AT2G04340

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0011039
Physical Location & Seq
Forward (+)
1513490 .. 1515594
2105 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G04340.1

Sequence Viewer

Length: 522 bp
ATGATGTCTCGACAGAGTCAGTTATTTACATTGCTTAGGAGAAGGTTTCATTCACCGTCTAATGATGCCCCAACGGAGACCTTAAGAAAGAAGATAGCCGATTTGCAAAAGAGTAAGAAGCGAAGGAACCCAATAAAGAACCAGTTTCTAGTTGAGGTTCCAGAATCAAGATCATATTTAGACACAGCAACGATGCCTATGTTCCTCGCTGTTGTAGGTATCGCATTATTTGCAAAGGTGCTAATGATGATCGATGATTCGAAATCGCAAGAAATGATTGAACGCAAGATAAAGAATGCACCACAGGGGCAAGGCACGGTACGAATGATCGATCGTGAGGAGTGGGATGAGTTTAGAGAAGTAAGGCCAAGAACACCTTTTGAGTCAAAGCTTGCTCGCCCAAATGCACAAATAAGAACTGGAGAACCTGTGCGCAAGGATGACTTGAAAAACTGGACAATAGACGTGCTAACAAATGCTCTTGAACGAACCGAAGAAAGTGTTCGCCGTGGTTCCAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

173

Amino Acids

20.15

Weight (kDa)

10.09

Isoelectric Point (pI)

61.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011039)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G04340
fragaria_vesca FvH4_5g09330 FvH4_5g09330 FvH4_5g09330
malus_domestica MD06G1132000.v1.1 MD14G1148400.v1.1
prunus_persica Prupe.5G143000_v2.0.a1
pyrus_communis pycom06g12360 pycom14g12310
rosa_chinensis RchiOBHm_Chr7g0188821
rosa_laevigata RLG00000004656
rosa_multiflora Rmu_ssc0000053.1_g000001
rosa_roxburghii Rroxscaffold_3G00265990
rosa_rugosa Rorug06G0494100 Rorug06G0494200
rosa_samantha Rh7AG099000 Rh7BG100700 Rh7CG102200 Rh7DG100800
rosa_wichuraiana Rw7G008530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 434
AfaI GTAC 1 cut(s) 321
AflII CTTAAG 1 cut(s) 82
AgsI TTSAA 3 cut(s) 281, 448, 485
AjiI CACGTC 1 cut(s) 466
AluBI AGCT 1 cut(s) 391
AluI AGCT 1 cut(s) 391
Alw26I GTCTC 2 cut(s) 12, 71
AoxI GGCC 1 cut(s) 365
Asp700I GAANNNNTTC 1 cut(s) 501
AspLEI GCGC 1 cut(s) 435
AsuHPI GGTGA 1 cut(s) 45
AsuII TTCGAA 1 cut(s) 260
BceAI ACGGC 1 cut(s) 492
BcoDI GTCTC 2 cut(s) 12, 71
BfaI CTAG 1 cut(s) 149
BfrI CTTAAG 1 cut(s) 82
BmgBI CACGTC 1 cut(s) 466
BmiI GGNNCC 3 cut(s) 128, 159, 514
BmsI GCATC 2 cut(s) 55, 183
BpmI CTGGAG 1 cut(s) 441
Bpu10I CCTNAGC 1 cut(s) 35
Bpu14I TTCGAA 1 cut(s) 260
Bsa29I ATCGAT 2 cut(s) 252, 330
BsaI GGTCTC 1 cut(s) 71
BsaJI CCNNGG 1 cut(s) 508
BsaXI ACNNNNNCTCC 2 cut(s) 414, 444
Bse1I ACTGG 4 cut(s) 142, 424, 458, 516
Bse3DI GCAATG 1 cut(s) 29
BseCI ATCGAT 2 cut(s) 252, 330
BseDI CCNNGG 1 cut(s) 508
BseGI GGATG 2 cut(s) 352, 445
BseMI GCAATG 1 cut(s) 29
BseNI ACTGG 4 cut(s) 142, 424, 458, 516
BseRI GAGGAG 1 cut(s) 353
Bsh1285I CGRYCG 1 cut(s) 334
BshFI GGCC 1 cut(s) 367
BshVI ATCGAT 2 cut(s) 252, 330
BsiEI CGRYCG 1 cut(s) 334
BsmAI GTCTC 2 cut(s) 12, 71
BsmI GAATGC 1 cut(s) 301
BsnI GGCC 1 cut(s) 367
Bso31I GGTCTC 1 cut(s) 71
Bsp119I TTCGAA 1 cut(s) 260
Bsp143I GATC 4 cut(s) 170, 249, 327, 331
BspANI GGCC 1 cut(s) 367
BspDI ATCGAT 2 cut(s) 252, 330
BspLI GGNNCC 3 cut(s) 128, 159, 514
BspT104I TTCGAA 1 cut(s) 260
BspTI CTTAAG 1 cut(s) 82
BspTNI GGTCTC 1 cut(s) 71
BsrDI GCAATG 1 cut(s) 29
BsrI ACTGG 4 cut(s) 142, 424, 458, 516
BssECI CCNNGG 1 cut(s) 508
BssMI GATC 4 cut(s) 170, 249, 327, 331
Bst4CI ACNGT 2 cut(s) 57, 319
BstAFI CTTAAG 1 cut(s) 82
BstAPI GCANNNNNTGC 1 cut(s) 230
BstBI TTCGAA 1 cut(s) 260
BstC8I GCNNGC 2 cut(s) 393, 397
BstDEI CTNAG 1 cut(s) 35
BstDSI CCRYGG 1 cut(s) 508
BstF5I GGATG 2 cut(s) 352, 445
BstHHI GCGC 1 cut(s) 435
BstKTI GATC 4 cut(s) 173, 252, 330, 334
BstMAI GTCTC 2 cut(s) 12, 71
BstMBI GATC 4 cut(s) 170, 249, 327, 331
BstMCI CGRYCG 1 cut(s) 334
BstMWI GCNNNNNNNGC 1 cut(s) 230
Bsu15I ATCGAT 2 cut(s) 252, 330
BsuRI GGCC 1 cut(s) 367
BsuTUI ATCGAT 2 cut(s) 252, 330
BtgI CCRYGG 1 cut(s) 508
BtrI CACGTC 1 cut(s) 466
BtsCI GGATG 2 cut(s) 352, 445
Cac8I GCNNGC 2 cut(s) 393, 397
CfoI GCGC 1 cut(s) 435
ClaI ATCGAT 2 cut(s) 252, 330
Csp6I GTAC 1 cut(s) 320
CviJI RGCY 3 cut(s) 98, 367, 391
CviKI_1 RGCY 3 cut(s) 98, 367, 391
CviQI GTAC 1 cut(s) 320
DdeI CTNAG 1 cut(s) 35
DpnI GATC 4 cut(s) 172, 251, 329, 333
DpnII GATC 4 cut(s) 170, 249, 327, 331
Eco31I GGTCTC 1 cut(s) 71
FaiI YATR 2 cut(s) 175, 200
FalI AAGNNNNNCTT 4 cut(s) 361, 393, 428, 460
FokI GGATG 2 cut(s) 359, 452
FspBI CTAG 1 cut(s) 149
FspI TGCGCA 1 cut(s) 434
GlaI GCGC 1 cut(s) 434
GsuI CTGGAG 1 cut(s) 441
HaeIII GGCC 1 cut(s) 367
HhaI GCGC 1 cut(s) 435
Hin6I GCGC 1 cut(s) 433
HinP1I GCGC 1 cut(s) 433
HindIII AAGCTT 1 cut(s) 389
HinfI GANTC 4 cut(s) 16, 164, 257, 383
HphI GGTGA 1 cut(s) 45
Hpy188III TCNNGA 5 cut(s) 9, 161, 168, 335, 482
HpyAV CCTTC 2 cut(s) 36, 117
HpyCH4III ACNGT 2 cut(s) 57, 319
HpyCH4IV ACGT 1 cut(s) 465
HpyCH4V TGCA 4 cut(s) 106, 233, 299, 407
HpyF10VI GCNNNNNNNGC 1 cut(s) 230
HpyF3I CTNAG 1 cut(s) 35
HpySE526I ACGT 1 cut(s) 465
HspAI GCGC 1 cut(s) 433
Kzo9I GATC 4 cut(s) 170, 249, 327, 331
LpnPI CCDG 6 cut(s) 155, 174, 290, 405, 439, 441
LweI GCATC 2 cut(s) 55, 183
MaeI CTAG 1 cut(s) 149
MaeII ACGT 1 cut(s) 465
MalI GATC 4 cut(s) 172, 251, 329, 333
MboI GATC 4 cut(s) 170, 249, 327, 331
MboII GAAGA 2 cut(s) 103, 506
MlyI GAGTC 2 cut(s) 25, 392
MnlI CCTC 3 cut(s) 148, 215, 331
MroXI GAANNNNTTC 1 cut(s) 501
MseI TTAA 1 cut(s) 83
MspCI CTTAAG 1 cut(s) 82
Mva1269I GAATGC 1 cut(s) 301
MwoI GCNNNNNNNGC 1 cut(s) 230
NdeII GATC 4 cut(s) 170, 249, 327, 331
NlaIV GGNNCC 3 cut(s) 128, 159, 514
NsbI TGCGCA 1 cut(s) 434
NspV TTCGAA 1 cut(s) 260
PctI GAATGC 1 cut(s) 301
PdmI GAANNNNTTC 1 cut(s) 501
PfeI GAWTC 2 cut(s) 164, 257
PflFI GACNNNGTC 1 cut(s) 15
Ple19I CGATCG 1 cut(s) 334
PleI GAGTC 2 cut(s) 24, 391
PpsI GAGTC 2 cut(s) 24, 391
PspN4I GGNNCC 3 cut(s) 128, 159, 514
PsyI GACNNNGTC 1 cut(s) 15
PvuI CGATCG 1 cut(s) 334
RsaI GTAC 1 cut(s) 321
RsaNI GTAC 1 cut(s) 320
SaqAI TTAA 1 cut(s) 83
Sau3AI GATC 4 cut(s) 170, 249, 327, 331
SchI GAGTC 2 cut(s) 25, 392
SetI ASST 9 cut(s) 47, 83, 159, 220, 240, 379, 393, 430, 468
SfaNI GCATC 2 cut(s) 55, 183
SfuI TTCGAA 1 cut(s) 260
SmlI CTYRAG 1 cut(s) 82
SmoI CTYRAG 1 cut(s) 82
SspMI CTAG 1 cut(s) 149
TaaI ACNGT 2 cut(s) 57, 319
TaiI ACGT 1 cut(s) 468
TaqI TCGA 4 cut(s) 10, 252, 260, 330
TfiI GAWTC 2 cut(s) 164, 257
Tru1I TTAA 1 cut(s) 83
Tru9I TTAA 1 cut(s) 83
TspDTI ATGAA 1 cut(s) 38
TspGWI ACGGA 1 cut(s) 89
Tth111I GACNNNGTC 1 cut(s) 15
Vha464I CTTAAG 1 cut(s) 82
XmnI GAANNNNTTC 1 cut(s) 501
XspI CTAG 1 cut(s) 149
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.