Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005433.1

Orthogroup ID

OG0001611

Physical Location & Seq

Genomic Coordinates Forward (+)

1535 .. 3563

Gene Structure 2029 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005433.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

atgagtccacaagcttcacaatgcgattatggttgtataaaggaacatgtatcattcatactagcatggctagatgatcaaccaactggatcagtgttctatgtcagctttgggagtaggactgcaatgtcaagggagcaaatcaaagagttgggtgaaggcttggtgaggactgggtttaggtttctgtgggtcgtgaaagataagaaagttgacatggaagacgatgagaaactgactgaggtgcttggacaggggttactggaaagagtgaaggaaaagggaccagacttggctgaaccaataggagcatggtcgcaacatggggaccagaaaatcaatgccgacttagtgcagagacttgggctgggagtgtgggttaagagtaggggttggagtgaggaggagatggtggtggaagcagaggatattgcagagagggcgtaccagcaccgcgaggtgcagtcgtcgggggagtcccttggcctgacttcttctttaagcgctgtggacgaggagagcaccaacctcgccatagggttcttctctagcctttcgggaaaggactttttccttacggataaggactttgggtgtgatctcttcgctttactgggttgcgagggcgttacccttgattcactggtagtatctatggcagtagcactgatagtcggctcggagagactaggactgagagtacaatcgccgggtttcaacatggttgaagcgccgcaagatgatattccggccgacgctatcgctctctacggcctacccgtccgtcggcccattccagtcctccgaaggactcctggagatttcagtagctggggcgcccagaaccatcaagccaaaatagggcattggtcgtcctccatcagtccaacagagacttcttggtatcgcgaaacgcgggcgcgagatctagctcgctggaatgcagcaggtatcacgcatactattgatctatgcttccatcttccgcgtggtggcaatcgctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0047243 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

334

Amino Acids

36.89

Weight (kDa)

5.01

Isoelectric Point (pI)

40.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001611)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g47620
malus_domestica	MD16G1064500.v1.1 MD16G1276100.v1.1 MD17G1055500.v1.1
prunus_persica	Prupe.1G282300_v2.0.a1 Prupe.3G260200_v2.0.a1
pyrus_communis	pycom16g05630 pycom16g05640 pycom17g05420
rosa_chinensis	RchiOBHm_Chr2g0166721 RchiOBHm_Chr4g0438831 RchiOBHm_Chr4g0438841
rosa_laevigata	RLG00000006326 RLG00000006327 RLG00000021642
rosa_multiflora	Rmu_co8237817.1_g000001 Rmu_sc0000431.1_g000011 Rmu_sc0002181.1_g000012 Rmu_sc0002505.1_g000018 Rmu_sc0002505.1_g000020 Rmu_sc0003748.1_g000012 Rmu_sc0005433.1_g000002 Rmu_sc0007415.1_g000054 Rmu_sc0009639.1_g000019 Rmu_sc0023543.1_g000001 Rmu_sc0041865.1_g000001
rosa_roxburghii	Rroxscaffold_2G00084290 Rroxscaffold_2G00084610 Rroxscaffold_5G00379870
rosa_rugosa	Rorug02G0525100 Rorug04G0313400 Rorug04G0313400
rosa_samantha	Rh1AG297400 Rh2AG591400 Rh2BG000200 Rh2BG603100 Rh2CG574200 Rh2DG614000 Rh4AG192000 Rh4AG364400 Rh4BG375500 Rh4CG389600 Rh4DG370100 Rh4DG370200 Rh5DG208500 Rh7CG204500
rosa_wichuraiana	Rw0G007250 Rw0G016800 Rw2G049270 Rw4G016330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	127
Acc36I	ACCTGC	1 cut(s)	938
AccB1I	GGYRCC	1 cut(s)	836
AccII	CGCG	5 cut(s)	456, 909, 916, 922, 988
AciI	CCGC	4 cut(s)	454, 734, 916, 986
AclWI	GGATC	1 cut(s)	97
AcoI	YGGCCR	1 cut(s)	750
AcyI	GRCGYC	1 cut(s)	837
AfaI	GTAC	2 cut(s)	446, 702
AfeI	AGCGCT	1 cut(s)	505
AfiI	CCNNNNNNNGG	3 cut(s)	786, 861, 992
AflIII	ACRYGT	1 cut(s)	46
AgsI	TTSAA	2 cut(s)	718, 728
AjnI	CCWGG	1 cut(s)	814
AjuI	GAANNNNNNNTTGG	2 cut(s)	880, 912
AluBI	AGCT	4 cut(s)	14, 108, 831, 932
AluI	AGCT	4 cut(s)	14, 108, 831, 932
Alw21I	GWGCWC	1 cut(s)	524
Alw26I	GTCTC	3 cut(s)	352, 679, 887
AlwI	GGATC	1 cut(s)	97
AlwNI	CAGNNNCTG	1 cut(s)	831
Aor51HI	AGCGCT	1 cut(s)	505
AoxI	GGCC	4 cut(s)	484, 750, 772, 788
ApeKI	GCWGC	1 cut(s)	944
AspLEI	GCGC	4 cut(s)	506, 733, 839, 922
AspS9I	GGNCC	3 cut(s)	284, 328, 789
AsuC2I	CCSGG	1 cut(s)	711
AsuHPI	GGTGA	2 cut(s)	167, 178
AvaII	GGWCC	2 cut(s)	284, 328
BanI	GGYRCC	1 cut(s)	836
BbsI	GAAGAC	1 cut(s)	228
Bbv12I	GWGCWC	1 cut(s)	524
BbvI	GCAGC	1 cut(s)	956
BccI	CCATC	4 cut(s)	403, 855, 887, 987
BceAI	ACGGC	1 cut(s)	787
BcgI	CGANNNNNNTGC	2 cut(s)	511, 545
BciT130I	CCWGG	1 cut(s)	816
BclI	TGATCA	1 cut(s)	76
BcnI	CCSGG	1 cut(s)	711
BcoDI	GTCTC	3 cut(s)	352, 679, 887
BfaI	CTAG	6 cut(s)	62, 71, 549, 689, 929, 1003
BfoI	RGCGCY	3 cut(s)	507, 734, 840
BfuAI	ACCTGC	1 cut(s)	938
BglII	AGATCT	1 cut(s)	925
BisI	GCNGC	2 cut(s)	734, 945
BlsI	GCNGC	2 cut(s)	735, 946
Bme1390I	CCNGG	2 cut(s)	711, 816
Bme18I	GGWCC	2 cut(s)	284, 328
BmgT120I	GGNCC	3 cut(s)	284, 328, 789
BmiI	GGNNCC	3 cut(s)	285, 329, 838
BmrFI	CCNGG	2 cut(s)	711, 816
BmrI	ACTGGG	2 cut(s)	183, 623
BmuI	ACTGGG	2 cut(s)	183, 623
BpiI	GAAGAC	1 cut(s)	228
BpmI	CTGGAG	1 cut(s)	837
BpuMI	CCSGG	1 cut(s)	711
BsaHI	GRCGYC	1 cut(s)	837
BsaJI	CCNNGG	1 cut(s)	481
BsaXI	ACNNNNNCTCC	2 cut(s)	363, 393
Bsc4I	CCNNNNNNNGG	3 cut(s)	786, 861, 992
Bse1I	ACTGG	6 cut(s)	91, 178, 267, 618, 648, 797
Bse3DI	GCAATG	1 cut(s)	132
BseBI	CCWGG	1 cut(s)	816
BseDI	CCNNGG	1 cut(s)	481
BseLI	CCNNNNNNNGG	3 cut(s)	786, 861, 992
BseMI	GCAATG	1 cut(s)	132
BseMII	CTCAG	2 cut(s)	231, 686
BseNI	ACTGG	6 cut(s)	91, 178, 267, 618, 648, 797
BseRI	GAGGAG	3 cut(s)	416, 419, 530
BseX3I	CGGCCG	1 cut(s)	750
BseXI	GCAGC	1 cut(s)	956
BseYI	CCCAGC	2 cut(s)	367, 831
BsgI	GTGCAG	2 cut(s)	374, 482
Bsh1236I	CGCG	5 cut(s)	456, 909, 916, 922, 988
Bsh1285I	CGRYCG	1 cut(s)	753
BshFI	GGCC	4 cut(s)	486, 752, 774, 790
BshNI	GGYRCC	1 cut(s)	836
BsiEI	CGRYCG	1 cut(s)	753
BsiHKAI	GWGCWC	1 cut(s)	524
BsiSI	CCGG	2 cut(s)	710, 749
BslFI	GGGAC	3 cut(s)	297, 341, 463
BslI	CCNNNNNNNGG	3 cut(s)	786, 861, 992
BsmAI	GTCTC	3 cut(s)	352, 679, 887
BsmFI	GGGAC	3 cut(s)	297, 341, 463
BsmI	GAATGC	1 cut(s)	946
BsnI	GGCC	4 cut(s)	486, 752, 774, 790
Bsp1286I	GDGCHC	1 cut(s)	524
Bsp143I	GATC	5 cut(s)	76, 89, 598, 925, 967
Bsp68I	TCGCGA	1 cut(s)	909
BspACI	CCGC	4 cut(s)	454, 734, 916, 986
BspANI	GGCC	4 cut(s)	486, 752, 774, 790
BspCNI	CTCAG	2 cut(s)	232, 687
BspFNI	CGCG	5 cut(s)	456, 909, 916, 922, 988
BspLI	GGNNCC	3 cut(s)	285, 329, 838
BspMI	ACCTGC	1 cut(s)	938
BspPI	GGATC	1 cut(s)	97
BspT107I	GGYRCC	1 cut(s)	836
BsrDI	GCAATG	1 cut(s)	132
BsrI	ACTGG	6 cut(s)	91, 178, 267, 618, 648, 797
BssECI	CCNNGG	1 cut(s)	481
BssMI	GATC	5 cut(s)	76, 89, 598, 925, 967
BssNI	GRCGYC	1 cut(s)	837
BssT1I	CCWWGG	1 cut(s)	481
Bst2UI	CCWGG	1 cut(s)	816
Bst6I	CTCTTC	1 cut(s)	608
BstACI	GRCGYC	1 cut(s)	837
BstC8I	GCNNGC	2 cut(s)	918, 934
BstDEI	CTNAG	3 cut(s)	240, 349, 695
BstFNI	CGCG	5 cut(s)	456, 909, 916, 922, 988
BstH2I	RGCGCY	3 cut(s)	507, 734, 840
BstHHI	GCGC	4 cut(s)	506, 733, 839, 922
BstKTI	GATC	5 cut(s)	79, 92, 601, 928, 970
BstMAI	GTCTC	3 cut(s)	352, 679, 887
BstMBI	GATC	5 cut(s)	76, 89, 598, 925, 967
BstMCI	CGRYCG	1 cut(s)	753
BstMWI	GCNNNNNNNGC	1 cut(s)	440
BstNI	CCWGG	1 cut(s)	816
BstNSI	RCATGY	1 cut(s)	50
BstSCI	CCNGG	2 cut(s)	709, 814
BstUI	CGCG	5 cut(s)	456, 909, 916, 922, 988
BstV1I	GCAGC	1 cut(s)	956
BstV2I	GAAGAC	1 cut(s)	228
BstX2I	RGATCY	1 cut(s)	925
BstYI	RGATCY	1 cut(s)	925
BstZI	CGGCCG	1 cut(s)	750
BsuRI	GGCC	4 cut(s)	486, 752, 774, 790
BtsIMutI	CAGTG	3 cut(s)	99, 641, 665
BtuMI	TCGCGA	1 cut(s)	909
BveI	ACCTGC	1 cut(s)	938
Cac8I	GCNNGC	2 cut(s)	918, 934
CaiI	CAGNNNCTG	1 cut(s)	831
CfoI	GCGC	4 cut(s)	506, 733, 839, 922
Cfr13I	GGNCC	3 cut(s)	284, 328, 789
CseI	GACGC	1 cut(s)	764
Csp6I	GTAC	2 cut(s)	445, 701
CviAII	CATG	6 cut(s)	47, 66, 217, 312, 323, 721
CviQI	GTAC	2 cut(s)	445, 701
DdeI	CTNAG	3 cut(s)	240, 349, 695
DinI	GGCGCC	1 cut(s)	838
DpnI	GATC	5 cut(s)	78, 91, 600, 927, 969
DpnII	GATC	5 cut(s)	76, 89, 598, 925, 967
DrdI	GACNNNNNNGTC	1 cut(s)	127
DseDI	GACNNNNNNGTC	1 cut(s)	127
EaeI	YGGCCR	1 cut(s)	750
EagI	CGGCCG	1 cut(s)	750
Eam1104I	CTCTTC	1 cut(s)	608
EarI	CTCTTC	1 cut(s)	608
EclXI	CGGCCG	1 cut(s)	750
Eco130I	CCWWGG	1 cut(s)	481
Eco47I	GGWCC	2 cut(s)	284, 328
Eco47III	AGCGCT	1 cut(s)	505
Eco52I	CGGCCG	1 cut(s)	750
EcoRII	CCWGG	1 cut(s)	814
EcoT14I	CCWWGG	1 cut(s)	481
EgeI	GGCGCC	1 cut(s)	838
EheI	GGCGCC	1 cut(s)	838
ErhI	CCWWGG	1 cut(s)	481
FaeI	CATG	6 cut(s)	50, 69, 220, 315, 326, 724
FaqI	GGGAC	3 cut(s)	297, 341, 463
FatI	CATG	6 cut(s)	46, 65, 216, 311, 322, 720
FauI	CCCGC	1 cut(s)	909
FbaI	TGATCA	1 cut(s)	76
Fnu4HI	GCNGC	2 cut(s)	734, 945
Fsp4HI	GCNGC	2 cut(s)	734, 945
FspBI	CTAG	6 cut(s)	62, 71, 549, 689, 929, 1003
GlaI	GCGC	4 cut(s)	505, 732, 838, 921
GluI	GCNGC	2 cut(s)	734, 945
GsaI	CCCAGC	2 cut(s)	371, 835
GsuI	CTGGAG	1 cut(s)	837
HaeII	RGCGCY	3 cut(s)	507, 734, 840
HaeIII	GGCC	4 cut(s)	486, 752, 774, 790
HapII	CCGG	2 cut(s)	710, 749
HgaI	GACGC	1 cut(s)	764
HhaI	GCGC	4 cut(s)	506, 733, 839, 922
Hin1I	GRCGYC	1 cut(s)	837
Hin1II	CATG	6 cut(s)	50, 69, 220, 315, 326, 724
Hin6I	GCGC	4 cut(s)	504, 731, 837, 920
HinP1I	GCGC	4 cut(s)	504, 731, 837, 920
HincII	GTYRAC	1 cut(s)	214
HindII	GTYRAC	1 cut(s)	214
HindIII	AAGCTT	1 cut(s)	12
HinfI	GANTC	4 cut(s)	4, 476, 638, 811
HpaII	CCGG	2 cut(s)	710, 749
HphI	GGTGA	2 cut(s)	167, 178
Hpy166II	GTNNAC	3 cut(s)	8, 214, 511
Hpy188I	TCNGA	2 cut(s)	682, 806
Hpy188III	TCNNGA	3 cut(s)	196, 558, 908
Hpy8I	GTNNAC	3 cut(s)	8, 214, 511
Hpy99I	CGWCG	3 cut(s)	472, 758, 789
HpyAV	CCTTC	3 cut(s)	152, 268, 801
HpyCH4V	TGCA	5 cut(s)	125, 355, 434, 463, 944
HpyF10VI	GCNNNNNNNGC	1 cut(s)	440
HpyF3I	CTNAG	3 cut(s)	240, 349, 695
Hsp92I	GRCGYC	1 cut(s)	837
Hsp92II	CATG	6 cut(s)	50, 69, 220, 315, 326, 724
HspAI	GCGC	4 cut(s)	504, 731, 837, 920
KasI	GGCGCC	1 cut(s)	836
Ksp22I	TGATCA	1 cut(s)	76
Kzo9I	GATC	5 cut(s)	76, 89, 598, 925, 967
LmnI	GCTCC	2 cut(s)	136, 308
Lsp1109I	GCAGC	1 cut(s)	956
MaeI	CTAG	6 cut(s)	62, 71, 549, 689, 929, 1003
MaeIII	GTNAC	2 cut(s)	258, 628
MalI	GATC	5 cut(s)	78, 91, 600, 927, 969
MboI	GATC	5 cut(s)	76, 89, 598, 925, 967
MboII	GAAGA	5 cut(s)	233, 486, 535, 595, 974
MflI	RGATCY	1 cut(s)	925
MhlI	GDGCHC	1 cut(s)	524
Mly113I	GGCGCC	1 cut(s)	837
MlyI	GAGTC	3 cut(s)	13, 485, 805
MmeI	TCCRAC	2 cut(s)	374, 911
MseI	TTAA	2 cut(s)	381, 500
MspI	CCGG	2 cut(s)	710, 749
MspR9I	CCNGG	2 cut(s)	711, 816
Mva1269I	GAATGC	1 cut(s)	946
MvaI	CCWGG	1 cut(s)	816
MvnI	CGCG	5 cut(s)	456, 909, 916, 922, 988
MwoI	GCNNNNNNNGC	1 cut(s)	440
NarI	GGCGCC	1 cut(s)	837
NciI	CCSGG	1 cut(s)	711
NdeII	GATC	5 cut(s)	76, 89, 598, 925, 967
NlaIII	CATG	6 cut(s)	50, 69, 220, 315, 326, 724
NlaIV	GGNNCC	3 cut(s)	285, 329, 838
NruI	TCGCGA	1 cut(s)	909
NspI	RCATGY	1 cut(s)	50
PciI	ACATGT	1 cut(s)	46
PcsI	WCGNNNNNNNCGW	1 cut(s)	777
PctI	GAATGC	1 cut(s)	946
PfeI	GAWTC	1 cut(s)	638
PfoI	TCCNGGA	1 cut(s)	814
PkrI	GCNGC	2 cut(s)	735, 946
PleI	GAGTC	3 cut(s)	12, 484, 805
PluTI	GGCGCC	1 cut(s)	840
PpsI	GAGTC	3 cut(s)	12, 484, 805
PscI	ACATGT	1 cut(s)	46
Psp6I	CCWGG	1 cut(s)	814
PspFI	CCCAGC	2 cut(s)	367, 831
PspGI	CCWGG	1 cut(s)	814
PspN4I	GGNNCC	3 cut(s)	285, 329, 838
PspPI	GGNCC	3 cut(s)	284, 328, 789
PstNI	CAGNNNCTG	1 cut(s)	831
PsuI	RGATCY	1 cut(s)	925
RruI	TCGCGA	1 cut(s)	909
RsaI	GTAC	2 cut(s)	446, 702
RsaNI	GTAC	2 cut(s)	445, 701
SaqAI	TTAA	2 cut(s)	381, 500
SatI	GCNGC	2 cut(s)	734, 945
Sau3AI	GATC	5 cut(s)	76, 89, 598, 925, 967
Sau96I	GGNCC	3 cut(s)	284, 328, 789
SchI	GAGTC	3 cut(s)	13, 485, 805
ScrFI	CCNGG	2 cut(s)	711, 816
SduI	GDGCHC	1 cut(s)	524
SetI	ASST	9 cut(s)	16, 110, 185, 246, 462, 531, 833, 934, 952
SfoI	GGCGCC	1 cut(s)	838
SinI	GGWCC	2 cut(s)	284, 328
SsiI	CCGC	4 cut(s)	454, 734, 916, 986
SspDI	GGCGCC	1 cut(s)	836
SspMI	CTAG	6 cut(s)	62, 71, 549, 689, 929, 1003
StyD4I	CCNGG	2 cut(s)	709, 814
StyI	CCWWGG	1 cut(s)	481
TatI	WGTACW	1 cut(s)	700
TauI	GCSGC	1 cut(s)	736
TfiI	GAWTC	1 cut(s)	638
Tru1I	TTAA	2 cut(s)	381, 500
Tru9I	TTAA	2 cut(s)	381, 500
TscAI	CASTG	3 cut(s)	99, 648, 672
TseI	GCWGC	1 cut(s)	944
TspDTI	ATGAA	1 cut(s)	46
TspGWI	ACGGA	2 cut(s)	593, 773
TspRI	CASTG	3 cut(s)	99, 648, 672
VpaK11BI	GGWCC	2 cut(s)	284, 328
XceI	RCATGY	1 cut(s)	50
XcmI	CCANNNNNNNNNTGG	2 cut(s)	309, 986
XspI	CTAG	6 cut(s)	62, 71, 549, 689, 929, 1003

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.