RLG00000006325

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0015378
Physical Location & Seq
Reverse (-)
6265585 .. 6266981
1397 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000006325

Sequence Viewer

Length: 654 bp
ATGATATTTGTTGTGGTTGATATGAACCATAAAAATATAATTATCTTTGTTGAGCTTGGGCTGTGGTATAGTGAGGGGAACCGCACCATGGTTTCCTCTTCTATCTCAGCTCTCTCTCATTCTTTCTCCCATGTTTCATGTACTAATTTGGATGTGTGTGAAAAACCCAGTAACCCTCTTAAAAAACTAGTCCATATTAAGAGACGCAGTGTAGTTTGTTCTAGTTCTAGTGATCAAGGTTCTTCTTTACAATCTCGCCGAGGTGTTCTTCATAGCTCAGTTGCTTTGGCTGCTTCAGCAGCTGTTCTTTTCTGGTCAAGTCCAGCTAGAGCTGGATTTCTATCGGGATCGACCGGGATAGAATCAATTCCTGGTCCTGAATTACCCAAAGTGGAGTTCCTTGACCGCTTCAATGAAGAAAACCAGAAAAAGTATGCAGAAAATGATGCGAGATTCAAATCATCTCCATTACTCCAGGGGCTACTAGAAAAATCCAAGCTCAACAAAGAGAAGAATAGTAGGGAAACTCAAGACAAGTACTGCCTACGCGGAGCAGAATGGGGAGTTGGAGATTGCTCAGCCGAGGGAATGAAGCCCGACGAGAGAGACAAGTTCATTGCAATGTTGAAGGAGAGGGCTGGTGTCAAAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

218

Amino Acids

23.97

Weight (kDa)

8.77

Isoelectric Point (pI)

48.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015378)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G03420
fragaria_vesca FvH4_4g30480
malus_domestica MD13G1065900.v1.1 MD16G1064700.v1.1
prunus_persica Prupe.1G282200_v2.0.a1
pyrus_communis pycom13g05810 pycom16g05650
rosa_chinensis RchiOBHm_Chr4g0438851
rosa_laevigata RLG00000006325
rosa_rugosa Rorug04G0313400
rosa_samantha Rh4AG364500 Rh4BG375600 Rh4CG389700 Rh4DG370300
rosa_wichuraiana Rw0G007260 Rw0G016810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 549
AciI CCGC 3 cut(s) 82, 406, 549
AclWI GGATC 1 cut(s) 355
AcuI CTGAAG 1 cut(s) 279
AfaI GTAC 2 cut(s) 142, 539
AfiI CCNNNNNNNGG 1 cut(s) 88
AgsI TTSAA 3 cut(s) 412, 457, 628
AhlI ACTAGT 1 cut(s) 187
AjnI CCWGG 2 cut(s) 370, 474
AjuI GAANNNNNNNTTGG 4 cut(s) 380, 412, 549, 581
AluBI AGCT 7 cut(s) 55, 110, 276, 302, 326, 332, 499
AluI AGCT 7 cut(s) 55, 110, 276, 302, 326, 332, 499
Alw26I GTCTC 2 cut(s) 196, 600
AlwI GGATC 1 cut(s) 355
AlwNI CAGNNNCTG 1 cut(s) 302
ApeKI GCWGC 2 cut(s) 290, 299
Asp700I GAANNNNTTC 1 cut(s) 366
AspS9I GGNCC 1 cut(s) 374
AsuC2I CCSGG 1 cut(s) 355
AvaII GGWCC 1 cut(s) 374
BbvI GCAGC 2 cut(s) 277, 311
BciT130I CCWGG 2 cut(s) 372, 476
BclI TGATCA 1 cut(s) 232
BcnI CCSGG 1 cut(s) 355
BcoDI GTCTC 2 cut(s) 196, 600
BcuI ACTAGT 1 cut(s) 187
BfaI CTAG 5 cut(s) 188, 222, 228, 327, 485
BisI GCNGC 2 cut(s) 291, 300
BlpI GCTNAGC 1 cut(s) 577
BlsI GCNGC 2 cut(s) 292, 301
BmcAI AGTACT 1 cut(s) 539
Bme1390I CCNGG 3 cut(s) 355, 372, 476
Bme18I GGWCC 1 cut(s) 374
BmgT120I GGNCC 1 cut(s) 374
BmiI GGNNCC 1 cut(s) 80
BmrFI CCNGG 3 cut(s) 355, 372, 476
BmrI ACTGGG 1 cut(s) 162
BmsI GCATC 1 cut(s) 436
BmuI ACTGGG 1 cut(s) 162
BpmI CTGGAG 1 cut(s) 458
Bpu1102I GCTNAGC 1 cut(s) 577
BpuEI CTTGAG 1 cut(s) 513
BpuMI CCSGG 1 cut(s) 355
BsaBI GATNNNNATC 2 cut(s) 340, 457
BsaJI CCNNGG 4 cut(s) 87, 259, 475, 582
Bsc4I CCNNNNNNNGG 1 cut(s) 88
Bse1I ACTGG 1 cut(s) 168
Bse3DI GCAATG 2 cut(s) 615, 627
Bse8I GATNNNNATC 2 cut(s) 340, 457
BseBI CCWGG 2 cut(s) 372, 476
BseDI CCNNGG 4 cut(s) 87, 259, 475, 582
BseGI GGATG 1 cut(s) 157
BseJI GATNNNNATC 2 cut(s) 340, 457
BseLI CCNNNNNNNGG 1 cut(s) 88
BseMI GCAATG 2 cut(s) 615, 627
BseMII CTCAG 3 cut(s) 120, 291, 591
BseNI ACTGG 1 cut(s) 168
BseXI GCAGC 2 cut(s) 277, 311
Bsh1236I CGCG 1 cut(s) 549
Bsh1285I CGRYCG 1 cut(s) 354
BsiEI CGRYCG 1 cut(s) 354
BsiSI CCGG 1 cut(s) 354
BslI CCNNNNNNNGG 1 cut(s) 88
BsmAI GTCTC 2 cut(s) 196, 600
BsmBI CGTCTC 1 cut(s) 196
Bsp143I GATC 2 cut(s) 232, 347
Bsp1720I GCTNAGC 1 cut(s) 577
Bsp19I CCATGG 1 cut(s) 87
BspACI CCGC 3 cut(s) 82, 406, 549
BspCNI CTCAG 3 cut(s) 119, 290, 590
BspFNI CGCG 1 cut(s) 549
BspLI GGNNCC 1 cut(s) 80
BspPI GGATC 1 cut(s) 355
BsrDI GCAATG 2 cut(s) 615, 627
BsrI ACTGG 1 cut(s) 168
BssECI CCNNGG 4 cut(s) 87, 259, 475, 582
BssMI GATC 2 cut(s) 232, 347
BssT1I CCWWGG 1 cut(s) 87
Bst2UI CCWGG 2 cut(s) 372, 476
Bst6I CTCTTC 1 cut(s) 103
BstDEI CTNAG 3 cut(s) 106, 277, 577
BstDSI CCRYGG 1 cut(s) 87
BstF5I GGATG 1 cut(s) 157
BstFNI CGCG 1 cut(s) 549
BstKTI GATC 2 cut(s) 235, 350
BstMAI GTCTC 2 cut(s) 196, 600
BstMBI GATC 2 cut(s) 232, 347
BstMCI CGRYCG 1 cut(s) 354
BstMWI GCNNNNNNNGC 3 cut(s) 290, 296, 299
BstNI CCWGG 2 cut(s) 372, 476
BstSCI CCNGG 3 cut(s) 353, 370, 474
BstUI CGCG 1 cut(s) 549
BstV1I GCAGC 2 cut(s) 277, 311
BtgI CCRYGG 1 cut(s) 87
BtsCI GGATG 1 cut(s) 157
BtsI GCAGTG 1 cut(s) 214
BtsIMutI CAGTG 1 cut(s) 214
CaiI CAGNNNCTG 1 cut(s) 302
Cfr13I GGNCC 1 cut(s) 374
CseI GACGC 1 cut(s) 213
Csp6I GTAC 2 cut(s) 141, 538
CviAII CATG 3 cut(s) 88, 131, 138
CviQI GTAC 2 cut(s) 141, 538
DdeI CTNAG 3 cut(s) 106, 277, 577
DpnI GATC 2 cut(s) 234, 349
DpnII GATC 2 cut(s) 232, 347
Eam1104I CTCTTC 1 cut(s) 103
EarI CTCTTC 1 cut(s) 103
Eco130I CCWWGG 1 cut(s) 87
Eco47I GGWCC 1 cut(s) 374
Eco57I CTGAAG 1 cut(s) 279
EcoRII CCWGG 2 cut(s) 370, 474
EcoT14I CCWWGG 1 cut(s) 87
ErhI CCWWGG 1 cut(s) 87
Esp3I CGTCTC 1 cut(s) 196
FaeI CATG 3 cut(s) 91, 134, 141
FatI CATG 3 cut(s) 87, 130, 137
FbaI TGATCA 1 cut(s) 232
Fnu4HI GCNGC 2 cut(s) 291, 300
FokI GGATG 1 cut(s) 164
Fsp4HI GCNGC 2 cut(s) 291, 300
FspBI CTAG 5 cut(s) 188, 222, 228, 327, 485
GluI GCNGC 2 cut(s) 291, 300
GsuI CTGGAG 1 cut(s) 458
HapII CCGG 1 cut(s) 354
HgaI GACGC 1 cut(s) 213
Hin1II CATG 3 cut(s) 91, 134, 141
HinfI GANTC 2 cut(s) 362, 453
HpaII CCGG 1 cut(s) 354
Hpy188III TCNNGA 3 cut(s) 345, 377, 530
Hpy99I CGWCG 1 cut(s) 602
HpyAV CCTTC 1 cut(s) 622
HpyCH4V TGCA 2 cut(s) 437, 620
HpyF10VI GCNNNNNNNGC 3 cut(s) 290, 296, 299
HpyF3I CTNAG 3 cut(s) 106, 277, 577
Hsp92II CATG 3 cut(s) 91, 134, 141
Ksp22I TGATCA 1 cut(s) 232
Kzo9I GATC 2 cut(s) 232, 347
LmnI GCTCC 1 cut(s) 551
Lsp1109I GCAGC 2 cut(s) 277, 311
LweI GCATC 1 cut(s) 436
MaeI CTAG 5 cut(s) 188, 222, 228, 327, 485
MaeIII GTNAC 1 cut(s) 170
MalI GATC 2 cut(s) 234, 349
MboI GATC 2 cut(s) 232, 347
MboII GAAGA 5 cut(s) 90, 234, 260, 428, 523
MluCI AATT 4 cut(s) 39, 145, 366, 380
MmeI TCCRAC 1 cut(s) 547
MnlI CCTC 6 cut(s) 67, 106, 186, 254, 577, 627
MroXI GAANNNNTTC 1 cut(s) 366
MseI TTAA 2 cut(s) 180, 198
MslI CAYNNNNRTG 1 cut(s) 620
MspA1I CMGCKG 1 cut(s) 302
MspI CCGG 1 cut(s) 354
MspR9I CCNGG 3 cut(s) 355, 372, 476
MvaI CCWGG 2 cut(s) 372, 476
MvnI CGCG 1 cut(s) 549
MwoI GCNNNNNNNGC 3 cut(s) 290, 296, 299
NciI CCSGG 1 cut(s) 355
NcoI CCATGG 1 cut(s) 87
NdeII GATC 2 cut(s) 232, 347
NlaIII CATG 3 cut(s) 91, 134, 141
NlaIV GGNNCC 1 cut(s) 80
NmeAIII GCCGAG 2 cut(s) 284, 607
PdmI GAANNNNTTC 1 cut(s) 366
PfeI GAWTC 2 cut(s) 362, 453
PkrI GCNGC 2 cut(s) 292, 301
Psp6I CCWGG 2 cut(s) 370, 474
PspGI CCWGG 2 cut(s) 370, 474
PspN4I GGNNCC 1 cut(s) 80
PspPI GGNCC 1 cut(s) 374
PstNI CAGNNNCTG 1 cut(s) 302
PvuII CAGCTG 1 cut(s) 302
RsaI GTAC 2 cut(s) 142, 539
RsaNI GTAC 2 cut(s) 141, 538
RseI CAYNNNNRTG 1 cut(s) 620
SaqAI TTAA 2 cut(s) 180, 198
SatI GCNGC 2 cut(s) 291, 300
Sau3AI GATC 2 cut(s) 232, 347
Sau96I GGNCC 1 cut(s) 374
ScaI AGTACT 1 cut(s) 539
ScrFI CCNGG 3 cut(s) 355, 372, 476
SetI ASST 9 cut(s) 57, 112, 241, 265, 278, 304, 328, 334, 501
SfaNI GCATC 1 cut(s) 436
SinI GGWCC 1 cut(s) 374
SmiMI CAYNNNNRTG 1 cut(s) 620
SmlI CTYRAG 1 cut(s) 528
SmoI CTYRAG 1 cut(s) 528
SpeI ACTAGT 1 cut(s) 187
Sse9I AATT 4 cut(s) 39, 145, 366, 380
SsiI CCGC 3 cut(s) 82, 406, 549
SspMI CTAG 5 cut(s) 188, 222, 228, 327, 485
StyD4I CCNGG 3 cut(s) 353, 370, 474
StyI CCWWGG 1 cut(s) 87
TaqI TCGA 1 cut(s) 350
TasI AATT 4 cut(s) 39, 145, 366, 380
TatI WGTACW 2 cut(s) 140, 537
TfiI GAWTC 2 cut(s) 362, 453
Tru1I TTAA 2 cut(s) 180, 198
Tru9I TTAA 2 cut(s) 180, 198
TscAI CASTG 1 cut(s) 214
TseI GCWGC 2 cut(s) 290, 299
TspDTI ATGAA 6 cut(s) 38, 126, 260, 429, 604, 605
TspRI CASTG 1 cut(s) 214
VpaK11BI GGWCC 1 cut(s) 374
XmnI GAANNNNTTC 1 cut(s) 366
XspI CTAG 5 cut(s) 188, 222, 228, 327, 485
ZrmI AGTACT 1 cut(s) 539
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.