FvH4_7g00800

U6 snRNA-associated Sm-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0008526
Physical Location & Seq
Forward (+)
1295678 .. 1299531
3854 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g00800.t2

Sequence Viewer

Length: 300 bp
ATGTCAGGGAGGAAAGAAACAGTGTTGGACTTGGCCAAGTTTGTGGACAAAGGTGTTCAAGTCAAGCTCACTGGTGGTAGACAAGTGACAGGGACTCTGAAAGGATATGATCAGTTGTTAAACCTTGTTCTAGATGAAGCAGTTGAGTTCATAAGAGATTCTGATGATCCACTGAAGACTACTGATCAAACCAGGCGCCTCGGCCTAATTGTTTGTAGGGGAACTGCTGTGATGCTTGTGTCGCCAACAGATGGTACAGATGAGATTGCTAACCCCTTTAGCCAGCCAGATGGTGCCTAA

Protein Analysis

100

Amino Acids

10.71

Weight (kDa)

4.79

Isoelectric Point (pI)

21.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LSM PF01423 10 - 71 1.5e-16 LSM domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 195, 293
AccB7I CCANNNNNTGG 1 cut(s) 251
AccI GTMKAC 1 cut(s) 79
AclWI GGATC 1 cut(s) 161
AcoI YGGCCR 1 cut(s) 33
AcuI CTGAAG 1 cut(s) 194
AcyI GRCGYC 1 cut(s) 196
AfaI GTAC 1 cut(s) 256
AfiI CCNNNNNNNGG 1 cut(s) 251
AgsI TTSAA 1 cut(s) 59
AjnI CCWGG 1 cut(s) 191
AluBI AGCT 1 cut(s) 67
AluI AGCT 1 cut(s) 67
AlwI GGATC 1 cut(s) 161
AoxI GGCC 2 cut(s) 33, 202
AspLEI GCGC 1 cut(s) 198
BalI TGGCCA 1 cut(s) 35
BanI GGYRCC 2 cut(s) 195, 293
BbsI GAAGAC 1 cut(s) 182
BccI CCATC 2 cut(s) 245, 284
BciT130I CCWGG 1 cut(s) 193
BclI TGATCA 2 cut(s) 109, 184
BfaI CTAG 1 cut(s) 131
BfoI RGCGCY 1 cut(s) 199
Bme1390I CCNGG 1 cut(s) 193
BmiI GGNNCC 2 cut(s) 197, 295
BmrFI CCNGG 1 cut(s) 193
BmsI GCATC 1 cut(s) 222
BpiI GAAGAC 1 cut(s) 182
BsaHI GRCGYC 1 cut(s) 196
BsaJI CCNNGG 1 cut(s) 199
Bsc4I CCNNNNNNNGG 1 cut(s) 251
Bse1I ACTGG 1 cut(s) 76
BseBI CCWGG 1 cut(s) 193
BseDI CCNNGG 1 cut(s) 199
BseLI CCNNNNNNNGG 1 cut(s) 251
BseNI ACTGG 1 cut(s) 76
BshFI GGCC 2 cut(s) 35, 204
BshNI GGYRCC 2 cut(s) 195, 293
BslFI GGGAC 1 cut(s) 106
BslI CCNNNNNNNGG 1 cut(s) 251
BsmFI GGGAC 1 cut(s) 106
BsnI GGCC 2 cut(s) 35, 204
Bsp143I GATC 3 cut(s) 109, 166, 184
BspANI GGCC 2 cut(s) 35, 204
BspLI GGNNCC 2 cut(s) 197, 295
BspPI GGATC 1 cut(s) 161
BspT107I GGYRCC 2 cut(s) 195, 293
BsrI ACTGG 1 cut(s) 76
BssECI CCNNGG 1 cut(s) 199
BssMI GATC 3 cut(s) 109, 166, 184
BssNI GRCGYC 1 cut(s) 196
Bst2UI CCWGG 1 cut(s) 193
Bst4CI ACNGT 1 cut(s) 22
BstACI GRCGYC 1 cut(s) 196
BstC8I GCNNGC 1 cut(s) 284
BstH2I RGCGCY 1 cut(s) 199
BstHHI GCGC 1 cut(s) 198
BstKTI GATC 3 cut(s) 112, 169, 187
BstMBI GATC 3 cut(s) 109, 166, 184
BstMWI GCNNNNNNNGC 1 cut(s) 241
BstNI CCWGG 1 cut(s) 193
BstSCI CCNGG 1 cut(s) 191
BstV2I GAAGAC 1 cut(s) 182
BstXI CCANNNNNNTGG 2 cut(s) 43, 290
BsuRI GGCC 2 cut(s) 35, 204
BtsIMutI CAGTG 3 cut(s) 27, 69, 170
Cac8I GCNNGC 1 cut(s) 284
CfoI GCGC 1 cut(s) 198
Csp6I GTAC 1 cut(s) 255
CviJI RGCY 5 cut(s) 35, 67, 204, 282, 286
CviKI_1 RGCY 5 cut(s) 35, 67, 204, 282, 286
CviQI GTAC 1 cut(s) 255
DinI GGCGCC 1 cut(s) 197
DpnI GATC 3 cut(s) 111, 168, 186
DpnII GATC 3 cut(s) 109, 166, 184
EaeI YGGCCR 1 cut(s) 33
Eco57I CTGAAG 1 cut(s) 194
EcoRII CCWGG 1 cut(s) 191
EgeI GGCGCC 1 cut(s) 197
EheI GGCGCC 1 cut(s) 197
FaiI YATR 2 cut(s) 108, 152
FaqI GGGAC 1 cut(s) 106
FbaI TGATCA 2 cut(s) 109, 184
FblI GTMKAC 1 cut(s) 79
FspBI CTAG 1 cut(s) 131
GlaI GCGC 1 cut(s) 197
HaeII RGCGCY 1 cut(s) 199
HaeIII GGCC 2 cut(s) 35, 204
HhaI GCGC 1 cut(s) 198
Hin1I GRCGYC 1 cut(s) 196
Hin6I GCGC 1 cut(s) 196
HinP1I GCGC 1 cut(s) 196
HinfI GANTC 2 cut(s) 94, 158
Hpy166II GTNNAC 2 cut(s) 46, 80
Hpy188I TCNGA 2 cut(s) 99, 163
Hpy188III TCNNGA 1 cut(s) 131
Hpy8I GTNNAC 2 cut(s) 46, 80
HpyCH4III ACNGT 1 cut(s) 22
HpyF10VI GCNNNNNNNGC 1 cut(s) 241
Hsp92I GRCGYC 1 cut(s) 196
HspAI GCGC 1 cut(s) 196
KasI GGCGCC 1 cut(s) 195
Ksp22I TGATCA 2 cut(s) 109, 184
Kzo9I GATC 3 cut(s) 109, 166, 184
LpnPI CCDG 5 cut(s) 57, 75, 178, 205, 296
LweI GCATC 1 cut(s) 222
MaeI CTAG 1 cut(s) 131
MaeIII GTNAC 1 cut(s) 85
MalI GATC 3 cut(s) 111, 168, 186
MboI GATC 3 cut(s) 109, 166, 184
MboII GAAGA 1 cut(s) 187
MlsI TGGCCA 1 cut(s) 35
MluCI AATT 1 cut(s) 207
MluNI TGGCCA 1 cut(s) 35
Mly113I GGCGCC 1 cut(s) 196
MlyI GAGTC 1 cut(s) 88
MmeI TCCRAC 1 cut(s) 6
MnlI CCTC 2 cut(s) 3, 209
Mox20I TGGCCA 1 cut(s) 35
MscI TGGCCA 1 cut(s) 35
MseI TTAA 1 cut(s) 119
Msp20I TGGCCA 1 cut(s) 35
MspR9I CCNGG 1 cut(s) 193
MvaI CCWGG 1 cut(s) 193
MwoI GCNNNNNNNGC 1 cut(s) 241
NarI GGCGCC 1 cut(s) 196
NdeII GATC 3 cut(s) 109, 166, 184
NlaIV GGNNCC 2 cut(s) 197, 295
NmeAIII GCCGAG 1 cut(s) 180
NmuCI GTSAC 1 cut(s) 85
PfeI GAWTC 1 cut(s) 158
PflMI CCANNNNNTGG 1 cut(s) 251
PleI GAGTC 1 cut(s) 88
PluTI GGCGCC 1 cut(s) 199
PpsI GAGTC 1 cut(s) 88
Psp6I CCWGG 1 cut(s) 191
PspGI CCWGG 1 cut(s) 191
PspN4I GGNNCC 2 cut(s) 197, 295
RsaI GTAC 1 cut(s) 256
RsaNI GTAC 1 cut(s) 255
SaqAI TTAA 1 cut(s) 119
Sau3AI GATC 3 cut(s) 109, 166, 184
SchI GAGTC 1 cut(s) 88
ScrFI CCNGG 1 cut(s) 193
SetI ASST 3 cut(s) 55, 69, 126
SfaNI GCATC 1 cut(s) 222
SfoI GGCGCC 1 cut(s) 197
Sse9I AATT 1 cut(s) 207
SspDI GGCGCC 1 cut(s) 195
SspMI CTAG 1 cut(s) 131
StyD4I CCNGG 1 cut(s) 191
TaaI ACNGT 1 cut(s) 22
TasI AATT 1 cut(s) 207
TfiI GAWTC 1 cut(s) 158
Tru1I TTAA 1 cut(s) 119
Tru9I TTAA 1 cut(s) 119
TscAI CASTG 3 cut(s) 27, 76, 177
TseFI GTSAC 1 cut(s) 85
Tsp45I GTSAC 1 cut(s) 85
TspDTI ATGAA 2 cut(s) 139, 150
TspRI CASTG 3 cut(s) 27, 76, 177
Van91I CCANNNNNTGG 1 cut(s) 251
XbaI TCTAGA 1 cut(s) 130
XmiI GTMKAC 1 cut(s) 79
XspI CTAG 1 cut(s) 131
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.