AT2G03870

LSM domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0008526
Physical Location & Seq
Forward (+)
1179971 .. 1181512
1542 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G03870.2

Sequence Viewer

Length: 300 bp
ATGTCTGGAAGAAAAGAAACGGTTTTAGATTTGGCCAAGTTTGTAGATAAGGGTGTGCAAGTTAAGCTCACTGGTGGTAGACAAGTGACTGGAACTCTTAAAGGCTATGACCAATTGCTTAATCTTGTTCTTGATGAAGCAGTCGAGTTCGTTCGAGATCATGATGATCCTTTGAAGACTACGGATCAGACAAGACGCCTTGGTTTGATTGTTTGCCGTGGAACAGCGGTGATGCTTGTCTCACCAACCGATGGCACCGAAGAAATCGCTAACCCGTTCGTTACTGCAGAGGCTGTCTAA

Protein Analysis

99

Amino Acids

10.77

Weight (kDa)

5.04

Isoelectric Point (pI)

21.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LSM PF01423 10 - 82 6.1e-21 LSM domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 254
AccB7I CCANNNNNTGG 1 cut(s) 251
AccI GTMKAC 1 cut(s) 79
AciI CCGC 1 cut(s) 227
AclWI GGATC 2 cut(s) 161, 192
AcoI YGGCCR 1 cut(s) 33
AcyI GRCGYC 1 cut(s) 196
AfiI CCNNNNNNNGG 1 cut(s) 251
AgsI TTSAA 1 cut(s) 175
AluBI AGCT 1 cut(s) 67
AluI AGCT 1 cut(s) 67
Alw26I GTCTC 1 cut(s) 244
AlwI GGATC 2 cut(s) 161, 192
AlwNI CAGNNNCTG 1 cut(s) 293
AoxI GGCC 1 cut(s) 33
AsuHPI GGTGA 2 cut(s) 234, 241
BalI TGGCCA 1 cut(s) 35
BanI GGYRCC 1 cut(s) 254
BbsI GAAGAC 1 cut(s) 182
BccI CCATC 1 cut(s) 245
BceAI ACGGC 1 cut(s) 201
BcoDI GTCTC 1 cut(s) 244
BfmI CTRYAG 1 cut(s) 285
BmiI GGNNCC 1 cut(s) 256
BmsI GCATC 1 cut(s) 222
BpiI GAAGAC 1 cut(s) 182
BsaHI GRCGYC 1 cut(s) 196
BsaJI CCNNGG 2 cut(s) 199, 217
Bsc4I CCNNNNNNNGG 1 cut(s) 251
Bse1I ACTGG 2 cut(s) 76, 94
BseDI CCNNGG 2 cut(s) 199, 217
BseLI CCNNNNNNNGG 1 cut(s) 251
BseNI ACTGG 2 cut(s) 76, 94
BshFI GGCC 1 cut(s) 35
BshNI GGYRCC 1 cut(s) 254
BslI CCNNNNNNNGG 1 cut(s) 251
BsmAI GTCTC 1 cut(s) 244
BsnI GGCC 1 cut(s) 35
Bsp143I GATC 3 cut(s) 157, 166, 184
BspACI CCGC 1 cut(s) 227
BspANI GGCC 1 cut(s) 35
BspHI TCATGA 1 cut(s) 160
BspLI GGNNCC 1 cut(s) 256
BspMAI CTGCAG 1 cut(s) 289
BspPI GGATC 2 cut(s) 161, 192
BspT107I GGYRCC 1 cut(s) 254
BsrI ACTGG 2 cut(s) 76, 94
BssECI CCNNGG 2 cut(s) 199, 217
BssMI GATC 3 cut(s) 157, 166, 184
BssNI GRCGYC 1 cut(s) 196
BssT1I CCWWGG 1 cut(s) 199
Bst4CI ACNGT 1 cut(s) 22
BstACI GRCGYC 1 cut(s) 196
BstDSI CCRYGG 1 cut(s) 217
BstKTI GATC 3 cut(s) 160, 169, 187
BstMAI GTCTC 1 cut(s) 244
BstMBI GATC 3 cut(s) 157, 166, 184
BstMWI GCNNNNNNNGC 1 cut(s) 64
BstSFI CTRYAG 1 cut(s) 285
BstV2I GAAGAC 1 cut(s) 182
BsuRI GGCC 1 cut(s) 35
BtgI CCRYGG 1 cut(s) 217
BtsIMutI CAGTG 1 cut(s) 69
CaiI CAGNNNCTG 1 cut(s) 293
CciI TCATGA 1 cut(s) 160
CseI GACGC 1 cut(s) 204
CviAII CATG 1 cut(s) 161
CviJI RGCY 4 cut(s) 35, 67, 105, 293
CviKI_1 RGCY 4 cut(s) 35, 67, 105, 293
DpnI GATC 3 cut(s) 159, 168, 186
DpnII GATC 3 cut(s) 157, 166, 184
EaeI YGGCCR 1 cut(s) 33
Eco130I CCWWGG 1 cut(s) 199
EcoT14I CCWWGG 1 cut(s) 199
ErhI CCWWGG 1 cut(s) 199
FaeI CATG 1 cut(s) 164
FaiI YATR 2 cut(s) 108, 162
FatI CATG 1 cut(s) 160
FblI GTMKAC 1 cut(s) 79
HaeIII GGCC 1 cut(s) 35
HgaI GACGC 1 cut(s) 204
Hin1I GRCGYC 1 cut(s) 196
Hin1II CATG 1 cut(s) 164
HphI GGTGA 2 cut(s) 234, 241
Hpy166II GTNNAC 1 cut(s) 80
Hpy188I TCNGA 1 cut(s) 189
Hpy188III TCNNGA 4 cut(s) 6, 131, 155, 161
Hpy8I GTNNAC 1 cut(s) 80
HpyCH4III ACNGT 1 cut(s) 22
HpyCH4V TGCA 2 cut(s) 58, 287
HpyF10VI GCNNNNNNNGC 1 cut(s) 64
Hsp92I GRCGYC 1 cut(s) 196
Hsp92II CATG 1 cut(s) 164
Kzo9I GATC 3 cut(s) 157, 166, 184
LpnPI CCDG 2 cut(s) 57, 75
LweI GCATC 1 cut(s) 222
MaeIII GTNAC 2 cut(s) 85, 280
MalI GATC 3 cut(s) 159, 168, 186
MboI GATC 3 cut(s) 157, 166, 184
MboII GAAGA 3 cut(s) 21, 187, 272
MfeI CAATTG 1 cut(s) 113
MlsI TGGCCA 1 cut(s) 35
MluCI AATT 1 cut(s) 113
MluNI TGGCCA 1 cut(s) 35
MnlI CCTC 1 cut(s) 283
Mox20I TGGCCA 1 cut(s) 35
MscI TGGCCA 1 cut(s) 35
MseI TTAA 3 cut(s) 63, 99, 120
Msp20I TGGCCA 1 cut(s) 35
MspA1I CMGCKG 1 cut(s) 227
MunI CAATTG 1 cut(s) 113
MwoI GCNNNNNNNGC 1 cut(s) 64
NdeII GATC 3 cut(s) 157, 166, 184
NlaIII CATG 1 cut(s) 164
NlaIV GGNNCC 1 cut(s) 256
NmuCI GTSAC 1 cut(s) 85
PagI TCATGA 1 cut(s) 160
PflMI CCANNNNNTGG 1 cut(s) 251
PspN4I GGNNCC 1 cut(s) 256
PstI CTGCAG 1 cut(s) 289
PstNI CAGNNNCTG 1 cut(s) 293
SaqAI TTAA 3 cut(s) 63, 99, 120
Sau3AI GATC 3 cut(s) 157, 166, 184
SetI ASST 1 cut(s) 69
SfaNI GCATC 1 cut(s) 222
SfcI CTRYAG 1 cut(s) 285
Sse9I AATT 1 cut(s) 113
SsiI CCGC 1 cut(s) 227
StyI CCWWGG 1 cut(s) 199
TaaI ACNGT 1 cut(s) 22
TaqI TCGA 2 cut(s) 144, 154
TasI AATT 1 cut(s) 113
Tru1I TTAA 3 cut(s) 63, 99, 120
Tru9I TTAA 3 cut(s) 63, 99, 120
TscAI CASTG 1 cut(s) 76
TseFI GTSAC 1 cut(s) 85
Tsp45I GTSAC 1 cut(s) 85
TspDTI ATGAA 1 cut(s) 150
TspGWI ACGGA 1 cut(s) 197
TspRI CASTG 1 cut(s) 76
Van91I CCANNNNNTGG 1 cut(s) 251
XmiI GTMKAC 1 cut(s) 79
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.