FvH4_4g30480

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0015378
Physical Location & Seq
Forward (+)
30073185 .. 30074835
1651 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g30480.t1

Sequence Viewer

Length: 690 bp
ATGAACTCGCGACATCATGCTCTTTCTACTTTCAAACTTGGGCCTGGAATGGGCGATGACCCCGCGATGATGGTGAAGGGGGAAGACATTGCTGTGAAGATTAAGGAGCTGATGCATAGTGAAAAGCTGAGAGTGAAAGCTTTGAACATTGGAGAAGAGGCTAAAAGGGTTGCTGGTTGCCTTGAGAATTTCCTCAAGGGACTCATTGAGGACAAAAGACTGGTCCAAATTAAGAAACCCATTACAGTTTGCTCTAGCTCTAGTGATCAAGGTTCTTCTTCTTTACAATCTCGCCGAGGTGTTCTTCATAGCTCGGTTGCTTTGGCTGCTTCAGCAGCTGTTCTTTTCTGGTCAGGTCCAGCTAGAGCTGGATTTCTATCGGGATCGACCGGTTTAGAATCAGTTCCAGGACCTGAGTTACCCAAAGTGGAGTTCCTTGACCGCTTCAATGAAGAAAACCGGAAATTTTATGAAGAAAATGATGCGAGATTCAAGTCATCTCCATTACTCCAGGGGCTATTAGAAAAATCCAAGCTCAACAAAGAGAAGAATAGTAGGGAAATTCAAGACAAGTACTGCTTGCGGGGAGCAGAATGGGGAGTTGGAGATTGCTCGACGGATGGAATGAAGCCCGACGAGAGAGACAAGTTCATTGCAATGTTGAAGGAGAAGGCTGGTGTCAAAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

230

Amino Acids

25.2

Weight (kDa)

8.79

Isoelectric Point (pI)

44.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015378)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G03420
fragaria_vesca FvH4_4g30480
malus_domestica MD13G1065900.v1.1 MD16G1064700.v1.1
prunus_persica Prupe.1G282200_v2.0.a1
pyrus_communis pycom13g05810 pycom16g05650
rosa_chinensis RchiOBHm_Chr4g0438851
rosa_laevigata RLG00000006325
rosa_rugosa Rorug04G0313400
rosa_samantha Rh4AG364500 Rh4BG375600 Rh4CG389700 Rh4DG370300
rosa_wichuraiana Rw0G007260 Rw0G016810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 10, 65
AciI CCGC 3 cut(s) 63, 442, 583
AclWI GGATC 1 cut(s) 391
AcsI RAATTY 3 cut(s) 187, 464, 561
AcuI CTGAAG 1 cut(s) 315
AfaI GTAC 1 cut(s) 575
AfiI CCNNNNNNNGG 1 cut(s) 50
AgeI ACCGGT 1 cut(s) 389
AgsI TTSAA 6 cut(s) 34, 145, 448, 493, 566, 664
AjnI CCWGG 3 cut(s) 43, 406, 510
AjuI GAANNNNNNNTTGG 4 cut(s) 416, 448, 585, 617
AluBI AGCT 9 cut(s) 109, 127, 140, 258, 312, 338, 362, 368, 535
AluI AGCT 9 cut(s) 109, 127, 140, 258, 312, 338, 362, 368, 535
Alw26I GTCTC 1 cut(s) 636
AlwI GGATC 1 cut(s) 391
AlwNI CAGNNNCTG 2 cut(s) 338, 413
AoxI GGCC 1 cut(s) 41
ApeKI GCWGC 2 cut(s) 326, 335
ApoI RAATTY 3 cut(s) 187, 464, 561
ArsI GACNNNNNNTTYG 2 cut(s) 207, 239
AsiGI ACCGGT 1 cut(s) 389
Asp700I GAANNNNTTC 1 cut(s) 402
AspS9I GGNCC 4 cut(s) 41, 223, 356, 410
AsuHPI GGTGA 1 cut(s) 85
AvaII GGWCC 3 cut(s) 223, 356, 410
BbsI GAAGAC 1 cut(s) 90
BbvI GCAGC 2 cut(s) 313, 347
BccI CCATC 2 cut(s) 64, 614
BciT130I CCWGG 3 cut(s) 45, 408, 512
BclI TGATCA 1 cut(s) 265
BcoDI GTCTC 1 cut(s) 636
BfaI CTAG 3 cut(s) 255, 261, 363
BisI GCNGC 2 cut(s) 327, 336
BlsI GCNGC 2 cut(s) 328, 337
BmcAI AGTACT 1 cut(s) 575
Bme1390I CCNGG 3 cut(s) 45, 408, 512
Bme18I GGWCC 3 cut(s) 223, 356, 410
BmgT120I GGNCC 4 cut(s) 41, 223, 356, 410
BmrFI CCNGG 3 cut(s) 45, 408, 512
BmsI GCATC 2 cut(s) 102, 472
BpiI GAAGAC 1 cut(s) 90
BpmI CTGGAG 1 cut(s) 494
BpuEI CTTGAG 2 cut(s) 179, 203
BsaBI GATNNNNATC 1 cut(s) 376
BsaJI CCNNGG 2 cut(s) 295, 511
BsaWI WCCGGW 2 cut(s) 389, 459
Bsc4I CCNNNNNNNGG 1 cut(s) 50
Bse118I RCCGGY 1 cut(s) 389
Bse1I ACTGG 1 cut(s) 225
Bse3DI GCAATG 3 cut(s) 87, 651, 663
Bse8I GATNNNNATC 1 cut(s) 376
BseBI CCWGG 3 cut(s) 45, 408, 512
BseDI CCNNGG 2 cut(s) 295, 511
BseGI GGATG 1 cut(s) 625
BseJI GATNNNNATC 1 cut(s) 376
BseLI CCNNNNNNNGG 1 cut(s) 50
BseMI GCAATG 3 cut(s) 87, 651, 663
BseMII CTCAG 2 cut(s) 119, 405
BseNI ACTGG 1 cut(s) 225
BseXI GCAGC 2 cut(s) 313, 347
Bsh1236I CGCG 2 cut(s) 10, 65
Bsh1285I CGRYCG 1 cut(s) 390
BshFI GGCC 1 cut(s) 43
BshTI ACCGGT 1 cut(s) 389
BsiEI CGRYCG 1 cut(s) 390
BsiSI CCGG 2 cut(s) 390, 460
BslFI GGGAC 1 cut(s) 213
BslI CCNNNNNNNGG 1 cut(s) 50
BsmAI GTCTC 1 cut(s) 636
BsmFI GGGAC 1 cut(s) 213
BsnI GGCC 1 cut(s) 43
Bsp143I GATC 2 cut(s) 265, 383
Bsp68I TCGCGA 1 cut(s) 10
BspACI CCGC 3 cut(s) 63, 442, 583
BspANI GGCC 1 cut(s) 43
BspCNI CTCAG 2 cut(s) 120, 406
BspFNI CGCG 2 cut(s) 10, 65
BspPI GGATC 1 cut(s) 391
BsrDI GCAATG 3 cut(s) 87, 651, 663
BsrFI RCCGGY 1 cut(s) 389
BsrI ACTGG 1 cut(s) 225
BssAI RCCGGY 1 cut(s) 389
BssECI CCNNGG 2 cut(s) 295, 511
BssMI GATC 2 cut(s) 265, 383
Bst2UI CCWGG 3 cut(s) 45, 408, 512
Bst4CI ACNGT 1 cut(s) 247
Bst6I CTCTTC 1 cut(s) 150
BstC8I GCNNGC 1 cut(s) 581
BstDEI CTNAG 2 cut(s) 128, 414
BstF5I GGATG 1 cut(s) 625
BstFNI CGCG 2 cut(s) 10, 65
BstKTI GATC 2 cut(s) 268, 386
BstMAI GTCTC 1 cut(s) 636
BstMBI GATC 2 cut(s) 265, 383
BstMCI CGRYCG 1 cut(s) 390
BstMWI GCNNNNNNNGC 3 cut(s) 326, 332, 335
BstNI CCWGG 3 cut(s) 45, 408, 512
BstSCI CCNGG 3 cut(s) 43, 406, 510
BstUI CGCG 2 cut(s) 10, 65
BstV1I GCAGC 2 cut(s) 313, 347
BstV2I GAAGAC 1 cut(s) 90
BsuRI GGCC 1 cut(s) 43
BtgZI GCGATG 2 cut(s) 69, 80
BtsCI GGATG 1 cut(s) 625
BtuMI TCGCGA 1 cut(s) 10
Cac8I GCNNGC 1 cut(s) 581
CaiI CAGNNNCTG 2 cut(s) 338, 413
Cfr10I RCCGGY 1 cut(s) 389
Cfr13I GGNCC 4 cut(s) 41, 223, 356, 410
Csp6I GTAC 1 cut(s) 574
CspAI ACCGGT 1 cut(s) 389
CviAII CATG 1 cut(s) 17
CviQI GTAC 1 cut(s) 574
DdeI CTNAG 2 cut(s) 128, 414
DpnI GATC 2 cut(s) 267, 385
DpnII GATC 2 cut(s) 265, 383
Eam1104I CTCTTC 1 cut(s) 150
EarI CTCTTC 1 cut(s) 150
Eco47I GGWCC 3 cut(s) 223, 356, 410
Eco57I CTGAAG 1 cut(s) 315
EcoO109I RGGNCCY 1 cut(s) 410
EcoRII CCWGG 3 cut(s) 43, 406, 510
EcoT22I ATGCAT 1 cut(s) 117
FaeI CATG 1 cut(s) 20
FaiI YATR 4 cut(s) 18, 117, 309, 471
FalI AAGNNNNNCTT 2 cut(s) 563, 595
FaqI GGGAC 1 cut(s) 213
FatI CATG 1 cut(s) 16
FauI CCCGC 2 cut(s) 70, 576
FbaI TGATCA 1 cut(s) 265
Fnu4HI GCNGC 2 cut(s) 327, 336
FokI GGATG 1 cut(s) 632
Fsp4HI GCNGC 2 cut(s) 327, 336
FspBI CTAG 3 cut(s) 255, 261, 363
GluI GCNGC 2 cut(s) 327, 336
GsuI CTGGAG 1 cut(s) 494
HaeIII GGCC 1 cut(s) 43
HapII CCGG 2 cut(s) 390, 460
Hin1II CATG 1 cut(s) 20
HindIII AAGCTT 1 cut(s) 138
HinfI GANTC 3 cut(s) 201, 398, 489
HpaII CCGG 2 cut(s) 390, 460
HphI GGTGA 1 cut(s) 85
Hpy188III TCNNGA 3 cut(s) 9, 381, 566
Hpy99I CGWCG 2 cut(s) 619, 638
HpyAV CCTTC 3 cut(s) 70, 658, 664
HpyCH4III ACNGT 1 cut(s) 247
HpyCH4V TGCA 2 cut(s) 115, 656
HpyF10VI GCNNNNNNNGC 3 cut(s) 326, 332, 335
HpyF3I CTNAG 2 cut(s) 128, 414
Hsp92II CATG 1 cut(s) 20
Ksp22I TGATCA 1 cut(s) 265
Kzo9I GATC 2 cut(s) 265, 383
LmnI GCTCC 2 cut(s) 106, 587
Lsp1109I GCAGC 2 cut(s) 313, 347
LweI GCATC 2 cut(s) 102, 472
MaeI CTAG 3 cut(s) 255, 261, 363
MaeIII GTNAC 1 cut(s) 417
MalI GATC 2 cut(s) 267, 385
MboI GATC 2 cut(s) 265, 383
MboII GAAGA 9 cut(s) 95, 109, 167, 267, 270, 296, 464, 485, 559
MluCI AATT 4 cut(s) 187, 228, 464, 561
MlyI GAGTC 1 cut(s) 195
MmeI TCCRAC 1 cut(s) 583
MnlI CCTC 4 cut(s) 151, 202, 203, 290
Mph1103I ATGCAT 1 cut(s) 117
MroXI GAANNNNTTC 1 cut(s) 402
MseI TTAA 2 cut(s) 102, 231
MslI CAYNNNNRTG 2 cut(s) 92, 656
MspA1I CMGCKG 1 cut(s) 338
MspI CCGG 2 cut(s) 390, 460
MspR9I CCNGG 3 cut(s) 45, 408, 512
MvaI CCWGG 3 cut(s) 45, 408, 512
MvnI CGCG 2 cut(s) 10, 65
MwoI GCNNNNNNNGC 3 cut(s) 326, 332, 335
NdeII GATC 2 cut(s) 265, 383
NlaIII CATG 1 cut(s) 20
NmeAIII GCCGAG 1 cut(s) 320
NruI TCGCGA 1 cut(s) 10
NsiI ATGCAT 1 cut(s) 117
PdmI GAANNNNTTC 1 cut(s) 402
PfeI GAWTC 2 cut(s) 398, 489
PfoI TCCNGGA 1 cut(s) 406
PinAI ACCGGT 1 cut(s) 389
PkrI GCNGC 2 cut(s) 328, 337
PleI GAGTC 1 cut(s) 195
PpsI GAGTC 1 cut(s) 195
PpuMI RGGWCCY 1 cut(s) 410
Psp5II RGGWCCY 1 cut(s) 410
Psp6I CCWGG 3 cut(s) 43, 406, 510
PspGI CCWGG 3 cut(s) 43, 406, 510
PspPI GGNCC 4 cut(s) 41, 223, 356, 410
PspPPI RGGWCCY 1 cut(s) 410
PstNI CAGNNNCTG 2 cut(s) 338, 413
PvuII CAGCTG 1 cut(s) 338
RruI TCGCGA 1 cut(s) 10
RsaI GTAC 1 cut(s) 575
RsaNI GTAC 1 cut(s) 574
RseI CAYNNNNRTG 2 cut(s) 92, 656
SaqAI TTAA 2 cut(s) 102, 231
SatI GCNGC 2 cut(s) 327, 336
Sau3AI GATC 2 cut(s) 265, 383
Sau96I GGNCC 4 cut(s) 41, 223, 356, 410
ScaI AGTACT 1 cut(s) 575
SchI GAGTC 1 cut(s) 195
ScrFI CCNGG 3 cut(s) 45, 408, 512
SfaNI GCATC 2 cut(s) 102, 472
SinI GGWCC 3 cut(s) 223, 356, 410
SmiMI CAYNNNNRTG 2 cut(s) 92, 656
SmlI CTYRAG 2 cut(s) 182, 194
SmoI CTYRAG 2 cut(s) 182, 194
Sse9I AATT 4 cut(s) 187, 228, 464, 561
SsiI CCGC 3 cut(s) 63, 442, 583
SspMI CTAG 3 cut(s) 255, 261, 363
StyD4I CCNGG 3 cut(s) 43, 406, 510
TaaI ACNGT 1 cut(s) 247
TaqI TCGA 2 cut(s) 386, 614
TasI AATT 4 cut(s) 187, 228, 464, 561
TatI WGTACW 1 cut(s) 573
TfiI GAWTC 2 cut(s) 398, 489
Tru1I TTAA 2 cut(s) 102, 231
Tru9I TTAA 2 cut(s) 102, 231
TseI GCWGC 2 cut(s) 326, 335
TspDTI ATGAA 6 cut(s) 17, 296, 465, 486, 640, 641
TspGWI ACGGA 1 cut(s) 632
VpaK11BI GGWCC 3 cut(s) 223, 356, 410
XapI RAATTY 3 cut(s) 187, 464, 561
XmnI GAANNNNTTC 1 cut(s) 402
XspI CTAG 3 cut(s) 255, 261, 363
ZrmI AGTACT 1 cut(s) 575
Zsp2I ATGCAT 1 cut(s) 117
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.