FvH4_5g09330

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0011039
Physical Location & Seq
Reverse (-)
5379709 .. 5384524
4816 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g09330.t1

Sequence Viewer

Length: 657 bp
ATGGTGAGAATGATGAGAATGATGAACTGGGTGAGGCAGAGAGGGGTGGTTTCTATAGGGAGGAGATTGCATAGCTATGATGGGCCGAGTGAGAGCTTGAAGATGAAGATGGCGGAGTTGGAGAAGATGAGGAAGAGCAAGAGTAGGAGCTTCAAGAGACAAAAGAACCAAGTGTTTGTTGAGGTTCCGGAGTCTTTGTCCTATTTGGACACAGCCACCATGCCCATGTATCTCGCCGCTGCCGGAATGGCTCTCTTTGCTAAGCTCCTCATGATGTATGATGACTCAAGGTCGCAAGAATTGATTGAACGCAAGATAAGGAATGCTCCTGCCGATCAAGGCACTGTTCGGATGCTAAGTCGTGAGGAGTGGGAAGAAATTCGAGCAGAGAGGCCGAGGACTCCATTTGAATCCAAGCTTGCTCGTCCAAATGCACGTCTAAGAACTGGAGAACCAGTACGCATGGAGGATTTGAAAGATTGGACAATTGATGTGTTCACAGATGCATTTGCTCGGGCTGAAGAGAGTGTTAGACGCGGTTCCAGAACATGTAGCAAATTGCATGGTAAAGCCTTTGAACAATGTTGGCTTTCCAAAGGCGAAGATCACATTTTTGCCATCTTCATGGTCAAAGAAACCTGCTGGATCTGCTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

219

Amino Acids

25.58

Weight (kDa)

9.63

Isoelectric Point (pI)

57.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011039)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G04340
fragaria_vesca FvH4_5g09330 FvH4_5g09330 FvH4_5g09330
malus_domestica MD06G1132000.v1.1 MD14G1148400.v1.1
prunus_persica Prupe.5G143000_v2.0.a1
pyrus_communis pycom06g12360 pycom14g12310
rosa_chinensis RchiOBHm_Chr7g0188821
rosa_laevigata RLG00000004656
rosa_multiflora Rmu_ssc0000053.1_g000001
rosa_roxburghii Rroxscaffold_3G00265990
rosa_rugosa Rorug06G0494100 Rorug06G0494200
rosa_samantha Rh7AG099000 Rh7BG100700 Rh7CG102200 Rh7DG100800
rosa_wichuraiana Rw7G008530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 647
AccII CGCG 1 cut(s) 537
AccIII TCCGGA 1 cut(s) 187
AciI CCGC 3 cut(s) 113, 237, 537
AclWI GGATC 1 cut(s) 653
AcsI RAATTY 1 cut(s) 378
AcuI CTGAAG 1 cut(s) 540
AfaI GTAC 1 cut(s) 459
AflIII ACRYGT 1 cut(s) 548
AgsI TTSAA 6 cut(s) 100, 154, 308, 410, 475, 578
AhdI GACNNNNNGTC 1 cut(s) 289
AjiI CACGTC 1 cut(s) 437
AluBI AGCT 5 cut(s) 75, 96, 150, 265, 418
AluI AGCT 5 cut(s) 75, 96, 150, 265, 418
Alw26I GTCTC 1 cut(s) 151
AlwI GGATC 1 cut(s) 653
Ama87I CYCGRG 1 cut(s) 513
Aor13HI TCCGGA 1 cut(s) 187
AoxI GGCC 2 cut(s) 83, 392
ApeKI GCWGC 1 cut(s) 239
ApoI RAATTY 1 cut(s) 378
Asp700I GAANNNNTTC 1 cut(s) 378
AspS9I GGNCC 1 cut(s) 83
AsuHPI GGTGA 2 cut(s) 16, 43
AvaI CYCGRG 1 cut(s) 513
BbvI GCAGC 1 cut(s) 226
BccI CCATC 3 cut(s) 74, 103, 626
BcoDI GTCTC 1 cut(s) 151
BfmI CTRYAG 1 cut(s) 54
BfuAI ACCTGC 1 cut(s) 647
BglI GCCNNNNNGGC 1 cut(s) 248
BisI GCNGC 2 cut(s) 237, 240
BlpI GCTNAGC 1 cut(s) 261
BlsI GCNGC 2 cut(s) 238, 241
BmeRI GACNNNNNGTC 1 cut(s) 289
BmeT110I CYCGRG 1 cut(s) 513
BmgBI CACGTC 1 cut(s) 437
BmgT120I GGNCC 1 cut(s) 83
BmiI GGNNCC 2 cut(s) 186, 541
BmrI ACTGGG 1 cut(s) 37
BmsI GCATC 2 cut(s) 342, 493
BmuI ACTGGG 1 cut(s) 37
BpmI CTGGAG 1 cut(s) 468
Bpu1102I GCTNAGC 1 cut(s) 261
BpuEI CTTGAG 1 cut(s) 271
BsaJI CCNNGG 1 cut(s) 395
BsaWI WCCGGW 1 cut(s) 187
BsaXI ACNNNNNCTCC 4 cut(s) 182, 212, 441, 471
Bse1I ACTGG 3 cut(s) 32, 451, 455
BseAI TCCGGA 1 cut(s) 187
BseDI CCNNGG 1 cut(s) 395
BseGI GGATG 1 cut(s) 357
BseNI ACTGG 3 cut(s) 32, 451, 455
BseRI GAGGAG 3 cut(s) 76, 257, 380
BseXI GCAGC 1 cut(s) 226
Bsh1236I CGCG 1 cut(s) 537
BshFI GGCC 2 cut(s) 85, 394
BsiHKCI CYCGRG 1 cut(s) 513
BsiSI CCGG 2 cut(s) 188, 243
BsmAI GTCTC 1 cut(s) 151
BsmI GAATGC 1 cut(s) 328
BsnI GGCC 2 cut(s) 85, 394
BsoBI CYCGRG 1 cut(s) 513
Bsp13I TCCGGA 1 cut(s) 187
Bsp143I GATC 3 cut(s) 334, 604, 645
Bsp1720I GCTNAGC 1 cut(s) 261
BspACI CCGC 3 cut(s) 113, 237, 537
BspANI GGCC 2 cut(s) 85, 394
BspEI TCCGGA 1 cut(s) 187
BspFNI CGCG 1 cut(s) 537
BspHI TCATGA 1 cut(s) 270
BspLI GGNNCC 2 cut(s) 186, 541
BspMI ACCTGC 1 cut(s) 647
BspPI GGATC 1 cut(s) 653
BspQI GCTCTTC 1 cut(s) 128
BsrI ACTGG 3 cut(s) 32, 451, 455
BssECI CCNNGG 1 cut(s) 395
BssMI GATC 3 cut(s) 334, 604, 645
Bst4CI ACNGT 1 cut(s) 346
Bst6I CTCTTC 2 cut(s) 128, 516
BstC8I GCNNGC 1 cut(s) 420
BstDEI CTNAG 3 cut(s) 261, 356, 440
BstF5I GGATG 1 cut(s) 357
BstFNI CGCG 1 cut(s) 537
BstKTI GATC 3 cut(s) 337, 607, 648
BstMAI GTCTC 1 cut(s) 151
BstMBI GATC 3 cut(s) 334, 604, 645
BstMWI GCNNNNNNNGC 3 cut(s) 248, 257, 648
BstNSI RCATGY 1 cut(s) 552
BstSFI CTRYAG 1 cut(s) 54
BstUI CGCG 1 cut(s) 537
BstV1I GCAGC 1 cut(s) 226
BstX2I RGATCY 1 cut(s) 645
BstXI CCANNNNNNTGG 1 cut(s) 625
BstYI RGATCY 1 cut(s) 645
BsuRI GGCC 2 cut(s) 85, 394
BtrI CACGTC 1 cut(s) 437
BtsCI GGATG 1 cut(s) 357
BtsIMutI CAGTG 1 cut(s) 342
BveI ACCTGC 1 cut(s) 647
Cac8I GCNNGC 1 cut(s) 420
CciI TCATGA 1 cut(s) 270
Cfr13I GGNCC 1 cut(s) 83
CseI GACGC 1 cut(s) 543
Csp6I GTAC 1 cut(s) 458
CviAII CATG 7 cut(s) 220, 226, 271, 463, 549, 563, 625
CviQI GTAC 1 cut(s) 458
DdeI CTNAG 3 cut(s) 261, 356, 440
DpnI GATC 3 cut(s) 336, 606, 647
DpnII GATC 3 cut(s) 334, 604, 645
DriI GACNNNNNGTC 1 cut(s) 289
Eam1104I CTCTTC 2 cut(s) 128, 516
Eam1105I GACNNNNNGTC 1 cut(s) 289
EarI CTCTTC 2 cut(s) 128, 516
EciI GGCGGA 1 cut(s) 128
Eco57I CTGAAG 1 cut(s) 540
Eco88I CYCGRG 1 cut(s) 513
EcoT22I ATGCAT 1 cut(s) 508
FaeI CATG 7 cut(s) 223, 229, 274, 466, 552, 566, 628
FatI CATG 7 cut(s) 219, 225, 270, 462, 548, 562, 624
Fnu4HI GCNGC 2 cut(s) 237, 240
FokI GGATG 1 cut(s) 364
Fsp4HI GCNGC 2 cut(s) 237, 240
GluI GCNGC 2 cut(s) 237, 240
GsuI CTGGAG 1 cut(s) 468
HaeIII GGCC 2 cut(s) 85, 394
HapII CCGG 2 cut(s) 188, 243
HgaI GACGC 1 cut(s) 543
Hin1II CATG 7 cut(s) 223, 229, 274, 466, 552, 566, 628
HindIII AAGCTT 1 cut(s) 416
HinfI GANTC 4 cut(s) 191, 284, 400, 410
HpaII CCGG 2 cut(s) 188, 243
HphI GGTGA 2 cut(s) 16, 43
Hpy166II GTNNAC 1 cut(s) 498
Hpy188I TCNGA 2 cut(s) 351, 656
Hpy188III TCNNGA 5 cut(s) 154, 188, 271, 362, 543
Hpy8I GTNNAC 1 cut(s) 498
HpyCH4III ACNGT 1 cut(s) 346
HpyCH4IV ACGT 1 cut(s) 436
HpyCH4V TGCA 4 cut(s) 70, 434, 506, 562
HpyF10VI GCNNNNNNNGC 3 cut(s) 248, 257, 648
HpyF3I CTNAG 3 cut(s) 261, 356, 440
HpySE526I ACGT 1 cut(s) 436
Hsp92II CATG 7 cut(s) 223, 229, 274, 466, 552, 566, 628
Kpn2I TCCGGA 1 cut(s) 187
Kzo9I GATC 3 cut(s) 334, 604, 645
LguI GCTCTTC 1 cut(s) 128
LmnI GCTCC 3 cut(s) 147, 270, 331
LpnPI CCDG 9 cut(s) 13, 201, 256, 342, 432, 468, 556, 628, 652
Lsp1109I GCAGC 1 cut(s) 226
LweI GCATC 2 cut(s) 342, 493
MaeII ACGT 1 cut(s) 436
MalI GATC 3 cut(s) 336, 606, 647
MboI GATC 3 cut(s) 334, 604, 645
MboII GAAGA 8 cut(s) 112, 118, 136, 145, 386, 533, 613, 614
MfeI CAATTG 1 cut(s) 486
MflI RGATCY 1 cut(s) 645
MluCI AATT 4 cut(s) 299, 378, 486, 557
MlyI GAGTC 3 cut(s) 200, 278, 394
MmeI TCCRAC 1 cut(s) 99
Mph1103I ATGCAT 1 cut(s) 508
MroI TCCGGA 1 cut(s) 187
MroXI GAANNNNTTC 1 cut(s) 378
MslI CAYNNNNRTG 3 cut(s) 75, 224, 623
MspA1I CMGCKG 1 cut(s) 239
MspI CCGG 2 cut(s) 188, 243
MunI CAATTG 1 cut(s) 486
Mva1269I GAATGC 1 cut(s) 328
MvnI CGCG 1 cut(s) 537
MwoI GCNNNNNNNGC 3 cut(s) 248, 257, 648
NdeII GATC 3 cut(s) 334, 604, 645
NlaIII CATG 7 cut(s) 223, 229, 274, 466, 552, 566, 628
NlaIV GGNNCC 2 cut(s) 186, 541
NmeAIII GCCGAG 2 cut(s) 111, 420
NsiI ATGCAT 1 cut(s) 508
NspI RCATGY 1 cut(s) 552
PagI TCATGA 1 cut(s) 270
PciI ACATGT 1 cut(s) 548
PciSI GCTCTTC 1 cut(s) 128
PctI GAATGC 1 cut(s) 328
PdmI GAANNNNTTC 1 cut(s) 378
PfeI GAWTC 1 cut(s) 410
PkrI GCNGC 2 cut(s) 238, 241
PleI GAGTC 3 cut(s) 199, 278, 394
PpsI GAGTC 3 cut(s) 199, 278, 394
PscI ACATGT 1 cut(s) 548
PspN4I GGNNCC 2 cut(s) 186, 541
PspPI GGNCC 1 cut(s) 83
PsuI RGATCY 1 cut(s) 645
RsaI GTAC 1 cut(s) 459
RsaNI GTAC 1 cut(s) 458
RseI CAYNNNNRTG 3 cut(s) 75, 224, 623
SapI GCTCTTC 1 cut(s) 128
SatI GCNGC 2 cut(s) 237, 240
Sau3AI GATC 3 cut(s) 334, 604, 645
Sau96I GGNCC 1 cut(s) 83
SchI GAGTC 3 cut(s) 200, 278, 394
SetI ASST 9 cut(s) 77, 98, 152, 186, 267, 293, 420, 439, 641
SfaNI GCATC 2 cut(s) 342, 493
SfcI CTRYAG 1 cut(s) 54
SmiMI CAYNNNNRTG 3 cut(s) 75, 224, 623
SmlI CTYRAG 1 cut(s) 286
SmoI CTYRAG 1 cut(s) 286
Sse9I AATT 4 cut(s) 299, 378, 486, 557
SsiI CCGC 3 cut(s) 113, 237, 537
TaaI ACNGT 1 cut(s) 346
TaiI ACGT 1 cut(s) 439
TaqI TCGA 1 cut(s) 382
TasI AATT 4 cut(s) 299, 378, 486, 557
TauI GCSGC 1 cut(s) 239
TfiI GAWTC 1 cut(s) 410
TscAI CASTG 1 cut(s) 349
TseI GCWGC 1 cut(s) 239
TspDTI ATGAA 3 cut(s) 38, 119, 613
TspRI CASTG 1 cut(s) 349
XapI RAATTY 1 cut(s) 378
XceI RCATGY 1 cut(s) 552
XmnI GAANNNNTTC 1 cut(s) 378
Zsp2I ATGCAT 1 cut(s) 508
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.