Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00751

Orthogroup ID

OG0001611

Physical Location & Seq

Genomic Coordinates Forward (+)

536303 .. 537615

Gene Structure 1313 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G016800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1203 bp

ATGTCATCAGAATGCGGTAACGTCCTCCTCCGGCGAGCCCAGGCTCATGTCGTTCTCCTCCCAAGCGCCGGCATGGGCCATCTGACACCCTTTCTACGACTTGCCGCATTGCTATCCCAAAACCACCGCTGCCAGCTGACCCTCATCACCACCCACCCCACTGTCTCACTCGCCGAGTCTTCTCTCATCTCTCGCTTCCTCTCTGCCTTCCCTCACGTCACTCAAATCCATTCCACCTCCTTCCTCTCGACCCCCACCACCGTCAACTCAACCGACCCCTTTTTCCTCAGATTCGAAGCCATTCGCCGCTCCGCTCATCTCCTCTCCCCCCTGCTCTCCTCTCTTTCCTCGCCTCCCTCTGCTCTCGTTTATGACGTGAGCTTAATATCTCCTGTCCTCACCGTCATTGAAGCTCTTTCGTTTCGCCTTCCTGCATACATTTTCTTCACCTCCTCAGCCAGAATGCTCTCCCTCTTTTCTTACTACCACCTGTCTTTCGCTAATATATTCATGCAGGACGGTCCAAAACTCCCTAGATTTAATGGGATTTTGATCAATACTTTCGACGGGATAGAAACAGAGGAGGTGGAGTTGCTGAATGGAGGAAAACTAATCGAAGCGTTGCCTCCACTATTTGCTGTTGGGCCTTTAGTGCCCTGTGAGTTTGAGAAGGTTGATGATGAACAATTGGGAAATGCACAACTATTGAAGTGGCTTGATGATCAGGCTGAAGGGTCAGTGGTGTATGTGAGCTTTGGAAGCAGAACAGCTCTCTCAAGAGATCAGATCAAAGAGCTTGGTGATGGGTTGGTGAGATGTGGGTTTCGGTTTCTGTGGGTGGTGAAGGAGAAGCTAGTAGACAGAGAGGAAGAAGAGGGTAGTTTGGAGATTATGGAGAAAATGGAGGGCAAAGGGTTGGTGGTGAAGCATTGGGTGGACCAAGGAGACATCTTGGGTCACAAGGCAGTGGGAGGGTTTTTGAGTCACTGTGGTTGGAATTCAGTGGTGGAAGCTGCCTGGTATGGTGTAAGAATCCTAGCTTGGCCACAAAATGGGGATCAGAAGCTCAATGCAGAGGTGGTTGAGAGAAGTGGGCTTGGGATATGGGCCAGAACTTGGGCCTGGACCGGAGATGACCCGGTGGTGGTGGTGAAGGGTGAAGACATTGCTGTGAAGATCAAAGATCTGATGAGCTCAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0047243 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

400

Amino Acids

44.22

Weight (kDa)

5.52

Isoelectric Point (pI)

42.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UDPGT	PF00201	242 - 374	2e-15	UDP-glucoronosyl and UDP-glucosyl transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001611)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g47620
malus_domestica	MD16G1064500.v1.1 MD16G1276100.v1.1 MD17G1055500.v1.1
prunus_persica	Prupe.1G282300_v2.0.a1 Prupe.3G260200_v2.0.a1
pyrus_communis	pycom16g05630 pycom16g05640 pycom17g05420
rosa_chinensis	RchiOBHm_Chr2g0166721 RchiOBHm_Chr4g0438831 RchiOBHm_Chr4g0438841
rosa_laevigata	RLG00000006326 RLG00000006327 RLG00000021642
rosa_multiflora	Rmu_co8237817.1_g000001 Rmu_sc0000431.1_g000011 Rmu_sc0002181.1_g000012 Rmu_sc0002505.1_g000018 Rmu_sc0002505.1_g000020 Rmu_sc0003748.1_g000012 Rmu_sc0005433.1_g000002 Rmu_sc0007415.1_g000054 Rmu_sc0009639.1_g000019 Rmu_sc0023543.1_g000001 Rmu_sc0041865.1_g000001
rosa_roxburghii	Rroxscaffold_2G00084290 Rroxscaffold_2G00084610 Rroxscaffold_5G00379870
rosa_rugosa	Rorug02G0525100 Rorug04G0313400 Rorug04G0313400
rosa_samantha	Rh1AG297400 Rh2AG591400 Rh2BG000200 Rh2BG603100 Rh2CG574200 Rh2DG614000 Rh4AG192000 Rh4AG364400 Rh4BG375500 Rh4CG389600 Rh4DG370100 Rh4DG370200 Rh5DG208500 Rh7CG204500
rosa_wichuraiana	Rw0G007250 Rw0G016800 Rw2G049270 Rw4G016330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	1052, 1116
AccBSI	CCGCTC	2 cut(s)	309, 314
AccI	GTMKAC	1 cut(s)	858
AciI	CCGC	5 cut(s)	15, 105, 127, 307, 312
AclWI	GGATC	1 cut(s)	1065
AcoI	YGGCCR	1 cut(s)	1043
AcsI	RAATTY	1 cut(s)	997
AcuI	CTGAAG	1 cut(s)	750
AfiI	CCNNNNNNNGG	4 cut(s)	68, 1052, 1116, 1144
AgsI	TTSAA	2 cut(s)	410, 709
AjiI	CACGTC	2 cut(s)	217, 376
AjnI	CCWGG	3 cut(s)	39, 1016, 1121
AjuI	GAANNNNNNNTTGG	2 cut(s)	1024, 1056
Alw21I	GWGCWC	1 cut(s)	1196
Alw26I	GTCTC	2 cut(s)	169, 939
AlwI	GGATC	1 cut(s)	1065
AoxI	GGCC	5 cut(s)	76, 644, 1043, 1107, 1119
ApeKI	GCWGC	2 cut(s)	129, 1013
ApoI	RAATTY	1 cut(s)	997
Asp700I	GAANNNNTTC	1 cut(s)	300
AspLEI	GCGC	1 cut(s)	68
AspS9I	GGNCC	7 cut(s)	76, 521, 644, 937, 1107, 1119, 1125
AsuC2I	CCSGG	1 cut(s)	1139
AsuHPI	GGTGA	9 cut(s)	139, 391, 439, 812, 823, 853, 934, 1162, 1169
AsuII	TTCGAA	1 cut(s)	294
AvaII	GGWCC	3 cut(s)	521, 937, 1125
BaeGI	GKGCMC	1 cut(s)	657
BalI	TGGCCA	1 cut(s)	1045
BanII	GRGCYC	2 cut(s)	40, 1196
BbsI	GAAGAC	2 cut(s)	171, 1167
Bbv12I	GWGCWC	1 cut(s)	1196
BbvCI	CCTCAGC	1 cut(s)	454
BbvI	GCAGC	2 cut(s)	116, 1000
BccI	CCATC	2 cut(s)	87, 797
BciT130I	CCWGG	3 cut(s)	41, 1018, 1123
BclI	TGATCA	2 cut(s)	552, 721
BcnI	CCSGG	1 cut(s)	1139
BcoDI	GTCTC	2 cut(s)	169, 939
BfaI	CTAG	3 cut(s)	534, 854, 1037
BfoI	RGCGCY	1 cut(s)	69
BglII	AGATCT	1 cut(s)	1183
BisI	GCNGC	4 cut(s)	105, 130, 307, 1014
BlsI	GCNGC	4 cut(s)	106, 131, 308, 1015
Bme1390I	CCNGG	4 cut(s)	41, 1018, 1123, 1139
Bme18I	GGWCC	3 cut(s)	521, 937, 1125
BmgBI	CACGTC	2 cut(s)	217, 376
BmgT120I	GGNCC	7 cut(s)	76, 521, 644, 937, 1107, 1119, 1125
BmrFI	CCNGG	4 cut(s)	41, 1018, 1123, 1139
BpiI	GAAGAC	2 cut(s)	171, 1167
Bpu10I	CCTNAGC	1 cut(s)	454
Bpu14I	TTCGAA	1 cut(s)	294
BpuEI	CTTGAG	1 cut(s)	760
BpuMI	CCSGG	1 cut(s)	1139
BsaBI	GATNNNNATC	1 cut(s)	551
BsaJI	CCNNGG	2 cut(s)	39, 940
BsaWI	WCCGGW	1 cut(s)	1127
BsaXI	ACNNNNNCTCC	2 cut(s)	575, 605
Bsc4I	CCNNNNNNNGG	4 cut(s)	68, 1052, 1116, 1144
Bse118I	RCCGGY	1 cut(s)	68
Bse3DI	GCAATG	2 cut(s)	107, 1164
Bse8I	GATNNNNATC	1 cut(s)	551
BseBI	CCWGG	3 cut(s)	41, 1018, 1123
BseDI	CCNNGG	2 cut(s)	39, 940
BseJI	GATNNNNATC	1 cut(s)	551
BseLI	CCNNNNNNNGG	4 cut(s)	68, 1052, 1116, 1144
BseMI	GCAATG	2 cut(s)	107, 1164
BseMII	CTCAG	2 cut(s)	301, 468
BseRI	GAGGAG	6 cut(s)	17, 47, 311, 328, 442, 596
BseSI	GKGCMC	1 cut(s)	657
BseXI	GCAGC	2 cut(s)	116, 1000
BshFI	GGCC	5 cut(s)	78, 646, 1045, 1109, 1121
BsiHKAI	GWGCWC	1 cut(s)	1196
BsiSI	CCGG	4 cut(s)	31, 69, 1128, 1139
BslI	CCNNNNNNNGG	4 cut(s)	68, 1052, 1116, 1144
BsmAI	GTCTC	2 cut(s)	169, 939
BsmI	GAATGC	2 cut(s)	17, 468
BsnI	GGCC	5 cut(s)	78, 646, 1045, 1109, 1121
Bsp119I	TTCGAA	1 cut(s)	294
Bsp1286I	GDGCHC	3 cut(s)	40, 657, 1196
Bsp143I	GATC	7 cut(s)	552, 721, 781, 786, 1057, 1176, 1183
BspACI	CCGC	5 cut(s)	15, 105, 127, 307, 312
BspANI	GGCC	5 cut(s)	78, 646, 1045, 1109, 1121
BspCNI	CTCAG	2 cut(s)	300, 467
BspPI	GGATC	1 cut(s)	1065
BspT104I	TTCGAA	1 cut(s)	294
BsrBI	CCGCTC	2 cut(s)	309, 314
BsrDI	GCAATG	2 cut(s)	107, 1164
BsrFI	RCCGGY	1 cut(s)	68
BssAI	RCCGGY	1 cut(s)	68
BssECI	CCNNGG	2 cut(s)	39, 940
BssMI	GATC	7 cut(s)	552, 721, 781, 786, 1057, 1176, 1183
BssT1I	CCWWGG	1 cut(s)	940
Bst2UI	CCWGG	3 cut(s)	41, 1018, 1123
Bst4CI	ACNGT	5 cut(s)	163, 262, 403, 521, 989
Bst6I	CTCTTC	1 cut(s)	867
BstBI	TTCGAA	1 cut(s)	294
BstC8I	GCNNGC	3 cut(s)	36, 70, 134
BstDEI	CTNAG	3 cut(s)	287, 454, 1195
BstH2I	RGCGCY	1 cut(s)	69
BstHHI	GCGC	1 cut(s)	68
BstKTI	GATC	7 cut(s)	555, 724, 784, 789, 1060, 1179, 1186
BstMAI	GTCTC	2 cut(s)	169, 939
BstMBI	GATC	7 cut(s)	552, 721, 781, 786, 1057, 1176, 1183
BstMWI	GCNNNNNNNGC	2 cut(s)	652, 759
BstNI	CCWGG	3 cut(s)	41, 1018, 1123
BstSCI	CCNGG	4 cut(s)	39, 1016, 1121, 1137
BstSLI	GKGCMC	1 cut(s)	657
BstV1I	GCAGC	2 cut(s)	116, 1000
BstV2I	GAAGAC	2 cut(s)	171, 1167
BstX2I	RGATCY	1 cut(s)	1183
BstYI	RGATCY	1 cut(s)	1183
BsuRI	GGCC	5 cut(s)	78, 646, 1045, 1109, 1121
BtrI	CACGTC	2 cut(s)	217, 376
BtsI	GCAGTG	1 cut(s)	972
BtsIMutI	CAGTG	5 cut(s)	159, 744, 972, 985, 1008
Cac8I	GCNNGC	3 cut(s)	36, 70, 134
CfoI	GCGC	1 cut(s)	68
Cfr10I	RCCGGY	1 cut(s)	68
Cfr13I	GGNCC	7 cut(s)	76, 521, 644, 937, 1107, 1119, 1125
CviAII	CATG	3 cut(s)	47, 73, 511
DdeI	CTNAG	3 cut(s)	287, 454, 1195
DpnI	GATC	7 cut(s)	554, 723, 783, 788, 1059, 1178, 1185
DpnII	GATC	7 cut(s)	552, 721, 781, 786, 1057, 1176, 1183
EaeI	YGGCCR	1 cut(s)	1043
Eam1104I	CTCTTC	1 cut(s)	867
EarI	CTCTTC	1 cut(s)	867
Ecl136II	GAGCTC	1 cut(s)	1194
Eco130I	CCWWGG	1 cut(s)	940
Eco24I	GRGCYC	2 cut(s)	40, 1196
Eco47I	GGWCC	3 cut(s)	521, 937, 1125
Eco53kI	GAGCTC	1 cut(s)	1194
Eco57I	CTGAAG	1 cut(s)	750
EcoICRI	GAGCTC	1 cut(s)	1194
EcoRI	GAATTC	1 cut(s)	997
EcoRII	CCWGG	3 cut(s)	39, 1016, 1121
EcoT14I	CCWWGG	1 cut(s)	940
EcoT38I	GRGCYC	2 cut(s)	40, 1196
ErhI	CCWWGG	1 cut(s)	940
FaeI	CATG	3 cut(s)	50, 76, 514
FatI	CATG	3 cut(s)	46, 72, 510
FbaI	TGATCA	2 cut(s)	552, 721
FblI	GTMKAC	1 cut(s)	858
Fnu4HI	GCNGC	4 cut(s)	105, 130, 307, 1014
FriOI	GRGCYC	2 cut(s)	40, 1196
Fsp4HI	GCNGC	4 cut(s)	105, 130, 307, 1014
FspBI	CTAG	3 cut(s)	534, 854, 1037
GlaI	GCGC	1 cut(s)	67
GluI	GCNGC	4 cut(s)	105, 130, 307, 1014
HaeII	RGCGCY	1 cut(s)	69
HaeIII	GGCC	5 cut(s)	78, 646, 1045, 1109, 1121
HapII	CCGG	4 cut(s)	31, 69, 1128, 1139
HhaI	GCGC	1 cut(s)	68
Hin1II	CATG	3 cut(s)	50, 76, 514
Hin6I	GCGC	1 cut(s)	66
HinP1I	GCGC	1 cut(s)	66
HincII	GTYRAC	1 cut(s)	265
HindII	GTYRAC	1 cut(s)	265
HinfI	GANTC	4 cut(s)	176, 291, 982, 1032
HpaII	CCGG	4 cut(s)	31, 69, 1128, 1139
HphI	GGTGA	9 cut(s)	139, 391, 439, 812, 823, 853, 934, 1162, 1169
Hpy166II	GTNNAC	3 cut(s)	265, 859, 937
Hpy188I	TCNGA	7 cut(s)	10, 84, 290, 786, 1062, 1188, 1198
Hpy188III	TCNNGA	2 cut(s)	247, 777
Hpy8I	GTNNAC	3 cut(s)	265, 859, 937
Hpy99I	CGWCG	1 cut(s)	569
HpyAV	CCTTC	7 cut(s)	217, 250, 437, 664, 725, 838, 1147
HpyCH4III	ACNGT	5 cut(s)	163, 262, 403, 521, 989
HpyCH4IV	ACGT	3 cut(s)	21, 216, 375
HpyCH4V	TGCA	4 cut(s)	434, 514, 698, 1073
HpyF10VI	GCNNNNNNNGC	2 cut(s)	652, 759
HpyF3I	CTNAG	3 cut(s)	287, 454, 1195
HpySE526I	ACGT	3 cut(s)	21, 216, 375
Hsp92II	CATG	3 cut(s)	50, 76, 514
HspAI	GCGC	1 cut(s)	66
KroI	GCCGGC	1 cut(s)	68
KroNI	GCCGGC	1 cut(s)	70
Ksp22I	TGATCA	2 cut(s)	552, 721
Kzo9I	GATC	7 cut(s)	552, 721, 781, 786, 1057, 1176, 1183
LmnI	GCTCC	1 cut(s)	314
Lsp1109I	GCAGC	2 cut(s)	116, 1000
MaeI	CTAG	3 cut(s)	534, 854, 1037
MaeII	ACGT	3 cut(s)	21, 216, 375
MaeIII	GTNAC	4 cut(s)	17, 217, 956, 983
MalI	GATC	7 cut(s)	554, 723, 783, 788, 1059, 1178, 1185
MbiI	CCGCTC	2 cut(s)	309, 314
MboI	GATC	7 cut(s)	552, 721, 781, 786, 1057, 1176, 1183
MboII	GAAGA	6 cut(s)	171, 436, 881, 884, 1172, 1186
MfeI	CAATTG	1 cut(s)	686
MflI	RGATCY	1 cut(s)	1183
MhlI	GDGCHC	3 cut(s)	40, 657, 1196
MlsI	TGGCCA	1 cut(s)	1045
MluCI	AATT	2 cut(s)	686, 997
MluNI	TGGCCA	1 cut(s)	1045
MlyI	GAGTC	2 cut(s)	185, 991
MmeI	TCCRAC	1 cut(s)	974
Mox20I	TGGCCA	1 cut(s)	1045
MroNI	GCCGGC	1 cut(s)	68
MroXI	GAANNNNTTC	1 cut(s)	300
MscI	TGGCCA	1 cut(s)	1045
MseI	TTAA	2 cut(s)	383, 540
MslI	CAYNNNNRTG	2 cut(s)	10, 1169
Msp20I	TGGCCA	1 cut(s)	1045
MspA1I	CMGCKG	2 cut(s)	129, 136
MspI	CCGG	4 cut(s)	31, 69, 1128, 1139
MspR9I	CCNGG	4 cut(s)	41, 1018, 1123, 1139
MunI	CAATTG	1 cut(s)	686
Mva1269I	GAATGC	2 cut(s)	17, 468
MvaI	CCWGG	3 cut(s)	41, 1018, 1123
MwoI	GCNNNNNNNGC	2 cut(s)	652, 759
NaeI	GCCGGC	1 cut(s)	70
NciI	CCSGG	1 cut(s)	1139
NdeII	GATC	7 cut(s)	552, 721, 781, 786, 1057, 1176, 1183
NgoMIV	GCCGGC	1 cut(s)	68
NlaIII	CATG	3 cut(s)	50, 76, 514
NmeAIII	GCCGAG	1 cut(s)	199
NmuCI	GTSAC	3 cut(s)	217, 956, 983
NspV	TTCGAA	1 cut(s)	294
PcsI	WCGNNNNNNNCGW	1 cut(s)	372
PctI	GAATGC	2 cut(s)	17, 468
PdiI	GCCGGC	1 cut(s)	70
PdmI	GAANNNNTTC	1 cut(s)	300
PfeI	GAWTC	2 cut(s)	291, 1032
PflMI	CCANNNNNTGG	2 cut(s)	1052, 1116
PkrI	GCNGC	4 cut(s)	106, 131, 308, 1015
PleI	GAGTC	2 cut(s)	184, 990
PpsI	GAGTC	2 cut(s)	184, 990
Psp124BI	GAGCTC	1 cut(s)	1196
Psp6I	CCWGG	3 cut(s)	39, 1016, 1121
PspGI	CCWGG	3 cut(s)	39, 1016, 1121
PspPI	GGNCC	7 cut(s)	76, 521, 644, 937, 1107, 1119, 1125
PsuI	RGATCY	1 cut(s)	1183
PvuII	CAGCTG	1 cut(s)	136
RseI	CAYNNNNRTG	2 cut(s)	10, 1169
SacI	GAGCTC	1 cut(s)	1196
SaqAI	TTAA	2 cut(s)	383, 540
SatI	GCNGC	4 cut(s)	105, 130, 307, 1014
Sau3AI	GATC	7 cut(s)	552, 721, 781, 786, 1057, 1176, 1183
Sau96I	GGNCC	7 cut(s)	76, 521, 644, 937, 1107, 1119, 1125
SchI	GAGTC	2 cut(s)	185, 991
ScrFI	CCNGG	4 cut(s)	41, 1018, 1123, 1139
SduI	GDGCHC	3 cut(s)	40, 657, 1196
SfuI	TTCGAA	1 cut(s)	294
SinI	GGWCC	3 cut(s)	521, 937, 1125
SmiMI	CAYNNNNRTG	2 cut(s)	10, 1169
SmlI	CTYRAG	1 cut(s)	775
SmoI	CTYRAG	1 cut(s)	775
Sse9I	AATT	2 cut(s)	686, 997
SsiI	CCGC	5 cut(s)	15, 105, 127, 307, 312
SspMI	CTAG	3 cut(s)	534, 854, 1037
SstI	GAGCTC	1 cut(s)	1196
StyD4I	CCNGG	4 cut(s)	39, 1016, 1121, 1137
StyI	CCWWGG	1 cut(s)	940
TaaI	ACNGT	5 cut(s)	163, 262, 403, 521, 989
TaiI	ACGT	3 cut(s)	24, 219, 378
TaqI	TCGA	4 cut(s)	248, 294, 564, 615
TasI	AATT	2 cut(s)	686, 997
TauI	GCSGC	2 cut(s)	107, 309
TfiI	GAWTC	2 cut(s)	291, 1032
Tru1I	TTAA	2 cut(s)	383, 540
Tru9I	TTAA	2 cut(s)	383, 540
TscAI	CASTG	5 cut(s)	166, 744, 972, 992, 1008
TseFI	GTSAC	3 cut(s)	217, 956, 983
TseI	GCWGC	2 cut(s)	129, 1013
Tsp45I	GTSAC	3 cut(s)	217, 956, 983
TspDTI	ATGAA	2 cut(s)	499, 696
TspRI	CASTG	5 cut(s)	166, 744, 972, 992, 1008
Van91I	CCANNNNNTGG	2 cut(s)	1052, 1116
VpaK11BI	GGWCC	3 cut(s)	521, 937, 1125
XapI	RAATTY	1 cut(s)	997
XmiI	GTMKAC	1 cut(s)	858
XmnI	GAANNNNTTC	1 cut(s)	300
XspI	CTAG	3 cut(s)	534, 854, 1037

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.