
TseFI	GTSAC	1 cut(s)	166
Tsp45I	GTSAC	1 cut(s)	166
TspDTI	ATGAA	1 cut(s)	13
TspRI	CASTG	1 cut(s)	402
VpaK11BI	GGWCC	2 cut(s)	47, 115
XagI	CCTNNNNNAGG	1 cut(s)	123
XspI	CTAG	2 cut(s)	279, 419

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.