Rorug06G0494200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0011039
Physical Location & Seq
Reverse (-)
61131461 .. 61132429
969 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0494200.1

Sequence Viewer

Length: 573 bp
ATGGAGTCGAGCCAAAGGGAACCTCCTCAGGGGCTAACCTCCGAGGAACTTTCCGAGCTTGAGCCCCTCATTGGCACCTACCACAAATTCGACCCCTCCCCCAACACATGCACGTCCCTAATCACGCAACGAATCGAAGCTCCGACCGGACTCGTCTGGCCCTTAGTTAGGAGCTTCGACAACCCCCAAAAGTACAAGCACTTCATCAAAAGTTGCAACATGAGCGGCGACGGTGGCGTCGGCAGTATAAGGGAGGTCACCGTGGTCTCGGGCCTCCCAGCGTCCACGAGCACCGAGAGGCTCGAGATACTGGATGATGACAAGCACGTGCTGAGCTTTCGGGTCGTCGGAGGCGAGCACAGGCTCAACAACTACAAGTCAGTCACTTCGGTGAACGAGTTCGAGAAAGACGGCAAGGTTTACTCGGTGGTTTTGGAGTCGTATGTGGTTGATATCCCGGAAGGAAATACCGGAGAGGATACGAAGATGTTTGTGGACACTGTGATCAAGTTGAACCTGCAAAAGCTTGCTGTGGTGGCCATGGCAAATCTGCATGGCGGTGGACATGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

190

Amino Acids

20.91

Weight (kDa)

5.16

Isoelectric Point (pI)

40.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Polyketide_cyc2 PF10604 42 - 177 8.6e-12 Polyketide cyclase / dehydrase and lipid transport
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011039)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G04340
fragaria_vesca FvH4_5g09330 FvH4_5g09330 FvH4_5g09330
malus_domestica MD06G1132000.v1.1 MD14G1148400.v1.1
prunus_persica Prupe.5G143000_v2.0.a1
pyrus_communis pycom06g12360 pycom14g12310
rosa_chinensis RchiOBHm_Chr7g0188821
rosa_laevigata RLG00000004656
rosa_multiflora Rmu_ssc0000053.1_g000001
rosa_roxburghii Rroxscaffold_3G00265990
rosa_rugosa Rorug06G0494100 Rorug06G0494200
rosa_samantha Rh7AG099000 Rh7BG100700 Rh7CG102200 Rh7DG100800
rosa_wichuraiana Rw7G008530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 236
Acc36I ACCTGC 1 cut(s) 525
AccB1I GGYRCC 1 cut(s) 74
AccBSI CCGCTC 1 cut(s) 225
AciI CCGC 2 cut(s) 225, 558
AcoI YGGCCR 1 cut(s) 537
AcsI RAATTY 1 cut(s) 86
AcvI CACGTG 1 cut(s) 328
AcyI GRCGYC 1 cut(s) 237
AfaI GTAC 1 cut(s) 194
AfiI CCNNNNNNNGG 3 cut(s) 29, 71, 168
AgsI TTSAA 1 cut(s) 514
AjiI CACGTC 1 cut(s) 114
AleI CACNNNNGTG 1 cut(s) 389
AluBI AGCT 5 cut(s) 58, 140, 174, 336, 526
AluI AGCT 5 cut(s) 58, 140, 174, 336, 526
Alw21I GWGCWC 2 cut(s) 293, 360
Alw26I GTCTC 1 cut(s) 271
Ama87I CYCGRG 2 cut(s) 268, 302
AoxI GGCC 3 cut(s) 158, 271, 537
ApoI RAATTY 1 cut(s) 86
Asp700I GAANNNNTTC 1 cut(s) 398
AspS9I GGNCC 2 cut(s) 159, 271
AsuC2I CCSGG 1 cut(s) 458
AsuHPI GGTGA 2 cut(s) 250, 403
AvaI CYCGRG 2 cut(s) 268, 302
AxyI CCTNAGG 1 cut(s) 27
BalI TGGCCA 1 cut(s) 539
BanI GGYRCC 1 cut(s) 74
BanII GRGCYC 1 cut(s) 66
BarI GAAGNNNNNNTAC 2 cut(s) 185, 217
BauI CACGAG 1 cut(s) 286
BbrPI CACGTG 1 cut(s) 328
Bbv12I GWGCWC 2 cut(s) 293, 360
BceAI ACGGC 1 cut(s) 427
BciVI GTATCC 1 cut(s) 472
BclI TGATCA 1 cut(s) 504
BcnI CCSGG 1 cut(s) 458
BcoDI GTCTC 1 cut(s) 271
BfuAI ACCTGC 1 cut(s) 525
BfuI GTATCC 1 cut(s) 472
BisI GCNGC 1 cut(s) 226
BlpI GCTNAGC 1 cut(s) 332
BlsI GCNGC 1 cut(s) 227
Bme1390I CCNGG 1 cut(s) 458
BmeT110I CYCGRG 2 cut(s) 268, 302
BmgBI CACGTC 1 cut(s) 114
BmgT120I GGNCC 2 cut(s) 159, 271
BmiI GGNNCC 2 cut(s) 21, 76
BmrFI CCNGG 1 cut(s) 458
Bpu1102I GCTNAGC 1 cut(s) 332
BpuEI CTTGAG 1 cut(s) 80
BpuMI CCSGG 1 cut(s) 458
BsaAI YACGTR 1 cut(s) 328
BsaHI GRCGYC 1 cut(s) 237
BsaI GGTCTC 1 cut(s) 271
BsaJI CCNNGG 3 cut(s) 42, 261, 540
BsaWI WCCGGW 2 cut(s) 146, 470
Bsc4I CCNNNNNNNGG 3 cut(s) 29, 71, 168
Bse1I ACTGG 1 cut(s) 315
Bse21I CCTNAGG 1 cut(s) 27
BseDI CCNNGG 3 cut(s) 42, 261, 540
BseGI GGATG 1 cut(s) 319
BseLI CCNNNNNNNGG 3 cut(s) 29, 71, 168
BseMII CTCAG 2 cut(s) 41, 323
BseNI ACTGG 1 cut(s) 315
BseRI GAGGAG 1 cut(s) 15
BseYI CCCAGC 1 cut(s) 277
Bsh1285I CGRYCG 1 cut(s) 147
BshFI GGCC 3 cut(s) 160, 273, 539
BshNI GGYRCC 1 cut(s) 74
BsiEI CGRYCG 1 cut(s) 147
BsiHKAI GWGCWC 2 cut(s) 293, 360
BsiHKCI CYCGRG 2 cut(s) 268, 302
BsiSI CCGG 3 cut(s) 147, 458, 471
BslFI GGGAC 1 cut(s) 100
BslI CCNNNNNNNGG 3 cut(s) 29, 71, 168
BsmAI GTCTC 1 cut(s) 271
BsmFI GGGAC 1 cut(s) 100
BsnI GGCC 3 cut(s) 160, 273, 539
Bso31I GGTCTC 1 cut(s) 271
BsoBI CYCGRG 2 cut(s) 268, 302
Bsp1286I GDGCHC 3 cut(s) 66, 293, 360
Bsp143I GATC 1 cut(s) 504
Bsp1720I GCTNAGC 1 cut(s) 332
Bsp19I CCATGG 1 cut(s) 540
BspACI CCGC 2 cut(s) 225, 558
BspANI GGCC 3 cut(s) 160, 273, 539
BspCNI CTCAG 2 cut(s) 40, 324
BspLI GGNNCC 2 cut(s) 21, 76
BspMI ACCTGC 1 cut(s) 525
BspT107I GGYRCC 1 cut(s) 74
BspTNI GGTCTC 1 cut(s) 271
BsrBI CCGCTC 1 cut(s) 225
BsrI ACTGG 1 cut(s) 315
BssECI CCNNGG 3 cut(s) 42, 261, 540
BssMI GATC 1 cut(s) 504
BssNI GRCGYC 1 cut(s) 237
BssSI CACGAG 1 cut(s) 286
BssT1I CCWWGG 1 cut(s) 540
Bst2BI CACGAG 1 cut(s) 286
Bst4CI ACNGT 3 cut(s) 233, 262, 502
BstACI GRCGYC 1 cut(s) 237
BstBAI YACGTR 1 cut(s) 328
BstC8I GCNNGC 2 cut(s) 356, 528
BstDEI CTNAG 3 cut(s) 27, 163, 332
BstDSI CCRYGG 2 cut(s) 261, 540
BstEII GGTNACC 1 cut(s) 256
BstENI CCTNNNNNAGG 1 cut(s) 166
BstF5I GGATG 1 cut(s) 319
BstKTI GATC 1 cut(s) 507
BstMAI GTCTC 1 cut(s) 271
BstMBI GATC 1 cut(s) 504
BstMCI CGRYCG 1 cut(s) 147
BstMWI GCNNNNNNNGC 3 cut(s) 222, 234, 536
BstNSI RCATGY 1 cut(s) 111
BstPI GGTNACC 1 cut(s) 256
BstSCI CCNGG 1 cut(s) 456
Bsu36I CCTNAGG 1 cut(s) 27
BsuI GTATCC 1 cut(s) 472
BsuRI GGCC 3 cut(s) 160, 273, 539
BtgI CCRYGG 2 cut(s) 261, 540
BtrI CACGTC 1 cut(s) 114
BtsCI GGATG 1 cut(s) 319
BtsIMutI CAGTG 1 cut(s) 498
BveI ACCTGC 1 cut(s) 525
Cac8I GCNNGC 2 cut(s) 356, 528
Cfr13I GGNCC 2 cut(s) 159, 271
CseI GACGC 2 cut(s) 226, 270
Csp6I GTAC 1 cut(s) 193
CviAII CATG 5 cut(s) 108, 220, 541, 554, 566
CviQI GTAC 1 cut(s) 193
DdeI CTNAG 3 cut(s) 27, 163, 332
DpnI GATC 1 cut(s) 506
DpnII GATC 1 cut(s) 504
DrdI GACNNNNNNGTC 1 cut(s) 236
DseDI GACNNNNNNGTC 1 cut(s) 236
EaeI YGGCCR 1 cut(s) 537
Eco130I CCWWGG 1 cut(s) 540
Eco24I GRGCYC 1 cut(s) 66
Eco31I GGTCTC 1 cut(s) 271
Eco32I GATATC 1 cut(s) 454
Eco72I CACGTG 1 cut(s) 328
Eco81I CCTNAGG 1 cut(s) 27
Eco88I CYCGRG 2 cut(s) 268, 302
Eco91I GGTNACC 1 cut(s) 256
EcoNI CCTNNNNNAGG 1 cut(s) 166
EcoO65I GGTNACC 1 cut(s) 256
EcoRV GATATC 1 cut(s) 454
EcoT14I CCWWGG 1 cut(s) 540
EcoT38I GRGCYC 1 cut(s) 66
ErhI CCWWGG 1 cut(s) 540
FaeI CATG 5 cut(s) 111, 223, 544, 557, 569
FaiI YATR 7 cut(s) 109, 221, 248, 444, 542, 555, 567
FaqI GGGAC 1 cut(s) 100
FatI CATG 5 cut(s) 107, 219, 540, 553, 565
FbaI TGATCA 1 cut(s) 504
Fnu4HI GCNGC 1 cut(s) 226
FokI GGATG 1 cut(s) 326
FriOI GRGCYC 1 cut(s) 66
Fsp4HI GCNGC 1 cut(s) 226
GluI GCNGC 1 cut(s) 226
GsaI CCCAGC 1 cut(s) 281
HaeIII GGCC 3 cut(s) 160, 273, 539
HapII CCGG 3 cut(s) 147, 458, 471
HgaI GACGC 2 cut(s) 226, 270
Hin1I GRCGYC 1 cut(s) 237
Hin1II CATG 5 cut(s) 111, 223, 544, 557, 569
HindIII AAGCTT 1 cut(s) 524
HinfI GANTC 4 cut(s) 5, 132, 150, 437
HpaII CCGG 3 cut(s) 147, 458, 471
HphI GGTGA 2 cut(s) 250, 403
Hpy166II GTNNAC 5 cut(s) 285, 394, 421, 496, 563
Hpy188I TCNGA 4 cut(s) 43, 55, 144, 350
Hpy188III TCNNGA 2 cut(s) 304, 403
Hpy8I GTNNAC 5 cut(s) 285, 394, 421, 496, 563
Hpy99I CGWCG 3 cut(s) 233, 242, 350
HpyAV CCTTC 1 cut(s) 455
HpyCH4III ACNGT 3 cut(s) 233, 262, 502
HpyCH4IV ACGT 2 cut(s) 113, 327
HpyCH4V TGCA 4 cut(s) 111, 216, 520, 553
HpyF10VI GCNNNNNNNGC 3 cut(s) 222, 234, 536
HpyF3I CTNAG 3 cut(s) 27, 163, 332
HpySE526I ACGT 2 cut(s) 113, 327
Hsp92I GRCGYC 1 cut(s) 237
Hsp92II CATG 5 cut(s) 111, 223, 544, 557, 569
Ksp22I TGATCA 1 cut(s) 504
Kzo9I GATC 1 cut(s) 504
LmnI GCTCC 2 cut(s) 145, 171
LpnPI CCDG 9 cut(s) 14, 142, 160, 291, 296, 346, 471, 484, 530
MaeII ACGT 2 cut(s) 113, 327
MaeIII GTNAC 2 cut(s) 256, 382
MalI GATC 1 cut(s) 506
MbiI CCGCTC 1 cut(s) 225
MboI GATC 1 cut(s) 504
MboII GAAGA 1 cut(s) 496
MhlI GDGCHC 3 cut(s) 66, 293, 360
MlsI TGGCCA 1 cut(s) 539
MluCI AATT 1 cut(s) 86
MluNI TGGCCA 1 cut(s) 539
MlyI GAGTC 3 cut(s) 14, 144, 446
MmeI TCCRAC 2 cut(s) 167, 328
Mox20I TGGCCA 1 cut(s) 539
MroXI GAANNNNTTC 1 cut(s) 398
MscI TGGCCA 1 cut(s) 539
MslI CAYNNNNRTG 2 cut(s) 389, 558
Msp20I TGGCCA 1 cut(s) 539
MspI CCGG 3 cut(s) 147, 458, 471
MspR9I CCNGG 1 cut(s) 458
MwoI GCNNNNNNNGC 3 cut(s) 222, 234, 536
NciI CCSGG 1 cut(s) 458
NcoI CCATGG 1 cut(s) 540
NdeII GATC 1 cut(s) 504
NlaIII CATG 5 cut(s) 111, 223, 544, 557, 569
NlaIV GGNNCC 2 cut(s) 21, 76
NmuCI GTSAC 2 cut(s) 256, 382
NspI RCATGY 1 cut(s) 111
OliI CACNNNNGTG 1 cut(s) 389
PaeR7I CTCGAG 1 cut(s) 302
PcsI WCGNNNNNNNCGW 1 cut(s) 351
PdmI GAANNNNTTC 1 cut(s) 398
PfeI GAWTC 1 cut(s) 132
PfoI TCCNGGA 1 cut(s) 456
PkrI GCNGC 1 cut(s) 227
PleI GAGTC 3 cut(s) 13, 144, 445
PmaCI CACGTG 1 cut(s) 328
PmlI CACGTG 1 cut(s) 328
PpsI GAGTC 3 cut(s) 13, 144, 445
Ppu21I YACGTR 1 cut(s) 328
PspCI CACGTG 1 cut(s) 328
PspEI GGTNACC 1 cut(s) 256
PspFI CCCAGC 1 cut(s) 277
PspN4I GGNNCC 2 cut(s) 21, 76
PspPI GGNCC 2 cut(s) 159, 271
RsaI GTAC 1 cut(s) 194
RsaNI GTAC 1 cut(s) 193
RseI CAYNNNNRTG 2 cut(s) 389, 558
SatI GCNGC 1 cut(s) 226
Sau3AI GATC 1 cut(s) 504
Sau96I GGNCC 2 cut(s) 159, 271
SchI GAGTC 3 cut(s) 14, 144, 446
ScrFI CCNGG 1 cut(s) 458
SduI GDGCHC 3 cut(s) 66, 293, 360
Sfr274I CTCGAG 1 cut(s) 302
SlaI CTCGAG 1 cut(s) 302
SmiMI CAYNNNNRTG 2 cut(s) 389, 558
SmlI CTYRAG 2 cut(s) 59, 302
SmoI CTYRAG 2 cut(s) 59, 302
Sse9I AATT 1 cut(s) 86
SsiI CCGC 2 cut(s) 225, 558
StyD4I CCNGG 1 cut(s) 456
StyI CCWWGG 1 cut(s) 540
TaaI ACNGT 3 cut(s) 233, 262, 502
TaiI ACGT 2 cut(s) 116, 330
TaqI TCGA 6 cut(s) 8, 90, 135, 177, 303, 402
TasI AATT 1 cut(s) 86
TatI WGTACW 1 cut(s) 192
TauI GCSGC 1 cut(s) 228
TfiI GAWTC 1 cut(s) 132
TscAI CASTG 1 cut(s) 505
TseFI GTSAC 2 cut(s) 256, 382
Tsp45I GTSAC 2 cut(s) 256, 382
TspDTI ATGAA 1 cut(s) 193
TspRI CASTG 1 cut(s) 505
XagI CCTNNNNNAGG 1 cut(s) 166
XapI RAATTY 1 cut(s) 86
XceI RCATGY 1 cut(s) 111
XhoI CTCGAG 1 cut(s) 302
XmnI GAANNNNTTC 1 cut(s) 398
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.