Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007415.1

Orthogroup ID

OG0001611

Physical Location & Seq

Genomic Coordinates Forward (+)

250233 .. 251209

Gene Structure 977 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007415.1_g000054.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

atgttgtatgcaactctgattttcattttacgtaaaggacattcgaagactggagctttgaacttcaggccatttgaagatttgaacttcaggaagagagggttgtggcatcgcggtcctgattggagcgggttgcattgccatagggattgttaccttgctcatcagcgattggctattgtggaccctgcctcaggagatcagccgctctacaacgaggacaagactgtcattgtcactgtactctctttcacctttgcattctcaaacttcaattccgatgaagattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004066 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0006082 GO:0006520 GO:0006528 GO:0006529 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009066 GO:0009067 GO:0009314 GO:0009416 GO:0009506 GO:0009628 GO:0009642 GO:0009646 GO:0009651 GO:0009987 GO:0016053 GO:0016874 GO:0016879 GO:0016884 GO:0019752 GO:0030054 GO:0032787 GO:0034641 GO:0042538 GO:0042802 GO:0042803 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046983 GO:0050896 GO:0055044 GO:0071704 GO:0072330 GO:0097164 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00250 ko01100 ko01110 map00250 map01100 map01110

Pfam Domains

Protein Families

Asn_synthase GATase_7

Protein Analysis

96

Amino Acids

11.1

Weight (kDa)

6.96

Isoelectric Point (pI)

27.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001611)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g47620
malus_domestica	MD16G1064500.v1.1 MD16G1276100.v1.1 MD17G1055500.v1.1
prunus_persica	Prupe.1G282300_v2.0.a1 Prupe.3G260200_v2.0.a1
pyrus_communis	pycom16g05630 pycom16g05640 pycom17g05420
rosa_chinensis	RchiOBHm_Chr2g0166721 RchiOBHm_Chr4g0438831 RchiOBHm_Chr4g0438841
rosa_laevigata	RLG00000006326 RLG00000006327 RLG00000021642
rosa_multiflora	Rmu_co8237817.1_g000001 Rmu_sc0000431.1_g000011 Rmu_sc0002181.1_g000012 Rmu_sc0002505.1_g000018 Rmu_sc0002505.1_g000020 Rmu_sc0003748.1_g000012 Rmu_sc0005433.1_g000002 Rmu_sc0007415.1_g000054 Rmu_sc0009639.1_g000019 Rmu_sc0023543.1_g000001 Rmu_sc0041865.1_g000001
rosa_roxburghii	Rroxscaffold_2G00084290 Rroxscaffold_2G00084610 Rroxscaffold_5G00379870
rosa_rugosa	Rorug02G0525100 Rorug04G0313400 Rorug04G0313400
rosa_samantha	Rh1AG297400 Rh2AG591400 Rh2BG000200 Rh2BG603100 Rh2CG574200 Rh2DG614000 Rh4AG192000 Rh4AG364400 Rh4BG375500 Rh4CG389600 Rh4DG370100 Rh4DG370200 Rh5DG208500 Rh7CG204500
rosa_wichuraiana	Rw0G007250 Rw0G016800 Rw2G049270 Rw4G016330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	227
AccBSI	CCGCTC	2 cut(s)	129, 208
AccII	CGCG	1 cut(s)	114
AciI	CCGC	3 cut(s)	114, 129, 206
AcuI	CTGAAG	2 cut(s)	49, 73
AfaI	GTAC	1 cut(s)	243
AfiI	CCNNNNNNNGG	1 cut(s)	194
AgsI	TTSAA	4 cut(s)	61, 77, 85, 274
AluBI	AGCT	1 cut(s)	56
AluI	AGCT	1 cut(s)	56
AoxI	GGCC	1 cut(s)	68
ArsI	GACNNNNNNTTYG	2 cut(s)	40, 72
AspS9I	GGNCC	2 cut(s)	116, 184
AsuHPI	GGTGA	1 cut(s)	244
AsuII	TTCGAA	1 cut(s)	44
AvaII	GGWCC	2 cut(s)	116, 184
AxyI	CCTNAGG	1 cut(s)	193
BbsI	GAAGAC	1 cut(s)	53
BisI	GCNGC	1 cut(s)	206
BlsI	GCNGC	1 cut(s)	207
Bme18I	GGWCC	2 cut(s)	116, 184
BmgT120I	GGNCC	2 cut(s)	116, 184
BmiI	GGNNCC	1 cut(s)	186
BmsI	GCATC	1 cut(s)	118
BpiI	GAAGAC	1 cut(s)	53
BpmI	CTGGAG	1 cut(s)	72
Bpu14I	TTCGAA	1 cut(s)	44
BsaAI	YACGTR	1 cut(s)	32
Bsc4I	CCNNNNNNNGG	1 cut(s)	194
Bse1I	ACTGG	1 cut(s)	55
Bse21I	CCTNAGG	1 cut(s)	193
Bse3DI	GCAATG	1 cut(s)	136
BseLI	CCNNNNNNNGG	1 cut(s)	194
BseMI	GCAATG	1 cut(s)	136
BseMII	CTCAG	1 cut(s)	207
BseNI	ACTGG	1 cut(s)	55
Bsh1236I	CGCG	1 cut(s)	114
BshFI	GGCC	1 cut(s)	70
BslI	CCNNNNNNNGG	1 cut(s)	194
BsmI	GAATGC	1 cut(s)	260
BsnI	GGCC	1 cut(s)	70
Bsp119I	TTCGAA	1 cut(s)	44
Bsp143I	GATC	1 cut(s)	199
BspACI	CCGC	3 cut(s)	114, 129, 206
BspANI	GGCC	1 cut(s)	70
BspCNI	CTCAG	1 cut(s)	206
BspFNI	CGCG	1 cut(s)	114
BspLI	GGNNCC	1 cut(s)	186
BspT104I	TTCGAA	1 cut(s)	44
BsrBI	CCGCTC	2 cut(s)	129, 208
BsrDI	GCAATG	1 cut(s)	136
BsrI	ACTGG	1 cut(s)	55
BssMI	GATC	1 cut(s)	199
Bst4CI	ACNGT	2 cut(s)	229, 241
Bst6I	CTCTTC	1 cut(s)	89
BstBAI	YACGTR	1 cut(s)	32
BstBI	TTCGAA	1 cut(s)	44
BstDEI	CTNAG	1 cut(s)	193
BstENI	CCTNNNNNAGG	1 cut(s)	192
BstFNI	CGCG	1 cut(s)	114
BstKTI	GATC	1 cut(s)	202
BstMBI	GATC	1 cut(s)	199
BstSNI	TACGTA	1 cut(s)	32
BstUI	CGCG	1 cut(s)	114
BstV2I	GAAGAC	1 cut(s)	53
Bsu36I	CCTNAGG	1 cut(s)	193
BsuRI	GGCC	1 cut(s)	70
BtgZI	GCGATG	1 cut(s)	95
BtsIMutI	CAGTG	1 cut(s)	237
Cfr13I	GGNCC	2 cut(s)	116, 184
Csp6I	GTAC	1 cut(s)	242
CviJI	RGCY	4 cut(s)	56, 70, 176, 205
CviKI_1	RGCY	4 cut(s)	56, 70, 176, 205
CviQI	GTAC	1 cut(s)	242
DdeI	CTNAG	1 cut(s)	193
DpnI	GATC	1 cut(s)	201
DpnII	GATC	1 cut(s)	199
DrdI	GACNNNNNNGTC	1 cut(s)	227
DseDI	GACNNNNNNGTC	1 cut(s)	227
Eam1104I	CTCTTC	1 cut(s)	89
EarI	CTCTTC	1 cut(s)	89
Eco105I	TACGTA	1 cut(s)	32
Eco47I	GGWCC	2 cut(s)	116, 184
Eco57I	CTGAAG	2 cut(s)	49, 73
Eco81I	CCTNAGG	1 cut(s)	193
EcoNI	CCTNNNNNAGG	1 cut(s)	192
FaiI	YATR	2 cut(s)	9, 144
FauI	CCCGC	1 cut(s)	122
Fnu4HI	GCNGC	1 cut(s)	206
Fsp4HI	GCNGC	1 cut(s)	206
GluI	GCNGC	1 cut(s)	206
GsuI	CTGGAG	1 cut(s)	72
HaeIII	GGCC	1 cut(s)	70
HphI	GGTGA	1 cut(s)	244
Hpy166II	GTNNAC	1 cut(s)	184
Hpy188I	TCNGA	2 cut(s)	18, 280
Hpy188III	TCNNGA	3 cut(s)	91, 119, 195
Hpy8I	GTNNAC	1 cut(s)	184
HpyCH4III	ACNGT	2 cut(s)	229, 241
HpyCH4IV	ACGT	1 cut(s)	31
HpyCH4V	TGCA	3 cut(s)	11, 136, 260
HpyF3I	CTNAG	1 cut(s)	193
HpySE526I	ACGT	1 cut(s)	31
Kzo9I	GATC	1 cut(s)	199
LmnI	GCTCC	2 cut(s)	53, 126
LpnPI	CCDG	6 cut(s)	36, 52, 76, 132, 180, 201
LweI	GCATC	1 cut(s)	118
MaeII	ACGT	1 cut(s)	31
MaeIII	GTNAC	2 cut(s)	152, 235
MalI	GATC	1 cut(s)	201
MbiI	CCGCTC	2 cut(s)	129, 208
MboI	GATC	1 cut(s)	199
MboII	GAAGA	3 cut(s)	58, 89, 106
MluCI	AATT	1 cut(s)	274
MnlI	CCTC	3 cut(s)	92, 202, 211
Mva1269I	GAATGC	1 cut(s)	260
MvnI	CGCG	1 cut(s)	114
NdeII	GATC	1 cut(s)	199
NlaIV	GGNNCC	1 cut(s)	186
NmuCI	GTSAC	1 cut(s)	235
NspV	TTCGAA	1 cut(s)	44
PctI	GAATGC	1 cut(s)	260
PkrI	GCNGC	1 cut(s)	207
Ppu21I	YACGTR	1 cut(s)	32
PspN4I	GGNNCC	1 cut(s)	186
PspPI	GGNCC	2 cut(s)	116, 184
RsaI	GTAC	1 cut(s)	243
RsaNI	GTAC	1 cut(s)	242
SatI	GCNGC	1 cut(s)	206
Sau3AI	GATC	1 cut(s)	199
Sau96I	GGNCC	2 cut(s)	116, 184
SetI	ASST	4 cut(s)	34, 58, 159, 257
SfaNI	GCATC	1 cut(s)	118
SfuI	TTCGAA	1 cut(s)	44
SinI	GGWCC	2 cut(s)	116, 184
SnaBI	TACGTA	1 cut(s)	32
Sse9I	AATT	1 cut(s)	274
SsiI	CCGC	3 cut(s)	114, 129, 206
TaaI	ACNGT	2 cut(s)	229, 241
TaiI	ACGT	1 cut(s)	34
TaqI	TCGA	1 cut(s)	44
TasI	AATT	1 cut(s)	274
TatI	WGTACW	1 cut(s)	241
TauI	GCSGC	1 cut(s)	208
TscAI	CASTG	1 cut(s)	244
TseFI	GTSAC	1 cut(s)	235
Tsp45I	GTSAC	1 cut(s)	235
TspDTI	ATGAA	1 cut(s)	13
TspRI	CASTG	1 cut(s)	244
VpaK11BI	GGWCC	2 cut(s)	116, 184
XagI	CCTNNNNNAGG	1 cut(s)	192

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.