MD06G1132000.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0011039
Physical Location & Seq
Forward (+)
27583460 .. 27586083
2624 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1132000.v1.1.491

Sequence Viewer

Length: 537 bp
ATGAACTGGGTGAGGCAGAGAGTGCTGTGGTCAGTTGGGAGGCAGGGGCAGAGGCGTTTGCTGCATACTTACGATGCGCCGAGCGAAAGCTTGAAGATGAAGATTGCAGAGTTGGGGAAAATGAGGAGGAGGAGAAGCTCAAAGAAAGATAAACATTCGGTGTTCGTCGAGGTTCCGGAGTCCATGACCTACCTCGACACAGCCACAATGCCCCAGATTCTCACTGCAGTTGGCATTGCCCTCTTCGCCAAGCTCCTCATGATGTACGATGACTCAAGGTCCCAAGAATTGATTGAACGCAAAATAAAGAATGCTCCTGCTGAGCAAGGCACTGTTAGGATGCTTTCCCGAGAGGAATGGGAAGAAATTCGTGAAGTAAGACCGAGGACTCCATTTGAATCCAAACTTGCTCGTCCAAATGCACGCTTAAGAACTGGAGAACCATTACGCATGGAGGATGTGAAGGATTGGACGATAGATGTGCTGACAGATGCATTTGCTCGGGTTGAAGAAAGCGTTAGACACACTTCCAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

179

Amino Acids

20.86

Weight (kDa)

9.92

Isoelectric Point (pI)

68.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011039)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G04340
fragaria_vesca FvH4_5g09330 FvH4_5g09330 FvH4_5g09330
malus_domestica MD06G1132000.v1.1 MD14G1148400.v1.1
prunus_persica Prupe.5G143000_v2.0.a1
pyrus_communis pycom06g12360 pycom14g12310
rosa_chinensis RchiOBHm_Chr7g0188821
rosa_laevigata RLG00000004656
rosa_multiflora Rmu_ssc0000053.1_g000001
rosa_roxburghii Rroxscaffold_3G00265990
rosa_rugosa Rorug06G0494100 Rorug06G0494200
rosa_samantha Rh7AG099000 Rh7BG100700 Rh7CG102200 Rh7DG100800
rosa_wichuraiana Rw7G008530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 175
AcsI RAATTY 1 cut(s) 366
AfaI GTAC 1 cut(s) 266
AflII CTTAAG 1 cut(s) 427
AgsI TTSAA 4 cut(s) 94, 296, 398, 509
AhdI GACNNNNNGTC 1 cut(s) 277
AluBI AGCT 3 cut(s) 90, 138, 253
AluI AGCT 3 cut(s) 90, 138, 253
Ama87I CYCGRG 2 cut(s) 348, 501
Aor13HI TCCGGA 1 cut(s) 175
ApeKI GCWGC 1 cut(s) 61
ApoI RAATTY 1 cut(s) 366
Asp700I GAANNNNTTC 1 cut(s) 366
AspLEI GCGC 1 cut(s) 79
AspS9I GGNCC 1 cut(s) 279
AsuHPI GGTGA 1 cut(s) 22
AvaI CYCGRG 2 cut(s) 348, 501
AvaII GGWCC 1 cut(s) 279
BbvI GCAGC 1 cut(s) 48
BcgI CGANNNNNNTGC 2 cut(s) 463, 497
BfmI CTRYAG 1 cut(s) 225
BfrI CTTAAG 1 cut(s) 427
BisI GCNGC 1 cut(s) 62
BlpI GCTNAGC 1 cut(s) 321
BlsI GCNGC 1 cut(s) 63
Bme18I GGWCC 1 cut(s) 279
BmeRI GACNNNNNGTC 1 cut(s) 277
BmeT110I CYCGRG 2 cut(s) 348, 501
BmgT120I GGNCC 1 cut(s) 279
BmiI GGNNCC 2 cut(s) 174, 281
BmrI ACTGGG 1 cut(s) 16
BmsI GCATC 3 cut(s) 64, 330, 481
BmuI ACTGGG 1 cut(s) 16
BpmI CTGGAG 1 cut(s) 456
Bpu1102I GCTNAGC 1 cut(s) 321
BpuEI CTTGAG 1 cut(s) 259
BsaJI CCNNGG 1 cut(s) 383
BsaWI WCCGGW 1 cut(s) 175
Bse1I ACTGG 2 cut(s) 11, 439
Bse3DI GCAATG 1 cut(s) 234
BseAI TCCGGA 1 cut(s) 175
BseDI CCNNGG 1 cut(s) 383
BseGI GGATG 2 cut(s) 345, 463
BseMI GCAATG 1 cut(s) 234
BseMII CTCAG 1 cut(s) 312
BseNI ACTGG 2 cut(s) 11, 439
BseRI GAGGAG 4 cut(s) 139, 142, 145, 245
BseXI GCAGC 1 cut(s) 48
BsiHKCI CYCGRG 2 cut(s) 348, 501
BsiSI CCGG 1 cut(s) 176
BslFI GGGAC 1 cut(s) 265
BsmFI GGGAC 1 cut(s) 265
BsmI GAATGC 1 cut(s) 316
BsoBI CYCGRG 2 cut(s) 348, 501
Bsp13I TCCGGA 1 cut(s) 175
Bsp1720I GCTNAGC 1 cut(s) 321
BspCNI CTCAG 1 cut(s) 313
BspEI TCCGGA 1 cut(s) 175
BspHI TCATGA 1 cut(s) 258
BspLI GGNNCC 2 cut(s) 174, 281
BspMAI CTGCAG 1 cut(s) 229
BspTI CTTAAG 1 cut(s) 427
BsrDI GCAATG 1 cut(s) 234
BsrI ACTGG 2 cut(s) 11, 439
BssECI CCNNGG 1 cut(s) 383
Bst4CI ACNGT 1 cut(s) 334
Bst6I CTCTTC 1 cut(s) 248
BstAFI CTTAAG 1 cut(s) 427
BstAPI GCANNNNNTGC 1 cut(s) 22
BstC8I GCNNGC 1 cut(s) 424
BstDEI CTNAG 1 cut(s) 321
BstF5I GGATG 2 cut(s) 345, 463
BstHHI GCGC 1 cut(s) 79
BstMWI GCNNNNNNNGC 3 cut(s) 22, 61, 245
BstSFI CTRYAG 1 cut(s) 225
BstV1I GCAGC 1 cut(s) 48
BtsCI GGATG 2 cut(s) 345, 463
BtsI GCAGTG 1 cut(s) 222
BtsIMutI CAGTG 2 cut(s) 222, 330
Cac8I GCNNGC 1 cut(s) 424
CciI TCATGA 1 cut(s) 258
CfoI GCGC 1 cut(s) 79
Cfr13I GGNCC 1 cut(s) 279
Csp6I GTAC 1 cut(s) 265
CviAII CATG 3 cut(s) 184, 259, 451
CviJI RGCY 4 cut(s) 90, 138, 203, 253
CviKI_1 RGCY 4 cut(s) 90, 138, 203, 253
CviQI GTAC 1 cut(s) 265
DdeI CTNAG 1 cut(s) 321
DriI GACNNNNNGTC 1 cut(s) 277
Eam1104I CTCTTC 1 cut(s) 248
Eam1105I GACNNNNNGTC 1 cut(s) 277
EarI CTCTTC 1 cut(s) 248
Eco47I GGWCC 1 cut(s) 279
Eco88I CYCGRG 2 cut(s) 348, 501
EcoO109I RGGNCCY 1 cut(s) 279
EcoT22I ATGCAT 1 cut(s) 496
FaeI CATG 3 cut(s) 187, 262, 454
FaiI YATR 4 cut(s) 66, 185, 260, 452
FaqI GGGAC 1 cut(s) 265
FatI CATG 3 cut(s) 183, 258, 450
Fnu4HI GCNGC 1 cut(s) 62
FokI GGATG 2 cut(s) 352, 470
Fsp4HI GCNGC 1 cut(s) 62
GlaI GCGC 1 cut(s) 78
GluI GCNGC 1 cut(s) 62
GsuI CTGGAG 1 cut(s) 456
HapII CCGG 1 cut(s) 176
HhaI GCGC 1 cut(s) 79
Hin1II CATG 3 cut(s) 187, 262, 454
Hin6I GCGC 1 cut(s) 77
HinP1I GCGC 1 cut(s) 77
HindIII AAGCTT 1 cut(s) 88
HinfI GANTC 5 cut(s) 179, 217, 272, 388, 398
HpaII CCGG 1 cut(s) 176
HphI GGTGA 1 cut(s) 22
Hpy188III TCNNGA 4 cut(s) 176, 259, 348, 371
Hpy99I CGWCG 1 cut(s) 170
HpyAV CCTTC 1 cut(s) 457
HpyCH4III ACNGT 1 cut(s) 334
HpyCH4V TGCA 5 cut(s) 64, 107, 227, 422, 494
HpyF10VI GCNNNNNNNGC 3 cut(s) 22, 61, 245
HpyF3I CTNAG 1 cut(s) 321
Hsp92II CATG 3 cut(s) 187, 262, 454
HspAI GCGC 1 cut(s) 77
Kpn2I TCCGGA 1 cut(s) 175
LmnI GCTCC 2 cut(s) 258, 319
LpnPI CCDG 5 cut(s) 29, 189, 227, 330, 420
Lsp1109I GCAGC 1 cut(s) 48
LweI GCATC 3 cut(s) 64, 330, 481
MboII GAAGA 5 cut(s) 106, 112, 235, 374, 521
MluCI AATT 2 cut(s) 287, 366
MlyI GAGTC 3 cut(s) 188, 266, 382
Mph1103I ATGCAT 1 cut(s) 496
MroI TCCGGA 1 cut(s) 175
MroXI GAANNNNTTC 1 cut(s) 366
MseI TTAA 1 cut(s) 428
MspCI CTTAAG 1 cut(s) 427
MspI CCGG 1 cut(s) 176
Mva1269I GAATGC 1 cut(s) 316
MwoI GCNNNNNNNGC 3 cut(s) 22, 61, 245
NlaIII CATG 3 cut(s) 187, 262, 454
NlaIV GGNNCC 2 cut(s) 174, 281
NmeAIII GCCGAG 1 cut(s) 105
NsiI ATGCAT 1 cut(s) 496
PagI TCATGA 1 cut(s) 258
PctI GAATGC 1 cut(s) 316
PdmI GAANNNNTTC 1 cut(s) 366
PfeI GAWTC 2 cut(s) 217, 398
PkrI GCNGC 1 cut(s) 63
PleI GAGTC 3 cut(s) 187, 266, 382
PpsI GAGTC 3 cut(s) 187, 266, 382
PpuMI RGGWCCY 1 cut(s) 279
Psp5II RGGWCCY 1 cut(s) 279
PspN4I GGNNCC 2 cut(s) 174, 281
PspPI GGNCC 1 cut(s) 279
PspPPI RGGWCCY 1 cut(s) 279
PstI CTGCAG 1 cut(s) 229
RsaI GTAC 1 cut(s) 266
RsaNI GTAC 1 cut(s) 265
SaqAI TTAA 1 cut(s) 428
SatI GCNGC 1 cut(s) 62
Sau96I GGNCC 1 cut(s) 279
SchI GAGTC 3 cut(s) 188, 266, 382
SetI ASST 7 cut(s) 92, 140, 174, 191, 195, 255, 281
SfaNI GCATC 3 cut(s) 64, 330, 481
SfcI CTRYAG 1 cut(s) 225
SinI GGWCC 1 cut(s) 279
SmlI CTYRAG 2 cut(s) 274, 427
SmoI CTYRAG 2 cut(s) 274, 427
Sse9I AATT 2 cut(s) 287, 366
TaaI ACNGT 1 cut(s) 334
TaqI TCGA 2 cut(s) 168, 195
TaqII GACCGA 1 cut(s) 397
TasI AATT 2 cut(s) 287, 366
TfiI GAWTC 2 cut(s) 217, 398
Tru1I TTAA 1 cut(s) 428
Tru9I TTAA 1 cut(s) 428
TscAI CASTG 2 cut(s) 229, 337
TseI GCWGC 1 cut(s) 61
TspDTI ATGAA 2 cut(s) 17, 113
TspRI CASTG 2 cut(s) 229, 337
Vha464I CTTAAG 1 cut(s) 427
VpaK11BI GGWCC 1 cut(s) 279
XapI RAATTY 1 cut(s) 366
XmnI GAANNNNTTC 1 cut(s) 366
Zsp2I ATGCAT 1 cut(s) 496
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.