pycom13g05810

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0015378
Physical Location & Seq
Forward (+)
3812348 .. 3813845
1498 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g05810.3

Sequence Viewer

Length: 627 bp
ATGCCGTTTAGTGAAAAAACGTTGAAAAGCGCCAAAATATCCCTCTGCTTGTTATCTCTTTATTCGGGCTGGGGCTGTGGTATAAGCCAAACCATGGTTTCCTCTTCAGTCTCAGCTCTCTTCCGCTCCCATCCTTCCTTTCATATTTCACACACCAATTTAGATGTCTTTAAAAGACCTACCACAGTAGTAGTTTGTTCTAGTTCTTCTCCGGCGCCGACGTCTCCCCGCCGTGTTCTTCTCCAAACCTCTCTTTCTTTGGCTGCTTCAGCTGCCATTCTTCTCGGCTCAAATCCAGCCAGTGCTGGATTTCTATCAGGATCGACTGGAATTAAATCAGTTCCAGGTCCTGAGTTGCCTCAAATCGACTTCCTCAAACGCTTCAACGAAGAAAACCAGAAAAAGTATGCAGAAAATGATGCAAGATTCGGATCAAGTCCAATACTGAAGGAGCTACTAGAAAAATCCAAGCTCAACAAAGAAAAGAATAGTAAAGAAATTCAAGACAAGTACTGCATACGGGGGGCAGAGTGGGGAGTTGGAGATTGCTCGGCAGAGGGAATGACACCTGATGAGAAAGACAAGTTCATCGCAATGTTGAAGGAGAAAGCTGGCGTCAAGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

209

Amino Acids

22.49

Weight (kDa)

9.06

Isoelectric Point (pI)

44.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015378)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G03420
fragaria_vesca FvH4_4g30480
malus_domestica MD13G1065900.v1.1 MD16G1064700.v1.1
prunus_persica Prupe.1G282200_v2.0.a1
pyrus_communis pycom13g05810 pycom16g05650
rosa_chinensis RchiOBHm_Chr4g0438851
rosa_laevigata RLG00000006325
rosa_rugosa Rorug04G0313400
rosa_samantha Rh4AG364500 Rh4BG375600 Rh4CG389700 Rh4DG370300
rosa_wichuraiana Rw0G007260 Rw0G016810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 224
AccB1I GGYRCC 1 cut(s) 214
AccB7I CCANNNNNTGG 1 cut(s) 94
AccBSI CCGCTC 1 cut(s) 126
AciI CCGC 2 cut(s) 124, 229
AclI AACGTT 1 cut(s) 20
AclWI GGATC 2 cut(s) 328, 439
AcsI RAATTY 1 cut(s) 498
AcuI CTGAAG 3 cut(s) 90, 252, 467
AcyI GRCGYC 3 cut(s) 215, 221, 615
AfaI GTAC 1 cut(s) 512
AfiI CCNNNNNNNGG 1 cut(s) 94
AgsI TTSAA 4 cut(s) 25, 385, 503, 601
AjnI CCWGG 1 cut(s) 343
AluBI AGCT 5 cut(s) 116, 272, 454, 472, 611
AluI AGCT 5 cut(s) 116, 272, 454, 472, 611
Alw26I GTCTC 2 cut(s) 115, 228
AlwI GGATC 2 cut(s) 328, 439
AlwNI CAGNNNCTG 1 cut(s) 350
ApeKI GCWGC 2 cut(s) 263, 272
ApoI RAATTY 1 cut(s) 498
AspLEI GCGC 2 cut(s) 32, 217
AspS9I GGNCC 1 cut(s) 347
AvaII GGWCC 1 cut(s) 347
BanI GGYRCC 1 cut(s) 214
BbvI GCAGC 2 cut(s) 250, 259
BccI CCATC 1 cut(s) 138
BceAI ACGGC 1 cut(s) 216
BciT130I CCWGG 1 cut(s) 345
BcoDI GTCTC 2 cut(s) 115, 228
BfaI CTAG 2 cut(s) 201, 458
BfoI RGCGCY 2 cut(s) 33, 218
BisI GCNGC 2 cut(s) 264, 273
BlsI GCNGC 2 cut(s) 265, 274
BmcAI AGTACT 1 cut(s) 512
Bme1390I CCNGG 1 cut(s) 345
Bme18I GGWCC 1 cut(s) 347
BmgT120I GGNCC 1 cut(s) 347
BmiI GGNNCC 1 cut(s) 216
BmrFI CCNGG 1 cut(s) 345
BmsI GCATC 1 cut(s) 409
BsaBI GATNNNNATC 2 cut(s) 313, 430
BsaHI GRCGYC 3 cut(s) 215, 221, 615
BsaJI CCNNGG 1 cut(s) 93
Bsc4I CCNNNNNNNGG 1 cut(s) 94
Bse1I ACTGG 2 cut(s) 300, 331
Bse3DI GCAATG 1 cut(s) 600
Bse8I GATNNNNATC 2 cut(s) 313, 430
BseBI CCWGG 1 cut(s) 345
BseDI CCNNGG 1 cut(s) 93
BseGI GGATG 1 cut(s) 130
BseJI GATNNNNATC 2 cut(s) 313, 430
BseLI CCNNNNNNNGG 1 cut(s) 94
BseMI GCAATG 1 cut(s) 600
BseMII CTCAG 2 cut(s) 126, 342
BseNI ACTGG 2 cut(s) 300, 331
BseXI GCAGC 2 cut(s) 250, 259
BseYI CCCAGC 1 cut(s) 69
BshNI GGYRCC 1 cut(s) 214
BsiSI CCGG 1 cut(s) 212
BslI CCNNNNNNNGG 1 cut(s) 94
BsmAI GTCTC 2 cut(s) 115, 228
BsmBI CGTCTC 1 cut(s) 228
Bsp143I GATC 2 cut(s) 320, 431
Bsp19I CCATGG 1 cut(s) 93
BspACI CCGC 2 cut(s) 124, 229
BspCNI CTCAG 2 cut(s) 125, 343
BspLI GGNNCC 1 cut(s) 216
BspPI GGATC 2 cut(s) 328, 439
BspT107I GGYRCC 1 cut(s) 214
BsrBI CCGCTC 1 cut(s) 126
BsrDI GCAATG 1 cut(s) 600
BsrI ACTGG 2 cut(s) 300, 331
BssECI CCNNGG 1 cut(s) 93
BssMI GATC 2 cut(s) 320, 431
BssNI GRCGYC 3 cut(s) 215, 221, 615
BssT1I CCWWGG 1 cut(s) 93
Bst2UI CCWGG 1 cut(s) 345
Bst4CI ACNGT 1 cut(s) 187
Bst6I CTCTTC 2 cut(s) 109, 125
BstACI GRCGYC 3 cut(s) 215, 221, 615
BstC8I GCNNGC 1 cut(s) 613
BstDEI CTNAG 2 cut(s) 112, 351
BstDSI CCRYGG 1 cut(s) 93
BstF5I GGATG 1 cut(s) 130
BstH2I RGCGCY 2 cut(s) 33, 218
BstHHI GCGC 2 cut(s) 32, 217
BstKTI GATC 2 cut(s) 323, 434
BstMAI GTCTC 2 cut(s) 115, 228
BstMBI GATC 2 cut(s) 320, 431
BstMWI GCNNNNNNNGC 2 cut(s) 269, 272
BstNI CCWGG 1 cut(s) 345
BstSCI CCNGG 1 cut(s) 343
BstV1I GCAGC 2 cut(s) 250, 259
BtgI CCRYGG 1 cut(s) 93
BtgZI GCGATG 1 cut(s) 574
BtsCI GGATG 1 cut(s) 130
BtsIMutI CAGTG 1 cut(s) 307
Cac8I GCNNGC 1 cut(s) 613
CaiI CAGNNNCTG 1 cut(s) 350
CfoI GCGC 2 cut(s) 32, 217
Cfr13I GGNCC 1 cut(s) 347
CseI GACGC 1 cut(s) 604
Csp6I GTAC 1 cut(s) 511
CviAII CATG 1 cut(s) 94
CviQI GTAC 1 cut(s) 511
DdeI CTNAG 2 cut(s) 112, 351
DinI GGCGCC 1 cut(s) 216
DpnI GATC 2 cut(s) 322, 433
DpnII GATC 2 cut(s) 320, 431
DraI TTTAAA 1 cut(s) 172
Eam1104I CTCTTC 2 cut(s) 109, 125
EarI CTCTTC 2 cut(s) 109, 125
Eco130I CCWWGG 1 cut(s) 93
Eco47I GGWCC 1 cut(s) 347
Eco57I CTGAAG 3 cut(s) 90, 252, 467
EcoO109I RGGNCCY 1 cut(s) 347
EcoRII CCWGG 1 cut(s) 343
EcoT14I CCWWGG 1 cut(s) 93
EgeI GGCGCC 1 cut(s) 216
EheI GGCGCC 1 cut(s) 216
ErhI CCWWGG 1 cut(s) 93
Esp3I CGTCTC 1 cut(s) 228
FaeI CATG 1 cut(s) 97
FaiI YATR 5 cut(s) 83, 95, 144, 408, 518
FatI CATG 1 cut(s) 93
FauI CCCGC 1 cut(s) 236
Fnu4HI GCNGC 2 cut(s) 264, 273
FokI GGATG 1 cut(s) 117
Fsp4HI GCNGC 2 cut(s) 264, 273
FspBI CTAG 2 cut(s) 201, 458
GlaI GCGC 2 cut(s) 31, 216
GluI GCNGC 2 cut(s) 264, 273
GsaI CCCAGC 1 cut(s) 73
HaeII RGCGCY 2 cut(s) 33, 218
HapII CCGG 1 cut(s) 212
HgaI GACGC 1 cut(s) 604
HhaI GCGC 2 cut(s) 32, 217
Hin1I GRCGYC 3 cut(s) 215, 221, 615
Hin1II CATG 1 cut(s) 97
Hin6I GCGC 2 cut(s) 30, 215
HinP1I GCGC 2 cut(s) 30, 215
HinfI GANTC 1 cut(s) 426
HpaII CCGG 1 cut(s) 212
Hpy188I TCNGA 1 cut(s) 431
Hpy188III TCNNGA 3 cut(s) 318, 350, 503
Hpy99I CGWCG 1 cut(s) 223
HpyAV CCTTC 3 cut(s) 144, 442, 595
HpyCH4III ACNGT 1 cut(s) 187
HpyCH4IV ACGT 2 cut(s) 20, 221
HpyCH4V TGCA 3 cut(s) 410, 422, 516
HpyF10VI GCNNNNNNNGC 2 cut(s) 269, 272
HpyF3I CTNAG 2 cut(s) 112, 351
HpySE526I ACGT 2 cut(s) 20, 221
Hsp92I GRCGYC 3 cut(s) 215, 221, 615
Hsp92II CATG 1 cut(s) 97
HspAI GCGC 2 cut(s) 30, 215
KasI GGCGCC 1 cut(s) 214
Kzo9I GATC 2 cut(s) 320, 431
LmnI GCTCC 2 cut(s) 131, 451
Lsp1109I GCAGC 2 cut(s) 250, 259
LweI GCATC 1 cut(s) 409
MaeI CTAG 2 cut(s) 201, 458
MaeII ACGT 2 cut(s) 20, 221
MalI GATC 2 cut(s) 322, 433
MbiI CCGCTC 1 cut(s) 126
MboI GATC 2 cut(s) 320, 431
MboII GAAGA 6 cut(s) 96, 112, 198, 230, 272, 401
MluCI AATT 3 cut(s) 157, 330, 498
Mly113I GGCGCC 1 cut(s) 215
MmeI TCCRAC 1 cut(s) 520
MnlI CCTC 6 cut(s) 53, 112, 259, 369, 383, 550
MseI TTAA 2 cut(s) 171, 333
MslI CAYNNNNRTG 1 cut(s) 593
MspA1I CMGCKG 1 cut(s) 272
MspI CCGG 1 cut(s) 212
MspR9I CCNGG 1 cut(s) 345
MvaI CCWGG 1 cut(s) 345
MwoI GCNNNNNNNGC 2 cut(s) 269, 272
NarI GGCGCC 1 cut(s) 215
NcoI CCATGG 1 cut(s) 93
NdeII GATC 2 cut(s) 320, 431
NlaIII CATG 1 cut(s) 97
NlaIV GGNNCC 1 cut(s) 216
NmeAIII GCCGAG 2 cut(s) 264, 530
PfeI GAWTC 1 cut(s) 426
PflMI CCANNNNNTGG 1 cut(s) 94
PkrI GCNGC 2 cut(s) 265, 274
PluTI GGCGCC 1 cut(s) 218
PpuMI RGGWCCY 1 cut(s) 347
Psp1406I AACGTT 1 cut(s) 20
Psp5II RGGWCCY 1 cut(s) 347
Psp6I CCWGG 1 cut(s) 343
PspFI CCCAGC 1 cut(s) 69
PspGI CCWGG 1 cut(s) 343
PspN4I GGNNCC 1 cut(s) 216
PspPI GGNCC 1 cut(s) 347
PspPPI RGGWCCY 1 cut(s) 347
PstNI CAGNNNCTG 1 cut(s) 350
PvuII CAGCTG 1 cut(s) 272
RsaI GTAC 1 cut(s) 512
RsaNI GTAC 1 cut(s) 511
RseI CAYNNNNRTG 1 cut(s) 593
SaqAI TTAA 2 cut(s) 171, 333
SatI GCNGC 2 cut(s) 264, 273
Sau3AI GATC 2 cut(s) 320, 431
Sau96I GGNCC 1 cut(s) 347
ScaI AGTACT 1 cut(s) 512
ScrFI CCNGG 1 cut(s) 345
SfaNI GCATC 1 cut(s) 409
SfoI GGCGCC 1 cut(s) 216
SinI GGWCC 1 cut(s) 347
SmiMI CAYNNNNRTG 1 cut(s) 593
Sse9I AATT 3 cut(s) 157, 330, 498
SsiI CCGC 2 cut(s) 124, 229
SspDI GGCGCC 1 cut(s) 214
SspMI CTAG 2 cut(s) 201, 458
StyD4I CCNGG 1 cut(s) 343
StyI CCWWGG 1 cut(s) 93
TaaI ACNGT 1 cut(s) 187
TaiI ACGT 2 cut(s) 23, 224
TaqI TCGA 2 cut(s) 323, 366
TasI AATT 3 cut(s) 157, 330, 498
TatI WGTACW 1 cut(s) 510
TfiI GAWTC 1 cut(s) 426
Tru1I TTAA 2 cut(s) 171, 333
Tru9I TTAA 2 cut(s) 171, 333
TscAI CASTG 1 cut(s) 307
TseI GCWGC 2 cut(s) 263, 272
TspDTI ATGAA 2 cut(s) 131, 577
TspRI CASTG 1 cut(s) 307
Van91I CCANNNNNTGG 1 cut(s) 94
VpaK11BI GGWCC 1 cut(s) 347
XapI RAATTY 1 cut(s) 498
XspI CTAG 2 cut(s) 201, 458
ZraI GACGTC 1 cut(s) 222
ZrmI AGTACT 1 cut(s) 512
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.