Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0001611

Physical Location & Seq

Genomic Coordinates Forward (+)

24650369 .. 24651770

Gene Structure 1402 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G260200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1389 bp

ATGTCGGATTCCGGTGATCTACAAGTCACTCATGTAGCTCTCCTTCCAAGCGCCGGCATGGGCCATCTCACGCCCTTCCTTCGACTTGCTGCTTTACTCACGGCACACAATGTCCATGTCACCTTCATCACTCCTAGTCCAACCGTCTCACTTGCAGAATCACTGAGCTTGTCTCACTTATTCACTACCTTTCCACAAATTACTCAAAAGCATCTTCATCTCCTTCCACTTGATCAGCCCTCTGCCAATTCAGAAGACCCTTTTTACTACCATTTCGAACTAATTCGCCGTTCTTCTCACCTACTCCCCCCTCTTCTATCTTCGCTCTGTCCACCTCTCTCTGCTATAATCACAGACATGAGCTTGACCTCCACAGTTAACCCTTTAACTGATTCTCTTGGACTTCCTAACTACATTTTCTTCACATCATCTGCCAAAATGTTGACATTTTATGTATCCTTTCACACTATGCTTGGTCCAAATCATGAGATAGAAGACCACACAAAAGTTTCAGGTTTAGAACAAATACCAAAAGCATGGATTCCTCCACCACTTCTACGGGGCGGTAATAATCTTCTGAAGACCTTTTTCTTAGAGAATGGTAAGAAGATGACAGAATCAAGTGGAATTTTGGTAAACACATATGAAAGTATAGAACGTGAGACTCTGGCAGCACTAAATGAGGGCAAAGTATTGAGAAAGCTACCATCAGTGATTGCCATTGGGCCACTTGCACCATGTATCTTTGAGGAAAGTCAACAACTGGCATGGCTTGATGATCAACCAACTGGGTCAGTTCTCTATGTTAGCTTTGGAAGTAGGACTGCCATGTCAAGGGACCAAATCAGAGAGTTGGGTGATGGCTTGGTGAGGAGTGGTTGTAGGTTTCTGTGGGTTGTTAAGGATAAGAAAGTTGACGTGGAAGACGACAAGAAGCTGATTGAGGTGCTTGGACAGGGATTACTGGAAAGGGTTAAGAAAAATGGATTTGCAGTGAAGAACTGGCTCAACCAACAGGAGATATTGAGCCATCCAGCAATTGGTGGGTTTTTAAGCCACTGTGGCTGGAACTCCTTGACTGAGGCTCTCTGGAATGGTGTGCGAATATTAGCATGGCCGCAACATGGGGACCAGAAAATCAATGCAGATTTGGTGGAGAGAATTGGACTGGGAACGTGGGATAAGAGTTGGGGTTGGGGTGAGGGGGAGATGTTGGTGAAAGCACAGGACATTGCAGAGAGGGTTAGAGAGATAATGGGAAACAAGTTGCTGAGATTGCAAACTGACCACATTAGAGAAGAGGCCAGAATGGCTGTTGGAGATGGTGGTAGTTCTACAAAGAGACTTTATGCTCTCATCAAGATATGGAAGAGGGTTCAGGTAGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0047243 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

463

Amino Acids

51.43

Weight (kDa)

6.6

Isoelectric Point (pI)

48.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001611)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g47620
malus_domestica	MD16G1064500.v1.1 MD16G1276100.v1.1 MD17G1055500.v1.1
prunus_persica	Prupe.1G282300_v2.0.a1 Prupe.3G260200_v2.0.a1
pyrus_communis	pycom16g05630 pycom16g05640 pycom17g05420
rosa_chinensis	RchiOBHm_Chr2g0166721 RchiOBHm_Chr4g0438831 RchiOBHm_Chr4g0438841
rosa_laevigata	RLG00000006326 RLG00000006327 RLG00000021642
rosa_multiflora	Rmu_co8237817.1_g000001 Rmu_sc0000431.1_g000011 Rmu_sc0002181.1_g000012 Rmu_sc0002505.1_g000018 Rmu_sc0002505.1_g000020 Rmu_sc0003748.1_g000012 Rmu_sc0005433.1_g000002 Rmu_sc0007415.1_g000054 Rmu_sc0009639.1_g000019 Rmu_sc0023543.1_g000001 Rmu_sc0041865.1_g000001
rosa_roxburghii	Rroxscaffold_2G00084290 Rroxscaffold_2G00084610 Rroxscaffold_5G00379870
rosa_rugosa	Rorug02G0525100 Rorug04G0313400 Rorug04G0313400
rosa_samantha	Rh1AG297400 Rh2AG591400 Rh2BG000200 Rh2BG603100 Rh2CG574200 Rh2DG614000 Rh4AG192000 Rh4AG364400 Rh4BG375500 Rh4CG389600 Rh4DG370100 Rh4DG370200 Rh5DG208500 Rh7CG204500
rosa_wichuraiana	Rw0G007250 Rw0G016800 Rw2G049270 Rw4G016330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	829
AccB7I	CCANNNNNTGG	1 cut(s)	1040
AciI	CCGC	2 cut(s)	564, 1118
AcoI	YGGCCR	1 cut(s)	1115
AcsI	RAATTY	1 cut(s)	627
AcuI	CTGAAG	1 cut(s)	599
AfiI	CCNNNNNNNGG	4 cut(s)	53, 834, 1040, 1124
AjiI	CACGTC	1 cut(s)	919
AluBI	AGCT	6 cut(s)	38, 168, 363, 703, 810, 937
AluI	AGCT	6 cut(s)	38, 168, 363, 703, 810, 937
Alw26I	GTCTC	4 cut(s)	151, 177, 656, 1336
AoxI	GGCC	4 cut(s)	61, 725, 1115, 1302
ApeKI	GCWGC	2 cut(s)	89, 671
ApoI	RAATTY	1 cut(s)	627
Asp700I	GAANNNNTTC	1 cut(s)	282
AspLEI	GCGC	1 cut(s)	53
AspS9I	GGNCC	5 cut(s)	61, 476, 725, 838, 1129
AsuHPI	GGTGA	7 cut(s)	26, 112, 290, 869, 880, 1211, 1228
AsuII	TTCGAA	1 cut(s)	276
AvaII	GGWCC	3 cut(s)	476, 838, 1129
BarI	GAAGNNNNNNTAC	2 cut(s)	27, 59
BbsI	GAAGAC	4 cut(s)	261, 501, 587, 930
BbvI	GCAGC	2 cut(s)	76, 683
BccI	CCATC	5 cut(s)	72, 715, 854, 1038, 1316
BceAI	ACGGC	2 cut(s)	117, 273
BciVI	GTATCC	1 cut(s)	466
BclI	TGATCA	2 cut(s)	232, 778
BcoDI	GTCTC	4 cut(s)	151, 177, 656, 1336
BfaI	CTAG	1 cut(s)	135
BfoI	RGCGCY	1 cut(s)	54
BfuI	GTATCC	1 cut(s)	466
BglI	GCCNNNNNGGC	2 cut(s)	1062, 1310
BisI	GCNGC	3 cut(s)	90, 672, 1118
BlsI	GCNGC	3 cut(s)	91, 673, 1119
Bme18I	GGWCC	3 cut(s)	476, 838, 1129
BmgBI	CACGTC	1 cut(s)	919
BmgT120I	GGNCC	5 cut(s)	61, 476, 725, 838, 1129
BmiI	GGNNCC	2 cut(s)	839, 1130
BmrI	ACTGGG	2 cut(s)	798, 1178
BmsI	GCATC	1 cut(s)	220
BmuI	ACTGGG	2 cut(s)	798, 1178
BpiI	GAAGAC	4 cut(s)	261, 501, 587, 930
BplI	GAGNNNNNCTC	2 cut(s)	157, 189
Bpu14I	TTCGAA	1 cut(s)	276
BsaWI	WCCGGW	1 cut(s)	11
BsaXI	ACNNNNNCTCC	2 cut(s)	865, 895
Bsc4I	CCNNNNNNNGG	4 cut(s)	53, 834, 1040, 1124
Bse118I	RCCGGY	1 cut(s)	53
Bse1I	ACTGG	5 cut(s)	768, 793, 969, 1007, 1173
Bse3DI	GCAATG	1 cut(s)	1230
BseGI	GGATG	1 cut(s)	1030
BseLI	CCNNNNNNNGG	4 cut(s)	53, 834, 1040, 1124
BseMI	GCAATG	1 cut(s)	1230
BseMII	CTCAG	3 cut(s)	155, 1071, 1262
BseNI	ACTGG	5 cut(s)	768, 793, 969, 1007, 1173
BseRI	GAGGAG	1 cut(s)	886
BseXI	GCAGC	2 cut(s)	76, 683
BshFI	GGCC	4 cut(s)	63, 727, 1117, 1304
BsiSI	CCGG	2 cut(s)	12, 54
BslFI	GGGAC	2 cut(s)	851, 1142
BslI	CCNNNNNNNGG	4 cut(s)	53, 834, 1040, 1124
BsmAI	GTCTC	4 cut(s)	151, 177, 656, 1336
BsmBI	CGTCTC	1 cut(s)	151
BsmFI	GGGAC	2 cut(s)	851, 1142
BsnI	GGCC	4 cut(s)	63, 727, 1117, 1304
Bsp119I	TTCGAA	1 cut(s)	276
Bsp143I	GATC	3 cut(s)	16, 232, 778
BspACI	CCGC	2 cut(s)	564, 1118
BspANI	GGCC	4 cut(s)	63, 727, 1117, 1304
BspCNI	CTCAG	3 cut(s)	156, 1072, 1263
BspHI	TCATGA	1 cut(s)	484
BspLI	GGNNCC	2 cut(s)	839, 1130
BspT104I	TTCGAA	1 cut(s)	276
BsrDI	GCAATG	1 cut(s)	1230
BsrFI	RCCGGY	1 cut(s)	53
BsrI	ACTGG	5 cut(s)	768, 793, 969, 1007, 1173
BssAI	RCCGGY	1 cut(s)	53
BssMI	GATC	3 cut(s)	16, 232, 778
Bst4CI	ACNGT	3 cut(s)	145, 376, 1061
Bst6I	CTCTTC	3 cut(s)	318, 1293, 1364
BstBI	TTCGAA	1 cut(s)	276
BstC8I	GCNNGC	1 cut(s)	55
BstDEI	CTNAG	4 cut(s)	164, 592, 1080, 1271
BstF5I	GGATG	1 cut(s)	1030
BstH2I	RGCGCY	1 cut(s)	54
BstHHI	GCGC	1 cut(s)	53
BstKTI	GATC	3 cut(s)	19, 235, 781
BstMAI	GTCTC	4 cut(s)	151, 177, 656, 1336
BstMBI	GATC	3 cut(s)	16, 232, 778
BstMWI	GCNNNNNNNGC	3 cut(s)	1062, 1276, 1310
BstV1I	GCAGC	2 cut(s)	76, 683
BstV2I	GAAGAC	4 cut(s)	261, 501, 587, 930
BstXI	CCANNNNNNTGG	1 cut(s)	537
BsuI	GTATCC	1 cut(s)	466
BsuRI	GGCC	4 cut(s)	63, 727, 1117, 1304
BtrI	CACGTC	1 cut(s)	919
BtsCI	GGATG	1 cut(s)	1030
BtsI	GCAGTG	1 cut(s)	999
BtsIMutI	CAGTG	4 cut(s)	161, 717, 999, 1057
Cac8I	GCNNGC	1 cut(s)	55
CciI	TCATGA	1 cut(s)	484
CfoI	GCGC	1 cut(s)	53
Cfr10I	RCCGGY	1 cut(s)	53
Cfr13I	GGNCC	5 cut(s)	61, 476, 725, 838, 1129
DdeI	CTNAG	4 cut(s)	164, 592, 1080, 1271
DpnI	GATC	3 cut(s)	18, 234, 780
DpnII	GATC	3 cut(s)	16, 232, 778
DrdI	GACNNNNNNGTC	1 cut(s)	829
DseDI	GACNNNNNNGTC	1 cut(s)	829
EaeI	YGGCCR	1 cut(s)	1115
Eam1104I	CTCTTC	3 cut(s)	318, 1293, 1364
EarI	CTCTTC	3 cut(s)	318, 1293, 1364
Eco47I	GGWCC	3 cut(s)	476, 838, 1129
Eco57I	CTGAAG	1 cut(s)	599
Esp3I	CGTCTC	1 cut(s)	151
FaqI	GGGAC	2 cut(s)	851, 1142
FauNDI	CATATG	1 cut(s)	643
FbaI	TGATCA	2 cut(s)	232, 778
Fnu4HI	GCNGC	3 cut(s)	90, 672, 1118
FokI	GGATG	1 cut(s)	1017
Fsp4HI	GCNGC	3 cut(s)	90, 672, 1118
FspBI	CTAG	1 cut(s)	135
GlaI	GCGC	1 cut(s)	52
GluI	GCNGC	3 cut(s)	90, 672, 1118
HaeII	RGCGCY	1 cut(s)	54
HaeIII	GGCC	4 cut(s)	63, 727, 1117, 1304
HapII	CCGG	2 cut(s)	12, 54
HhaI	GCGC	1 cut(s)	53
Hin6I	GCGC	1 cut(s)	51
HinP1I	GCGC	1 cut(s)	51
HincII	GTYRAC	4 cut(s)	379, 444, 758, 916
HindII	GTYRAC	4 cut(s)	379, 444, 758, 916
HinfI	GANTC	6 cut(s)	8, 158, 392, 541, 617, 664
HpaI	GTTAAC	1 cut(s)	379
HpaII	CCGG	2 cut(s)	12, 54
HphI	GGTGA	7 cut(s)	26, 112, 290, 869, 880, 1211, 1228
Hpy166II	GTNNAC	6 cut(s)	332, 379, 444, 637, 758, 916
Hpy188I	TCNGA	4 cut(s)	7, 253, 579, 848
Hpy188III	TCNNGA	3 cut(s)	485, 1090, 1360
Hpy8I	GTNNAC	6 cut(s)	332, 379, 444, 637, 758, 916
HpyAV	CCTTC	5 cut(s)	53, 85, 89, 133, 233
HpyCH4III	ACNGT	3 cut(s)	145, 376, 1061
HpyCH4IV	ACGT	3 cut(s)	658, 918, 1175
HpyCH4V	TGCA	6 cut(s)	155, 734, 992, 1145, 1235, 1279
HpyF10VI	GCNNNNNNNGC	3 cut(s)	1062, 1276, 1310
HpyF3I	CTNAG	4 cut(s)	164, 592, 1080, 1271
HpySE526I	ACGT	3 cut(s)	658, 918, 1175
HspAI	GCGC	1 cut(s)	51
KroI	GCCGGC	1 cut(s)	53
KroNI	GCCGGC	1 cut(s)	55
Ksp22I	TGATCA	2 cut(s)	232, 778
KspAI	GTTAAC	1 cut(s)	379
Kzo9I	GATC	3 cut(s)	16, 232, 778
Lsp1109I	GCAGC	2 cut(s)	76, 683
LweI	GCATC	1 cut(s)	220
MaeI	CTAG	1 cut(s)	135
MaeII	ACGT	3 cut(s)	658, 918, 1175
MaeIII	GTNAC	2 cut(s)	25, 118
MalI	GATC	3 cut(s)	18, 234, 780
MboI	GATC	3 cut(s)	16, 232, 778
MfeI	CAATTG	1 cut(s)	1038
MluCI	AATT	6 cut(s)	198, 247, 282, 627, 1038, 1161
MlyI	GAGTC	1 cut(s)	658
MmeI	TCCRAC	2 cut(s)	164, 1297
MroNI	GCCGGC	1 cut(s)	53
MroXI	GAANNNNTTC	1 cut(s)	282
MseI	TTAA	5 cut(s)	378, 386, 900, 975, 1052
MslI	CAYNNNNRTG	1 cut(s)	356
MspI	CCGG	2 cut(s)	12, 54
MunI	CAATTG	1 cut(s)	1038
MwoI	GCNNNNNNNGC	3 cut(s)	1062, 1276, 1310
NaeI	GCCGGC	1 cut(s)	55
NdeI	CATATG	1 cut(s)	643
NdeII	GATC	3 cut(s)	16, 232, 778
NgoMIV	GCCGGC	1 cut(s)	53
NlaIV	GGNNCC	2 cut(s)	839, 1130
NmuCI	GTSAC	2 cut(s)	25, 118
NspV	TTCGAA	1 cut(s)	276
PagI	TCATGA	1 cut(s)	484
PcsI	WCGNNNNNNNCGW	1 cut(s)	924
PdiI	GCCGGC	1 cut(s)	55
PdmI	GAANNNNTTC	1 cut(s)	282
PfeI	GAWTC	5 cut(s)	8, 158, 392, 541, 617
PflMI	CCANNNNNTGG	1 cut(s)	1040
PkrI	GCNGC	3 cut(s)	91, 673, 1119
PleI	GAGTC	1 cut(s)	658
PpsI	GAGTC	1 cut(s)	658
PspN4I	GGNNCC	2 cut(s)	839, 1130
PspPI	GGNCC	5 cut(s)	61, 476, 725, 838, 1129
RseI	CAYNNNNRTG	1 cut(s)	356
SaqAI	TTAA	5 cut(s)	378, 386, 900, 975, 1052
SatI	GCNGC	3 cut(s)	90, 672, 1118
Sau3AI	GATC	3 cut(s)	16, 232, 778
Sau96I	GGNCC	5 cut(s)	61, 476, 725, 838, 1129
SchI	GAGTC	1 cut(s)	658
SfaNI	GCATC	1 cut(s)	220
SfuI	TTCGAA	1 cut(s)	276
SinI	GGWCC	3 cut(s)	476, 838, 1129
SmiMI	CAYNNNNRTG	1 cut(s)	356
Sse9I	AATT	6 cut(s)	198, 247, 282, 627, 1038, 1161
SsiI	CCGC	2 cut(s)	564, 1118
SspI	AATATT	1 cut(s)	1107
SspMI	CTAG	1 cut(s)	135
TaaI	ACNGT	3 cut(s)	145, 376, 1061
TaiI	ACGT	3 cut(s)	661, 921, 1178
TaqI	TCGA	2 cut(s)	82, 276
TasI	AATT	6 cut(s)	198, 247, 282, 627, 1038, 1161
TauI	GCSGC	1 cut(s)	1120
TfiI	GAWTC	5 cut(s)	8, 158, 392, 541, 617
Tru1I	TTAA	5 cut(s)	378, 386, 900, 975, 1052
Tru9I	TTAA	5 cut(s)	378, 386, 900, 975, 1052
TscAI	CASTG	4 cut(s)	168, 717, 999, 1064
TseFI	GTSAC	2 cut(s)	25, 118
TseI	GCWGC	2 cut(s)	89, 671
Tsp45I	GTSAC	2 cut(s)	25, 118
TspDTI	ATGAA	3 cut(s)	115, 206, 660
TspRI	CASTG	4 cut(s)	168, 717, 999, 1064
Van91I	CCANNNNNTGG	1 cut(s)	1040
VpaK11BI	GGWCC	3 cut(s)	476, 838, 1129
XapI	RAATTY	1 cut(s)	627
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1037
XmnI	GAANNNNTTC	1 cut(s)	282
XspI	CTAG	1 cut(s)	135

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.