Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0008526

Physical Location & Seq

Genomic Coordinates Reverse (-)

24195795 .. 24196801

Gene Structure 1007 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g26390.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGTCAGGGAGGAAAGAAACAGTTTTGGACCTGGCCAAGTTTGTGGACAAGGGTGTCCAAGTCAAGCTCACCGGCGGTAGACAAGTGACGGGGACTCTTAAAGGTTATGACCAGTTGTTAAACCTTGTTCTAGATGAAGCAGTGGAGTTTCTAAGAGATTCTGATGATCGATTGAAGACCACTGATCAGACCAGGCGCCTTGGCCTCATAGTATGTTTTCTTCTAGTTTATCTCTGTTGTAGGATCTTAAGAAAACTGCATGGGAACTTGATATATATTGATGTTGGCTGTTGTAGGATCTATGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0005688 GO:0005689 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0030532 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071004 GO:0071010 GO:0071013 GO:0071704 GO:0090304 GO:0097525 GO:0097526 GO:0120114 GO:1901360 GO:1902494 GO:1990726 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03018 ko03040 map03018 map03040

Pfam Domains

Protein Families

LSM

Protein Analysis

103

Amino Acids

11.59

Weight (kDa)

8.9

Isoelectric Point (pI)

14.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008526)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G03870 AT2G03870
fragaria_vesca	FvH4_7g00800 FvH4_7g00800
malus_domestica	MD02G1314900.v1.1 MD07G1007200.v1.1
prunus_persica	Prupe.2G010100_v2.0.a1 Prupe.2G010100_v2.0.a1 Prupe.2G010100_v2.0.a1
pyrus_communis	pycom02g26390 pycom07g00570
rosa_chinensis	RchiOBHm_Chr1g0314961
rosa_multiflora	Rmu_sc0005168.1_g000014
rosa_roxburghii	Rroxscaffold_4G00331640
rosa_rugosa	Rorug01G0003600 Rorug01G0003700 Rorug01G0003800 Rorug01G0003900
rosa_samantha	Rh1AG014300 Rh1BG006100 Rh1CG012400 Rh1DG007900
rosa_wichuraiana	Rw1G000680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	53
AccB1I	GGYRCC	1 cut(s)	195
AccI	GTMKAC	1 cut(s)	79
AciI	CCGC	1 cut(s)	75
AclWI	GGATC	2 cut(s)	251, 305
AcoI	YGGCCR	1 cut(s)	33
AcyI	GRCGYC	1 cut(s)	196
AflII	CTTAAG	1 cut(s)	247
AgsI	TTSAA	1 cut(s)	175
AjnI	CCWGG	2 cut(s)	30, 191
AluBI	AGCT	1 cut(s)	67
AluI	AGCT	1 cut(s)	67
AlwI	GGATC	2 cut(s)	251, 305
AoxI	GGCC	2 cut(s)	33, 202
AspLEI	GCGC	1 cut(s)	198
AspS9I	GGNCC	1 cut(s)	28
AsuHPI	GGTGA	1 cut(s)	61
AvaII	GGWCC	1 cut(s)	28
BalI	TGGCCA	1 cut(s)	35
BanI	GGYRCC	1 cut(s)	195
BarI	GAAGNNNNNNTAC	2 cut(s)	204, 236
BbsI	GAAGAC	1 cut(s)	182
BciT130I	CCWGG	2 cut(s)	32, 193
BclI	TGATCA	1 cut(s)	184
BfaI	CTAG	2 cut(s)	131, 224
BfoI	RGCGCY	1 cut(s)	199
BfrI	CTTAAG	1 cut(s)	247
Bme1390I	CCNGG	2 cut(s)	32, 193
Bme18I	GGWCC	1 cut(s)	28
BmgT120I	GGNCC	1 cut(s)	28
BmiI	GGNNCC	1 cut(s)	197
BmrFI	CCNGG	2 cut(s)	32, 193
BpiI	GAAGAC	1 cut(s)	182
Bsa29I	ATCGAT	1 cut(s)	169
BsaHI	GRCGYC	1 cut(s)	196
BsaJI	CCNNGG	1 cut(s)	199
Bse118I	RCCGGY	1 cut(s)	71
Bse1I	ACTGG	1 cut(s)	112
BseBI	CCWGG	2 cut(s)	32, 193
BseCI	ATCGAT	1 cut(s)	169
BseDI	CCNNGG	1 cut(s)	199
BseNI	ACTGG	1 cut(s)	112
BshFI	GGCC	2 cut(s)	35, 204
BshNI	GGYRCC	1 cut(s)	195
BshVI	ATCGAT	1 cut(s)	169
BsiSI	CCGG	1 cut(s)	72
BslFI	GGGAC	1 cut(s)	106
BsmFI	GGGAC	1 cut(s)	106
BsnI	GGCC	2 cut(s)	35, 204
Bsp143I	GATC	4 cut(s)	166, 184, 243, 297
BspACI	CCGC	1 cut(s)	75
BspANI	GGCC	2 cut(s)	35, 204
BspDI	ATCGAT	1 cut(s)	169
BspLI	GGNNCC	1 cut(s)	197
BspPI	GGATC	2 cut(s)	251, 305
BspT107I	GGYRCC	1 cut(s)	195
BspTI	CTTAAG	1 cut(s)	247
BsrFI	RCCGGY	1 cut(s)	71
BsrI	ACTGG	1 cut(s)	112
BssAI	RCCGGY	1 cut(s)	71
BssECI	CCNNGG	1 cut(s)	199
BssMI	GATC	4 cut(s)	166, 184, 243, 297
BssNI	GRCGYC	1 cut(s)	196
BssT1I	CCWWGG	1 cut(s)	199
Bst2UI	CCWGG	2 cut(s)	32, 193
Bst4CI	ACNGT	1 cut(s)	22
BstACI	GRCGYC	1 cut(s)	196
BstAFI	CTTAAG	1 cut(s)	247
BstDEI	CTNAG	1 cut(s)	152
BstH2I	RGCGCY	1 cut(s)	199
BstHHI	GCGC	1 cut(s)	198
BstKTI	GATC	4 cut(s)	169, 187, 246, 300
BstMBI	GATC	4 cut(s)	166, 184, 243, 297
BstNI	CCWGG	2 cut(s)	32, 193
BstSCI	CCNGG	2 cut(s)	30, 191
BstV2I	GAAGAC	1 cut(s)	182
BstX2I	RGATCY	2 cut(s)	243, 297
BstXI	CCANNNNNNTGG	1 cut(s)	43
BstYI	RGATCY	2 cut(s)	243, 297
Bsu15I	ATCGAT	1 cut(s)	169
BsuRI	GGCC	2 cut(s)	35, 204
BsuTUI	ATCGAT	1 cut(s)	169
BtsI	GCAGTG	1 cut(s)	147
BtsIMutI	CAGTG	2 cut(s)	147, 180
CfoI	GCGC	1 cut(s)	198
Cfr10I	RCCGGY	1 cut(s)	71
Cfr13I	GGNCC	1 cut(s)	28
ClaI	ATCGAT	1 cut(s)	169
CviAII	CATG	1 cut(s)	260
CviJI	RGCY	4 cut(s)	35, 67, 204, 288
CviKI_1	RGCY	4 cut(s)	35, 67, 204, 288
DdeI	CTNAG	1 cut(s)	152
DinI	GGCGCC	1 cut(s)	197
DpnI	GATC	4 cut(s)	168, 186, 245, 299
DpnII	GATC	4 cut(s)	166, 184, 243, 297
DrdI	GACNNNNNNGTC	1 cut(s)	53
DseDI	GACNNNNNNGTC	1 cut(s)	53
EaeI	YGGCCR	1 cut(s)	33
Eco130I	CCWWGG	1 cut(s)	199
Eco47I	GGWCC	1 cut(s)	28
EcoRII	CCWGG	2 cut(s)	30, 191
EcoT14I	CCWWGG	1 cut(s)	199
EgeI	GGCGCC	1 cut(s)	197
EheI	GGCGCC	1 cut(s)	197
ErhI	CCWWGG	1 cut(s)	199
FaeI	CATG	1 cut(s)	263
FaiI	YATR	7 cut(s)	108, 209, 214, 261, 274, 276, 303
FaqI	GGGAC	1 cut(s)	106
FatI	CATG	1 cut(s)	259
FbaI	TGATCA	1 cut(s)	184
FblI	GTMKAC	1 cut(s)	79
FspBI	CTAG	2 cut(s)	131, 224
GlaI	GCGC	1 cut(s)	197
HaeII	RGCGCY	1 cut(s)	199
HaeIII	GGCC	2 cut(s)	35, 204
HapII	CCGG	1 cut(s)	72
HhaI	GCGC	1 cut(s)	198
Hin1I	GRCGYC	1 cut(s)	196
Hin1II	CATG	1 cut(s)	263
Hin6I	GCGC	1 cut(s)	196
HinP1I	GCGC	1 cut(s)	196
HinfI	GANTC	2 cut(s)	94, 158
HpaII	CCGG	1 cut(s)	72
HphI	GGTGA	1 cut(s)	61
Hpy166II	GTNNAC	2 cut(s)	46, 80
Hpy188I	TCNGA	2 cut(s)	163, 189
Hpy188III	TCNNGA	1 cut(s)	131
Hpy8I	GTNNAC	2 cut(s)	46, 80
HpyCH4III	ACNGT	1 cut(s)	22
HpyCH4V	TGCA	1 cut(s)	259
HpyF3I	CTNAG	1 cut(s)	152
Hsp92I	GRCGYC	1 cut(s)	196
Hsp92II	CATG	1 cut(s)	263
HspAI	GCGC	1 cut(s)	196
KasI	GGCGCC	1 cut(s)	195
Ksp22I	TGATCA	1 cut(s)	184
Kzo9I	GATC	4 cut(s)	166, 184, 243, 297
LpnPI	CCDG	6 cut(s)	17, 44, 85, 125, 178, 205
MaeI	CTAG	2 cut(s)	131, 224
MaeIII	GTNAC	1 cut(s)	85
MalI	GATC	4 cut(s)	168, 186, 245, 299
MboI	GATC	4 cut(s)	166, 184, 243, 297
MboII	GAAGA	2 cut(s)	187, 212
MflI	RGATCY	2 cut(s)	243, 297
MlsI	TGGCCA	1 cut(s)	35
MluNI	TGGCCA	1 cut(s)	35
Mly113I	GGCGCC	1 cut(s)	196
MlyI	GAGTC	1 cut(s)	88
MnlI	CCTC	2 cut(s)	3, 215
Mox20I	TGGCCA	1 cut(s)	35
MscI	TGGCCA	1 cut(s)	35
MseI	TTAA	4 cut(s)	99, 119, 248, 307
Msp20I	TGGCCA	1 cut(s)	35
MspCI	CTTAAG	1 cut(s)	247
MspI	CCGG	1 cut(s)	72
MspR9I	CCNGG	2 cut(s)	32, 193
MvaI	CCWGG	2 cut(s)	32, 193
NarI	GGCGCC	1 cut(s)	196
NdeII	GATC	4 cut(s)	166, 184, 243, 297
NlaIII	CATG	1 cut(s)	263
NlaIV	GGNNCC	1 cut(s)	197
NmuCI	GTSAC	1 cut(s)	85
PfeI	GAWTC	1 cut(s)	158
PleI	GAGTC	1 cut(s)	88
PluTI	GGCGCC	1 cut(s)	199
PpsI	GAGTC	1 cut(s)	88
Psp6I	CCWGG	2 cut(s)	30, 191
PspGI	CCWGG	2 cut(s)	30, 191
PspN4I	GGNNCC	1 cut(s)	197
PspPI	GGNCC	1 cut(s)	28
PsuI	RGATCY	2 cut(s)	243, 297
SaqAI	TTAA	4 cut(s)	99, 119, 248, 307
Sau3AI	GATC	4 cut(s)	166, 184, 243, 297
Sau96I	GGNCC	1 cut(s)	28
SchI	GAGTC	1 cut(s)	88
ScrFI	CCNGG	2 cut(s)	32, 193
SetI	ASST	4 cut(s)	33, 69, 106, 126
SfoI	GGCGCC	1 cut(s)	197
SgrAI	CRCCGGYG	1 cut(s)	71
SinI	GGWCC	1 cut(s)	28
SmlI	CTYRAG	1 cut(s)	247
SmoI	CTYRAG	1 cut(s)	247
SsiI	CCGC	1 cut(s)	75
SspDI	GGCGCC	1 cut(s)	195
SspMI	CTAG	2 cut(s)	131, 224
StyD4I	CCNGG	2 cut(s)	30, 191
StyI	CCWWGG	1 cut(s)	199
TaaI	ACNGT	1 cut(s)	22
TaqI	TCGA	1 cut(s)	169
TfiI	GAWTC	1 cut(s)	158
Tru1I	TTAA	4 cut(s)	99, 119, 248, 307
Tru9I	TTAA	4 cut(s)	99, 119, 248, 307
TscAI	CASTG	2 cut(s)	147, 187
TseFI	GTSAC	1 cut(s)	85
Tsp45I	GTSAC	1 cut(s)	85
TspDTI	ATGAA	1 cut(s)	150
TspRI	CASTG	2 cut(s)	147, 187
Vha464I	CTTAAG	1 cut(s)	247
VpaK11BI	GGWCC	1 cut(s)	28
XbaI	TCTAGA	1 cut(s)	130
XmiI	GTMKAC	1 cut(s)	79
XspI	CTAG	2 cut(s)	131, 224

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.