MD14G1148400.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
OG0011039
Physical Location & Seq
Forward (+)
24099195 .. 24102062
2868 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1148400.v1.1.491

Sequence Viewer

Length: 528 bp
ATGAATTGGGTGAGGCAGAGAGTTCTGGTTTCAATTGGGAGGCAGAGGCAGCTGCATACTTTCGATGCGCCGAGCGAAAGCTTGAAGACGAAATTTGCTGAGTTGGGGAAAATGAGGAGGAGAAGAAGCTCAAAGAAAGATAAGCAATCGGTTTTCGTCGAGGTTCCAGAGTCGATGACCTACCTCGACACAGCCACCATGCCCCAGATTCTCACCGCCGTTGGCATTGCCCTCTTCGCCAAGCTCCTCATGATGTACGACGACTCAAGGTCACAAGAATTGATTGAACGCAAAATAAAGAATGCTCCTGCTGGGCAAGGCACTGTTAGGATGCTCTCCCGAGAGGAATGGGAAGAAATTCGCGAAGTAAGACCAAGGACTCCGTTTGAATCCAAGCTTGCTCGTCCAAATGCACACTTAAGAACTGGAGAACCATTACGCATGGAGGATTTAAAGGATTGGACGATTGATGTGCTCACAGATGCATTTGCTCGGGTTGAAGAAAGTGTTAGACACACTTCCAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

176

Amino Acids

20.36

Weight (kDa)

9.86

Isoelectric Point (pI)

66.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011039)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G04340
fragaria_vesca FvH4_5g09330 FvH4_5g09330 FvH4_5g09330
malus_domestica MD06G1132000.v1.1 MD14G1148400.v1.1
prunus_persica Prupe.5G143000_v2.0.a1
pyrus_communis pycom06g12360 pycom14g12310
rosa_chinensis RchiOBHm_Chr7g0188821
rosa_laevigata RLG00000004656
rosa_multiflora Rmu_ssc0000053.1_g000001
rosa_roxburghii Rroxscaffold_3G00265990
rosa_rugosa Rorug06G0494100 Rorug06G0494200
rosa_samantha Rh7AG099000 Rh7BG100700 Rh7CG102200 Rh7DG100800
rosa_wichuraiana Rw7G008530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 363
AciI CCGC 1 cut(s) 216
AcsI RAATTY 2 cut(s) 92, 357
AfaI GTAC 1 cut(s) 257
AflII CTTAAG 1 cut(s) 418
AgsI TTSAA 5 cut(s) 33, 85, 287, 389, 500
AhdI GACNNNNNGTC 1 cut(s) 268
AluBI AGCT 5 cut(s) 52, 81, 129, 244, 397
AluI AGCT 5 cut(s) 52, 81, 129, 244, 397
Alw21I GWGCWC 1 cut(s) 477
Ama87I CYCGRG 2 cut(s) 339, 492
ApeKI GCWGC 2 cut(s) 49, 52
ApoI RAATTY 2 cut(s) 92, 357
Asp700I GAANNNNTTC 1 cut(s) 357
AspLEI GCGC 1 cut(s) 70
AsuHPI GGTGA 2 cut(s) 22, 205
AvaI CYCGRG 2 cut(s) 339, 492
BbsI GAAGAC 1 cut(s) 92
Bbv12I GWGCWC 1 cut(s) 477
BbvI GCAGC 2 cut(s) 39, 61
BceAI ACGGC 1 cut(s) 203
BcgI CGANNNNNNTGC 2 cut(s) 454, 488
BfrI CTTAAG 1 cut(s) 418
BisI GCNGC 2 cut(s) 50, 53
BlsI GCNGC 2 cut(s) 51, 54
BmeRI GACNNNNNGTC 1 cut(s) 268
BmeT110I CYCGRG 2 cut(s) 339, 492
BmiI GGNNCC 1 cut(s) 165
BmsI GCATC 3 cut(s) 55, 321, 472
BpiI GAAGAC 1 cut(s) 92
BpmI CTGGAG 1 cut(s) 447
BpuEI CTTGAG 1 cut(s) 250
BsaJI CCNNGG 1 cut(s) 374
Bse1I ACTGG 1 cut(s) 430
Bse3DI GCAATG 1 cut(s) 225
BseDI CCNNGG 1 cut(s) 374
BseGI GGATG 1 cut(s) 336
BseMI GCAATG 1 cut(s) 225
BseMII CTCAG 1 cut(s) 90
BseNI ACTGG 1 cut(s) 430
BseRI GAGGAG 3 cut(s) 130, 133, 236
BseXI GCAGC 2 cut(s) 39, 61
BseYI CCCAGC 1 cut(s) 311
Bsh1236I CGCG 1 cut(s) 363
BsiHKAI GWGCWC 1 cut(s) 477
BsiHKCI CYCGRG 2 cut(s) 339, 492
BsmI GAATGC 1 cut(s) 307
BsoBI CYCGRG 2 cut(s) 339, 492
Bsp1286I GDGCHC 1 cut(s) 477
Bsp68I TCGCGA 1 cut(s) 363
BspACI CCGC 1 cut(s) 216
BspCNI CTCAG 1 cut(s) 91
BspFNI CGCG 1 cut(s) 363
BspHI TCATGA 1 cut(s) 249
BspLI GGNNCC 1 cut(s) 165
BspTI CTTAAG 1 cut(s) 418
BsrDI GCAATG 1 cut(s) 225
BsrI ACTGG 1 cut(s) 430
BssECI CCNNGG 1 cut(s) 374
BssT1I CCWWGG 1 cut(s) 374
Bst4CI ACNGT 1 cut(s) 325
Bst6I CTCTTC 1 cut(s) 239
BstAFI CTTAAG 1 cut(s) 418
BstC8I GCNNGC 1 cut(s) 399
BstDEI CTNAG 1 cut(s) 99
BstF5I GGATG 1 cut(s) 336
BstFNI CGCG 1 cut(s) 363
BstHHI GCGC 1 cut(s) 70
BstMWI GCNNNNNNNGC 2 cut(s) 49, 236
BstUI CGCG 1 cut(s) 363
BstV1I GCAGC 2 cut(s) 39, 61
BstV2I GAAGAC 1 cut(s) 92
BtsCI GGATG 1 cut(s) 336
BtsIMutI CAGTG 1 cut(s) 321
BtuMI TCGCGA 1 cut(s) 363
Cac8I GCNNGC 1 cut(s) 399
CciI TCATGA 1 cut(s) 249
CfoI GCGC 1 cut(s) 70
Csp6I GTAC 1 cut(s) 256
CviAII CATG 3 cut(s) 199, 250, 442
CviJI RGCY 6 cut(s) 52, 81, 129, 194, 244, 397
CviKI_1 RGCY 6 cut(s) 52, 81, 129, 194, 244, 397
CviQI GTAC 1 cut(s) 256
DdeI CTNAG 1 cut(s) 99
DraI TTTAAA 1 cut(s) 453
DriI GACNNNNNGTC 1 cut(s) 268
Eam1104I CTCTTC 1 cut(s) 239
Eam1105I GACNNNNNGTC 1 cut(s) 268
EarI CTCTTC 1 cut(s) 239
Eco130I CCWWGG 1 cut(s) 374
Eco88I CYCGRG 2 cut(s) 339, 492
EcoT14I CCWWGG 1 cut(s) 374
EcoT22I ATGCAT 1 cut(s) 487
ErhI CCWWGG 1 cut(s) 374
FaeI CATG 3 cut(s) 202, 253, 445
FaiI YATR 4 cut(s) 57, 200, 251, 443
FatI CATG 3 cut(s) 198, 249, 441
Fnu4HI GCNGC 2 cut(s) 50, 53
FokI GGATG 1 cut(s) 343
Fsp4HI GCNGC 2 cut(s) 50, 53
GlaI GCGC 1 cut(s) 69
GluI GCNGC 2 cut(s) 50, 53
GsaI CCCAGC 1 cut(s) 315
GsuI CTGGAG 1 cut(s) 447
HhaI GCGC 1 cut(s) 70
Hin1II CATG 3 cut(s) 202, 253, 445
Hin6I GCGC 1 cut(s) 68
HinP1I GCGC 1 cut(s) 68
HindIII AAGCTT 2 cut(s) 79, 395
HinfI GANTC 5 cut(s) 170, 208, 263, 379, 389
HphI GGTGA 2 cut(s) 22, 205
Hpy188III TCNNGA 4 cut(s) 167, 250, 339, 362
Hpy99I CGWCG 2 cut(s) 161, 263
HpyCH4III ACNGT 1 cut(s) 325
HpyCH4V TGCA 3 cut(s) 55, 413, 485
HpyF10VI GCNNNNNNNGC 2 cut(s) 49, 236
HpyF3I CTNAG 1 cut(s) 99
Hsp92II CATG 3 cut(s) 202, 253, 445
HspAI GCGC 1 cut(s) 68
LmnI GCTCC 2 cut(s) 249, 310
LpnPI CCDG 6 cut(s) 11, 180, 218, 297, 321, 411
Lsp1109I GCAGC 2 cut(s) 39, 61
LweI GCATC 3 cut(s) 55, 321, 472
MaeIII GTNAC 1 cut(s) 270
MboII GAAGA 5 cut(s) 97, 135, 226, 365, 512
MfeI CAATTG 1 cut(s) 33
MhlI GDGCHC 1 cut(s) 477
MluCI AATT 5 cut(s) 4, 33, 92, 278, 357
MlyI GAGTC 3 cut(s) 179, 257, 373
Mph1103I ATGCAT 1 cut(s) 487
MroXI GAANNNNTTC 1 cut(s) 357
MseI TTAA 2 cut(s) 419, 452
MspA1I CMGCKG 1 cut(s) 52
MspCI CTTAAG 1 cut(s) 418
MunI CAATTG 1 cut(s) 33
Mva1269I GAATGC 1 cut(s) 307
MvnI CGCG 1 cut(s) 363
MwoI GCNNNNNNNGC 2 cut(s) 49, 236
NlaIII CATG 3 cut(s) 202, 253, 445
NlaIV GGNNCC 1 cut(s) 165
NmeAIII GCCGAG 1 cut(s) 96
NmuCI GTSAC 1 cut(s) 270
NruI TCGCGA 1 cut(s) 363
NsiI ATGCAT 1 cut(s) 487
PagI TCATGA 1 cut(s) 249
PctI GAATGC 1 cut(s) 307
PdmI GAANNNNTTC 1 cut(s) 357
PfeI GAWTC 2 cut(s) 208, 389
PkrI GCNGC 2 cut(s) 51, 54
PleI GAGTC 3 cut(s) 178, 257, 373
PpsI GAGTC 3 cut(s) 178, 257, 373
PspFI CCCAGC 1 cut(s) 311
PspN4I GGNNCC 1 cut(s) 165
PvuII CAGCTG 1 cut(s) 52
RruI TCGCGA 1 cut(s) 363
RsaI GTAC 1 cut(s) 257
RsaNI GTAC 1 cut(s) 256
SaqAI TTAA 2 cut(s) 419, 452
SatI GCNGC 2 cut(s) 50, 53
SchI GAGTC 3 cut(s) 179, 257, 373
SduI GDGCHC 1 cut(s) 477
SetI ASST 9 cut(s) 54, 83, 131, 165, 182, 186, 246, 272, 399
SfaNI GCATC 3 cut(s) 55, 321, 472
SmlI CTYRAG 2 cut(s) 265, 418
SmoI CTYRAG 2 cut(s) 265, 418
Sse9I AATT 5 cut(s) 4, 33, 92, 278, 357
SsiI CCGC 1 cut(s) 216
StyI CCWWGG 1 cut(s) 374
TaaI ACNGT 1 cut(s) 325
TaqI TCGA 4 cut(s) 63, 159, 173, 186
TasI AATT 5 cut(s) 4, 33, 92, 278, 357
TfiI GAWTC 2 cut(s) 208, 389
Tru1I TTAA 2 cut(s) 419, 452
Tru9I TTAA 2 cut(s) 419, 452
TscAI CASTG 1 cut(s) 328
TseFI GTSAC 1 cut(s) 270
TseI GCWGC 2 cut(s) 49, 52
Tsp45I GTSAC 1 cut(s) 270
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 372
TspRI CASTG 1 cut(s) 328
Vha464I CTTAAG 1 cut(s) 418
XapI RAATTY 2 cut(s) 92, 357
XmnI GAANNNNTTC 1 cut(s) 357
Zsp2I ATGCAT 1 cut(s) 487
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.