Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0008526

Physical Location & Seq

Genomic Coordinates Forward (+)

829769 .. 832042

Gene Structure 2274 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0003900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGTGGGAGACAAGAGGGTTGAGCTTCATGAGGAGAGCGAGGGGCTGGCCGATGGGGGACGGACTCCAAGGAGTAGGCGCGGCGGGCGACGCGGTGGATGTCAGAGTAATTGGACTAATGACTTTTGGACCTGGGCATTCCGTGGATAAATTGTCAGAGGTGTTGCTGCATGAAAAACGTTCACATATGTTAGGCAAATGCGACAAGCTTGGGAATTGGACACAAATAGGAAGCTCCTTGATGAATCTCAGGGCCTCAGAGTACAGTGCACTGCGAGCATCTGCTGTGAAAATGCGTGGCCTTTTTGAAAGGCTTCGGAGCTATGTTAATGCCCAGGGAATGACTGGTTTTGTTGAGTCTTTGCACAGTTTAGCACAATCTCTGGGAAAATACAGACCCCAATCTTCAACATGTCAAGGTCCATTGGCAGCTACACCAAAGACTGGAAACTCTAAGTTACAAGCATGGTTAATGCAATGTGGACGCGTTTATGTTTTCCGGCTTTATGCAGTTATAGCCACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0005688 GO:0005689 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0030532 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071004 GO:0071010 GO:0071013 GO:0071704 GO:0090304 GO:0097525 GO:0097526 GO:0120114 GO:1901360 GO:1902494 GO:1990726 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03018 ko03040 map03018 map03040

Pfam Domains

Protein Families

LSM

Protein Analysis

174

Amino Acids

19.08

Weight (kDa)

10.08

Isoelectric Point (pI)

30.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008526)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G03870 AT2G03870
fragaria_vesca	FvH4_7g00800 FvH4_7g00800
malus_domestica	MD02G1314900.v1.1 MD07G1007200.v1.1
prunus_persica	Prupe.2G010100_v2.0.a1 Prupe.2G010100_v2.0.a1 Prupe.2G010100_v2.0.a1
pyrus_communis	pycom02g26390 pycom07g00570
rosa_chinensis	RchiOBHm_Chr1g0314961
rosa_multiflora	Rmu_sc0005168.1_g000014
rosa_roxburghii	Rroxscaffold_4G00331640
rosa_rugosa	Rorug01G0003600 Rorug01G0003700 Rorug01G0003800 Rorug01G0003900
rosa_samantha	Rh1AG014300 Rh1BG006100 Rh1CG012400 Rh1DG007900
rosa_wichuraiana	Rw1G000680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	443
AccII	CGCG	3 cut(s)	80, 92, 486
AciI	CCGC	3 cut(s)	80, 83, 92
AclI	AACGTT	1 cut(s)	178
AcoI	YGGCCR	1 cut(s)	47
AfaI	GTAC	1 cut(s)	263
AfiI	CCNNNNNNNGG	1 cut(s)	443
AflIII	ACRYGT	2 cut(s)	410, 484
AgsI	TTSAA	2 cut(s)	308, 408
AjnI	CCWGG	2 cut(s)	130, 333
AluBI	AGCT	5 cut(s)	24, 208, 234, 321, 431
AluI	AGCT	5 cut(s)	24, 208, 234, 321, 431
Alw21I	GWGCWC	1 cut(s)	271
Alw26I	GTCTC	1 cut(s)	2
Alw44I	GTGCAC	1 cut(s)	267
AoxI	GGCC	3 cut(s)	47, 252, 298
ApaLI	GTGCAC	1 cut(s)	267
ApeKI	GCWGC	2 cut(s)	166, 428
Asp700I	GAANNNNTTC	1 cut(s)	312
AspLEI	GCGC	1 cut(s)	80
AspS9I	GGNCC	3 cut(s)	128, 252, 419
AvaII	GGWCC	2 cut(s)	128, 419
BaeGI	GKGCMC	1 cut(s)	271
Bbv12I	GWGCWC	1 cut(s)	271
BbvI	GCAGC	2 cut(s)	153, 440
BccI	CCATC	1 cut(s)	46
BciT130I	CCWGG	2 cut(s)	132, 335
BcoDI	GTCTC	1 cut(s)	2
BisI	GCNGC	3 cut(s)	81, 167, 429
BlsI	GCNGC	3 cut(s)	82, 168, 430
Bme1390I	CCNGG	2 cut(s)	132, 335
Bme18I	GGWCC	2 cut(s)	128, 419
BmgT120I	GGNCC	3 cut(s)	128, 252, 419
BmrFI	CCNGG	2 cut(s)	132, 335
BmsI	GCATC	1 cut(s)	287
BsaJI	CCNNGG	5 cut(s)	67, 131, 141, 333, 334
Bsc4I	CCNNNNNNNGG	1 cut(s)	443
Bse1I	ACTGG	2 cut(s)	349, 448
Bse3DI	GCAATG	1 cut(s)	482
BseBI	CCWGG	2 cut(s)	132, 335
BseDI	CCNNGG	5 cut(s)	67, 131, 141, 333, 334
BseGI	GGATG	1 cut(s)	103
BseLI	CCNNNNNNNGG	1 cut(s)	443
BseMI	GCAATG	1 cut(s)	482
BseMII	CTCAG	2 cut(s)	262, 270
BseNI	ACTGG	2 cut(s)	349, 448
BseRI	GAGGAG	1 cut(s)	46
BseSI	GKGCMC	1 cut(s)	271
BseXI	GCAGC	2 cut(s)	153, 440
Bsh1236I	CGCG	3 cut(s)	80, 92, 486
BshFI	GGCC	3 cut(s)	49, 254, 300
BsiHKAI	GWGCWC	1 cut(s)	271
BsiSI	CCGG	1 cut(s)	499
BslFI	GGGAC	1 cut(s)	71
BslI	CCNNNNNNNGG	1 cut(s)	443
BsmAI	GTCTC	1 cut(s)	2
BsmFI	GGGAC	1 cut(s)	71
BsmI	GAATGC	1 cut(s)	136
BsnI	GGCC	3 cut(s)	49, 254, 300
Bsp1286I	GDGCHC	1 cut(s)	271
BspACI	CCGC	3 cut(s)	80, 83, 92
BspANI	GGCC	3 cut(s)	49, 254, 300
BspCNI	CTCAG	2 cut(s)	261, 269
BspFNI	CGCG	3 cut(s)	80, 92, 486
BspHI	TCATGA	1 cut(s)	27
BsrDI	GCAATG	1 cut(s)	482
BsrI	ACTGG	2 cut(s)	349, 448
BssECI	CCNNGG	5 cut(s)	67, 131, 141, 333, 334
BssT1I	CCWWGG	1 cut(s)	67
Bst2UI	CCWGG	2 cut(s)	132, 335
Bst4CI	ACNGT	2 cut(s)	266, 368
BstC8I	GCNNGC	3 cut(s)	47, 85, 276
BstDEI	CTNAG	4 cut(s)	248, 256, 453, 522
BstDSI	CCRYGG	1 cut(s)	141
BstF5I	GGATG	1 cut(s)	103
BstFNI	CGCG	3 cut(s)	80, 92, 486
BstHHI	GCGC	1 cut(s)	80
BstMAI	GTCTC	1 cut(s)	2
BstMWI	GCNNNNNNNGC	4 cut(s)	84, 89, 275, 515
BstNI	CCWGG	2 cut(s)	132, 335
BstNSI	RCATGY	1 cut(s)	414
BstSCI	CCNGG	2 cut(s)	130, 333
BstSLI	GKGCMC	1 cut(s)	271
BstUI	CGCG	3 cut(s)	80, 92, 486
BstV1I	GCAGC	2 cut(s)	153, 440
BsuRI	GGCC	3 cut(s)	49, 254, 300
BtgI	CCRYGG	1 cut(s)	141
BtsCI	GGATG	1 cut(s)	103
BtsI	GCAGTG	1 cut(s)	269
BtsIMutI	CAGTG	2 cut(s)	269, 271
Cac8I	GCNNGC	3 cut(s)	47, 85, 276
CciI	TCATGA	1 cut(s)	27
CfoI	GCGC	1 cut(s)	80
Cfr13I	GGNCC	3 cut(s)	128, 252, 419
CseI	GACGC	2 cut(s)	98, 492
Csp6I	GTAC	1 cut(s)	262
CviAII	CATG	4 cut(s)	28, 170, 411, 465
CviQI	GTAC	1 cut(s)	262
DdeI	CTNAG	4 cut(s)	248, 256, 453, 522
EaeI	YGGCCR	1 cut(s)	47
Eco130I	CCWWGG	1 cut(s)	67
Eco47I	GGWCC	2 cut(s)	128, 419
EcoO109I	RGGNCCY	1 cut(s)	252
EcoRII	CCWGG	2 cut(s)	130, 333
EcoT14I	CCWWGG	1 cut(s)	67
ErhI	CCWWGG	1 cut(s)	67
FaeI	CATG	4 cut(s)	31, 173, 414, 468
FaqI	GGGAC	1 cut(s)	71
FatI	CATG	4 cut(s)	27, 169, 410, 464
FauI	CCCGC	1 cut(s)	76
FauNDI	CATATG	1 cut(s)	186
Fnu4HI	GCNGC	3 cut(s)	81, 167, 429
FokI	GGATG	1 cut(s)	110
Fsp4HI	GCNGC	3 cut(s)	81, 167, 429
GlaI	GCGC	1 cut(s)	79
GluI	GCNGC	3 cut(s)	81, 167, 429
HaeIII	GGCC	3 cut(s)	49, 254, 300
HapII	CCGG	1 cut(s)	499
HgaI	GACGC	2 cut(s)	98, 492
HhaI	GCGC	1 cut(s)	80
Hin1II	CATG	4 cut(s)	31, 173, 414, 468
Hin6I	GCGC	1 cut(s)	78
HinP1I	GCGC	1 cut(s)	78
HindIII	AAGCTT	1 cut(s)	206
HinfI	GANTC	3 cut(s)	63, 244, 356
HpaII	CCGG	1 cut(s)	499
Hpy166II	GTNNAC	3 cut(s)	182, 269, 482
Hpy188I	TCNGA	4 cut(s)	104, 157, 259, 318
Hpy188III	TCNNGA	1 cut(s)	28
Hpy8I	GTNNAC	3 cut(s)	182, 269, 482
Hpy99I	CGWCG	1 cut(s)	92
HpyCH4III	ACNGT	2 cut(s)	266, 368
HpyCH4IV	ACGT	1 cut(s)	178
HpyCH4V	TGCA	5 cut(s)	169, 269, 364, 475, 509
HpyF10VI	GCNNNNNNNGC	4 cut(s)	84, 89, 275, 515
HpyF3I	CTNAG	4 cut(s)	248, 256, 453, 522
HpySE526I	ACGT	1 cut(s)	178
Hsp92II	CATG	4 cut(s)	31, 173, 414, 468
HspAI	GCGC	1 cut(s)	78
LmnI	GCTCC	2 cut(s)	239, 318
Lsp1109I	GCAGC	2 cut(s)	153, 440
LweI	GCATC	1 cut(s)	287
MaeII	ACGT	1 cut(s)	178
MaeIII	GTNAC	1 cut(s)	456
MboII	GAAGA	1 cut(s)	396
MhlI	GDGCHC	1 cut(s)	271
MluCI	AATT	3 cut(s)	108, 149, 214
MluI	ACGCGT	1 cut(s)	484
MlyI	GAGTC	2 cut(s)	57, 365
MnlI	CCTC	5 cut(s)	8, 24, 33, 151, 265
MroXI	GAANNNNTTC	1 cut(s)	312
MseI	TTAA	2 cut(s)	327, 470
MspI	CCGG	1 cut(s)	499
MspR9I	CCNGG	2 cut(s)	132, 335
Mva1269I	GAATGC	1 cut(s)	136
MvaI	CCWGG	2 cut(s)	132, 335
MvnI	CGCG	3 cut(s)	80, 92, 486
MwoI	GCNNNNNNNGC	4 cut(s)	84, 89, 275, 515
NdeI	CATATG	1 cut(s)	186
NlaIII	CATG	4 cut(s)	31, 173, 414, 468
NspI	RCATGY	1 cut(s)	414
PagI	TCATGA	1 cut(s)	27
PasI	CCCWGGG	1 cut(s)	334
PciI	ACATGT	1 cut(s)	410
PctI	GAATGC	1 cut(s)	136
PdmI	GAANNNNTTC	1 cut(s)	312
PfeI	GAWTC	1 cut(s)	244
PflMI	CCANNNNNTGG	1 cut(s)	443
PkrI	GCNGC	3 cut(s)	82, 168, 430
PleI	GAGTC	2 cut(s)	57, 364
PpsI	GAGTC	2 cut(s)	57, 364
PscI	ACATGT	1 cut(s)	410
Psp1406I	AACGTT	1 cut(s)	178
Psp6I	CCWGG	2 cut(s)	130, 333
PspGI	CCWGG	2 cut(s)	130, 333
PspPI	GGNCC	3 cut(s)	128, 252, 419
RsaI	GTAC	1 cut(s)	263
RsaNI	GTAC	1 cut(s)	262
SaqAI	TTAA	2 cut(s)	327, 470
SatI	GCNGC	3 cut(s)	81, 167, 429
Sau96I	GGNCC	3 cut(s)	128, 252, 419
SchI	GAGTC	2 cut(s)	57, 365
ScrFI	CCNGG	2 cut(s)	132, 335
SduI	GDGCHC	1 cut(s)	271
SetI	ASST	9 cut(s)	26, 133, 162, 181, 210, 236, 323, 421, 433
SfaNI	GCATC	1 cut(s)	287
SinI	GGWCC	2 cut(s)	128, 419
Sse9I	AATT	3 cut(s)	108, 149, 214
SsiI	CCGC	3 cut(s)	80, 83, 92
StyD4I	CCNGG	2 cut(s)	130, 333
StyI	CCWWGG	1 cut(s)	67
TaaI	ACNGT	2 cut(s)	266, 368
TaiI	ACGT	1 cut(s)	181
TasI	AATT	3 cut(s)	108, 149, 214
TatI	WGTACW	1 cut(s)	261
TauI	GCSGC	1 cut(s)	83
TfiI	GAWTC	1 cut(s)	244
Tru1I	TTAA	2 cut(s)	327, 470
Tru9I	TTAA	2 cut(s)	327, 470
TscAI	CASTG	2 cut(s)	271, 276
TseI	GCWGC	2 cut(s)	166, 428
TspDTI	ATGAA	3 cut(s)	16, 186, 257
TspGWI	ACGGA	2 cut(s)	75, 130
TspRI	CASTG	2 cut(s)	271, 276
Van91I	CCANNNNNTGG	1 cut(s)	443
VneI	GTGCAC	1 cut(s)	267
VpaK11BI	GGWCC	2 cut(s)	128, 419
XceI	RCATGY	1 cut(s)	414
XcmI	CCANNNNNNNNNTGG	1 cut(s)	341
XmnI	GAANNNNTTC	1 cut(s)	312

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.