Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000431.1

Orthogroup ID

OG0001611

Physical Location & Seq

Genomic Coordinates Forward (+)

90316 .. 91394

Gene Structure 1079 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000431.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

atgaagggacaagcccaaagagcccaagaacaaggcccaaagtacaaactgatgaaagaaaacaacagacaaaagctgacggcgggcaagggaggccatcagtcttcagaacacgaagcaaggatggtggtggcgtgtttcaggccatttgaagatttgaacttcaggaagagagggtttcggcatcgcggtcctgattggagcgggttgcattgccatggagattgttaccttgctcatcaacgattggctattgtggaccctgccctaggagatcagccgctctacaacgaggacaagattactgtgctagttgggtgtgacttgacgaacttgcttgattggaattttgatgaggaggacttgagattgattattaaaggtcttcatctgtatgactgtctgagggccaacaaatcgacatcagcttggggtgttgaggctcgtgtaccgtttcttgacaaagaatttatcaagactactatggacattgatccagaatggaaaatggtatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00250 ko01100 ko01110 map00250 map01100 map01110

Pfam Domains

Protein Families

Asn_synthase GATase_7

Protein Analysis

171

Amino Acids

19.73

Weight (kDa)

7.04

Isoelectric Point (pI)

35.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001611)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g47620
malus_domestica	MD16G1064500.v1.1 MD16G1276100.v1.1 MD17G1055500.v1.1
prunus_persica	Prupe.1G282300_v2.0.a1 Prupe.3G260200_v2.0.a1
pyrus_communis	pycom16g05630 pycom16g05640 pycom17g05420
rosa_chinensis	RchiOBHm_Chr2g0166721 RchiOBHm_Chr4g0438831 RchiOBHm_Chr4g0438841
rosa_laevigata	RLG00000006326 RLG00000006327 RLG00000021642
rosa_multiflora	Rmu_co8237817.1_g000001 Rmu_sc0000431.1_g000011 Rmu_sc0002181.1_g000012 Rmu_sc0002505.1_g000018 Rmu_sc0002505.1_g000020 Rmu_sc0003748.1_g000012 Rmu_sc0005433.1_g000002 Rmu_sc0007415.1_g000054 Rmu_sc0009639.1_g000019 Rmu_sc0023543.1_g000001 Rmu_sc0041865.1_g000001
rosa_roxburghii	Rroxscaffold_2G00084290 Rroxscaffold_2G00084610 Rroxscaffold_5G00379870
rosa_rugosa	Rorug02G0525100 Rorug04G0313400 Rorug04G0313400
rosa_samantha	Rh1AG297400 Rh2AG591400 Rh2BG000200 Rh2BG603100 Rh2CG574200 Rh2DG614000 Rh4AG192000 Rh4AG364400 Rh4BG375500 Rh4CG389600 Rh4DG370100 Rh4DG370200 Rh5DG208500 Rh7CG204500
rosa_wichuraiana	Rw0G007250 Rw0G016800 Rw2G049270 Rw4G016330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	204, 283
AccII	CGCG	1 cut(s)	189
AciI	CCGC	4 cut(s)	83, 189, 204, 281
AclWI	GGATC	1 cut(s)	488
AcsI	RAATTY	2 cut(s)	346, 467
AcuI	CTGAAG	2 cut(s)	90, 148
AfaI	GTAC	2 cut(s)	44, 450
AfiI	CCNNNNNNNGG	1 cut(s)	269
AgsI	TTSAA	2 cut(s)	152, 160
AluBI	AGCT	2 cut(s)	76, 428
AluI	AGCT	2 cut(s)	76, 428
AlwI	GGATC	1 cut(s)	488
AoxI	GGCC	4 cut(s)	34, 94, 143, 408
ApoI	RAATTY	2 cut(s)	346, 467
AspA2I	CCTAGG	1 cut(s)	268
AspS9I	GGNCC	4 cut(s)	35, 191, 259, 408
AvaII	GGWCC	2 cut(s)	191, 259
AvrII	CCTAGG	1 cut(s)	268
BanII	GRGCYC	1 cut(s)	25
BauI	CACGAG	1 cut(s)	444
BbsI	GAAGAC	2 cut(s)	96, 377
BccI	CCATC	2 cut(s)	105, 118
BceAI	ACGGC	1 cut(s)	96
BfaI	CTAG	2 cut(s)	269, 311
BisI	GCNGC	1 cut(s)	281
BlnI	CCTAGG	1 cut(s)	268
BlsI	GCNGC	1 cut(s)	282
Bme18I	GGWCC	2 cut(s)	191, 259
BmgT120I	GGNCC	4 cut(s)	35, 191, 259, 408
BmiI	GGNNCC	1 cut(s)	261
BmsI	GCATC	1 cut(s)	193
BpiI	GAAGAC	2 cut(s)	96, 377
BpuEI	CTTGAG	1 cut(s)	385
BsaJI	CCNNGG	2 cut(s)	217, 268
Bsc4I	CCNNNNNNNGG	1 cut(s)	269
Bse3DI	GCAATG	1 cut(s)	211
BseDI	CCNNGG	2 cut(s)	217, 268
BseGI	GGATG	1 cut(s)	129
BseLI	CCNNNNNNNGG	1 cut(s)	269
BseMI	GCAATG	1 cut(s)	211
BseMII	CTCAG	1 cut(s)	395
BseRI	GAGGAG	1 cut(s)	371
Bsh1236I	CGCG	1 cut(s)	189
BshFI	GGCC	4 cut(s)	36, 96, 145, 410
BslFI	GGGAC	1 cut(s)	21
BslI	CCNNNNNNNGG	1 cut(s)	269
BsmFI	GGGAC	1 cut(s)	21
BsnI	GGCC	4 cut(s)	36, 96, 145, 410
Bsp1286I	GDGCHC	1 cut(s)	25
Bsp143I	GATC	2 cut(s)	274, 493
Bsp19I	CCATGG	1 cut(s)	217
BspACI	CCGC	4 cut(s)	83, 189, 204, 281
BspANI	GGCC	4 cut(s)	36, 96, 145, 410
BspCNI	CTCAG	1 cut(s)	396
BspFNI	CGCG	1 cut(s)	189
BspLI	GGNNCC	1 cut(s)	261
BspPI	GGATC	1 cut(s)	488
BsrBI	CCGCTC	2 cut(s)	204, 283
BsrDI	GCAATG	1 cut(s)	211
BssECI	CCNNGG	2 cut(s)	217, 268
BssMI	GATC	2 cut(s)	274, 493
BssSI	CACGAG	1 cut(s)	444
BssT1I	CCWWGG	2 cut(s)	217, 268
Bst2BI	CACGAG	1 cut(s)	444
Bst4CI	ACNGT	3 cut(s)	307, 401, 453
Bst6I	CTCTTC	1 cut(s)	164
BstC8I	GCNNGC	1 cut(s)	85
BstDEI	CTNAG	1 cut(s)	404
BstDSI	CCRYGG	1 cut(s)	217
BstENI	CCTNNNNNAGG	1 cut(s)	267
BstF5I	GGATG	1 cut(s)	129
BstFNI	CGCG	1 cut(s)	189
BstKTI	GATC	2 cut(s)	277, 496
BstMBI	GATC	2 cut(s)	274, 493
BstMWI	GCNNNNNNNGC	2 cut(s)	20, 93
BstUI	CGCG	1 cut(s)	189
BstV2I	GAAGAC	2 cut(s)	96, 377
BsuRI	GGCC	4 cut(s)	36, 96, 145, 410
BtgI	CCRYGG	1 cut(s)	217
BtgZI	GCGATG	1 cut(s)	170
BtsCI	GGATG	1 cut(s)	129
Cac8I	GCNNGC	1 cut(s)	85
Cfr13I	GGNCC	4 cut(s)	35, 191, 259, 408
Csp6I	GTAC	2 cut(s)	43, 449
CspCI	CAANNNNNGTGG	2 cut(s)	108, 143
CviAII	CATG	1 cut(s)	218
CviQI	GTAC	2 cut(s)	43, 449
DdeI	CTNAG	1 cut(s)	404
DpnI	GATC	2 cut(s)	276, 495
DpnII	GATC	2 cut(s)	274, 493
Eam1104I	CTCTTC	1 cut(s)	164
EarI	CTCTTC	1 cut(s)	164
Eco130I	CCWWGG	2 cut(s)	217, 268
Eco24I	GRGCYC	1 cut(s)	25
Eco47I	GGWCC	2 cut(s)	191, 259
Eco57I	CTGAAG	2 cut(s)	90, 148
EcoNI	CCTNNNNNAGG	1 cut(s)	267
EcoT14I	CCWWGG	2 cut(s)	217, 268
EcoT38I	GRGCYC	1 cut(s)	25
ErhI	CCWWGG	2 cut(s)	217, 268
FaeI	CATG	1 cut(s)	221
FaiI	YATR	4 cut(s)	219, 396, 485, 514
FaqI	GGGAC	1 cut(s)	21
FatI	CATG	1 cut(s)	217
FauI	CCCGC	2 cut(s)	76, 197
Fnu4HI	GCNGC	1 cut(s)	281
FokI	GGATG	1 cut(s)	136
FriOI	GRGCYC	1 cut(s)	25
Fsp4HI	GCNGC	1 cut(s)	281
FspBI	CTAG	2 cut(s)	269, 311
GluI	GCNGC	1 cut(s)	281
HaeIII	GGCC	4 cut(s)	36, 96, 145, 410
Hin1II	CATG	1 cut(s)	221
Hpy166II	GTNNAC	2 cut(s)	259, 449
Hpy188I	TCNGA	2 cut(s)	109, 405
Hpy188III	TCNNGA	5 cut(s)	166, 194, 458, 475, 497
Hpy8I	GTNNAC	2 cut(s)	259, 449
HpyCH4III	ACNGT	3 cut(s)	307, 401, 453
HpyCH4V	TGCA	1 cut(s)	211
HpyF10VI	GCNNNNNNNGC	2 cut(s)	20, 93
HpyF3I	CTNAG	1 cut(s)	404
Hsp92II	CATG	1 cut(s)	221
Kzo9I	GATC	2 cut(s)	274, 493
LmnI	GCTCC	1 cut(s)	201
LpnPI	CCDG	5 cut(s)	127, 151, 207, 276, 510
LweI	GCATC	1 cut(s)	193
MaeI	CTAG	2 cut(s)	269, 311
MaeIII	GTNAC	2 cut(s)	227, 320
MalI	GATC	2 cut(s)	276, 495
MbiI	CCGCTC	2 cut(s)	204, 283
MboI	GATC	2 cut(s)	274, 493
MboII	GAAGA	4 cut(s)	96, 164, 181, 377
MhlI	GDGCHC	1 cut(s)	25
MluCI	AATT	2 cut(s)	346, 467
MnlI	CCTC	7 cut(s)	86, 167, 286, 349, 352, 399, 433
MseI	TTAA	1 cut(s)	378
MslI	CAYNNNNRTG	2 cut(s)	216, 393
MvnI	CGCG	1 cut(s)	189
MwoI	GCNNNNNNNGC	2 cut(s)	20, 93
NcoI	CCATGG	1 cut(s)	217
NdeII	GATC	2 cut(s)	274, 493
NlaIII	CATG	1 cut(s)	221
NlaIV	GGNNCC	1 cut(s)	261
NmuCI	GTSAC	1 cut(s)	320
PkrI	GCNGC	1 cut(s)	282
PspN4I	GGNNCC	1 cut(s)	261
PspPI	GGNCC	4 cut(s)	35, 191, 259, 408
RsaI	GTAC	2 cut(s)	44, 450
RsaNI	GTAC	2 cut(s)	43, 449
RseI	CAYNNNNRTG	2 cut(s)	216, 393
SaqAI	TTAA	1 cut(s)	378
SatI	GCNGC	1 cut(s)	281
Sau3AI	GATC	2 cut(s)	274, 493
Sau96I	GGNCC	4 cut(s)	35, 191, 259, 408
SduI	GDGCHC	1 cut(s)	25
SetI	ASST	4 cut(s)	78, 234, 385, 430
SfaNI	GCATC	1 cut(s)	193
SinI	GGWCC	2 cut(s)	191, 259
SmiMI	CAYNNNNRTG	2 cut(s)	216, 393
SmlI	CTYRAG	1 cut(s)	364
SmoI	CTYRAG	1 cut(s)	364
Sse9I	AATT	2 cut(s)	346, 467
SsiI	CCGC	4 cut(s)	83, 189, 204, 281
SspMI	CTAG	2 cut(s)	269, 311
StyI	CCWWGG	2 cut(s)	217, 268
TaaI	ACNGT	3 cut(s)	307, 401, 453
TaqI	TCGA	1 cut(s)	419
TasI	AATT	2 cut(s)	346, 467
TatI	WGTACW	1 cut(s)	42
TauI	GCSGC	1 cut(s)	283
Tru1I	TTAA	1 cut(s)	378
Tru9I	TTAA	1 cut(s)	378
TseFI	GTSAC	1 cut(s)	320
Tsp45I	GTSAC	1 cut(s)	320
TspDTI	ATGAA	3 cut(s)	17, 68, 377
VpaK11BI	GGWCC	2 cut(s)	191, 259
XagI	CCTNNNNNAGG	1 cut(s)	267
XapI	RAATTY	2 cut(s)	346, 467
XmaJI	CCTAGG	1 cut(s)	268
XspI	CTAG	2 cut(s)	269, 311

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.