Prupe.5G143000_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0011039
Physical Location & Seq
Forward (+)
13234244 .. 13236704
2461 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G143000.1

Sequence Viewer

Length: 522 bp
ATGAATTGGGTGAGGCAGGGAGTGTTGGTTTCTTTTGGGAGGCAGATGCATACTTATGATGGGCCAAGTGAAAGCTTGAAGACAAAGATTGCCCAGTTGGGGAAAATGAGGAAGAGAAAAAGCTCAAAGAAAGATAAACAAACAGTGTTCGTTGAGGTTCCGGAGCCTATGACCTACCTAGACACAGCCACTATGCCCCAGATTCTCACTGCTGTTGGAATAGCCCTCTTCGCCAAGCTCCTCATGATGTATGATGACTCAAGATCACAAGAATTGATTGAACGCAAAATAAAGAATGCTCCTGCTGAGCAAGGCACTGTTAGGATGCTCACTCGCGAGGAATGGGAAGAAATTCGTGAAGTGAGGCCAAGGACTCCATTTGAATCCAAGCTGGCTCGTCCAAATGCACGGATAAGAACTGGAGAACCAGTACGCATGGAGGATTTGAAGGATTGGACAATTGATGTGCTCACAGATGCATTTGCTCGGGTTGAGGAGAGTGTTAGGCACGGTTCCAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

174

Amino Acids

20.0

Weight (kDa)

9.52

Isoelectric Point (pI)

53.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011039)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G04340
fragaria_vesca FvH4_5g09330 FvH4_5g09330 FvH4_5g09330
malus_domestica MD06G1132000.v1.1 MD14G1148400.v1.1
prunus_persica Prupe.5G143000_v2.0.a1
pyrus_communis pycom06g12360 pycom14g12310
rosa_chinensis RchiOBHm_Chr7g0188821
rosa_laevigata RLG00000004656
rosa_multiflora Rmu_ssc0000053.1_g000001
rosa_roxburghii Rroxscaffold_3G00265990
rosa_rugosa Rorug06G0494100 Rorug06G0494200
rosa_samantha Rh7AG099000 Rh7BG100700 Rh7CG102200 Rh7DG100800
rosa_wichuraiana Rw7G008530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 336
AccIII TCCGGA 1 cut(s) 160
AcsI RAATTY 1 cut(s) 351
AfaI GTAC 1 cut(s) 432
AfiI CCNNNNNNNGG 1 cut(s) 99
AgsI TTSAA 4 cut(s) 79, 281, 383, 448
AluBI AGCT 4 cut(s) 75, 123, 238, 391
AluI AGCT 4 cut(s) 75, 123, 238, 391
Alw21I GWGCWC 1 cut(s) 471
Ama87I CYCGRG 1 cut(s) 486
Aor13HI TCCGGA 1 cut(s) 160
AoxI GGCC 2 cut(s) 62, 365
ApoI RAATTY 1 cut(s) 351
Asp700I GAANNNNTTC 1 cut(s) 351
AspS9I GGNCC 1 cut(s) 62
AsuHPI GGTGA 1 cut(s) 22
AvaI CYCGRG 1 cut(s) 486
BbsI GAAGAC 1 cut(s) 86
Bbv12I GWGCWC 1 cut(s) 471
BccI CCATC 1 cut(s) 53
BfaI CTAG 1 cut(s) 179
BlpI GCTNAGC 1 cut(s) 306
BmeT110I CYCGRG 1 cut(s) 486
BmgT120I GGNCC 1 cut(s) 62
BmiI GGNNCC 3 cut(s) 159, 165, 514
BmrI ACTGGG 1 cut(s) 88
BmsI GCATC 3 cut(s) 36, 315, 466
BmuI ACTGGG 1 cut(s) 88
BpiI GAAGAC 1 cut(s) 86
BpmI CTGGAG 1 cut(s) 441
Bpu1102I GCTNAGC 1 cut(s) 306
BpuEI CTTGAG 1 cut(s) 244
BsaJI CCNNGG 1 cut(s) 368
BsaWI WCCGGW 1 cut(s) 160
BsaXI ACNNNNNCTCC 4 cut(s) 12, 42, 414, 444
Bsc4I CCNNNNNNNGG 1 cut(s) 99
Bse1I ACTGG 3 cut(s) 94, 424, 428
BseAI TCCGGA 1 cut(s) 160
BseDI CCNNGG 1 cut(s) 368
BseGI GGATG 1 cut(s) 330
BseLI CCNNNNNNNGG 1 cut(s) 99
BseMII CTCAG 1 cut(s) 297
BseNI ACTGG 3 cut(s) 94, 424, 428
BseRI GAGGAG 2 cut(s) 230, 509
Bsh1236I CGCG 1 cut(s) 336
BshFI GGCC 2 cut(s) 64, 367
BsiHKAI GWGCWC 1 cut(s) 471
BsiHKCI CYCGRG 1 cut(s) 486
BsiSI CCGG 1 cut(s) 161
BslI CCNNNNNNNGG 1 cut(s) 99
BsmI GAATGC 1 cut(s) 301
BsnI GGCC 2 cut(s) 64, 367
BsoBI CYCGRG 1 cut(s) 486
Bsp1286I GDGCHC 1 cut(s) 471
Bsp13I TCCGGA 1 cut(s) 160
Bsp143I GATC 1 cut(s) 263
Bsp1720I GCTNAGC 1 cut(s) 306
Bsp68I TCGCGA 1 cut(s) 336
BspANI GGCC 2 cut(s) 64, 367
BspCNI CTCAG 1 cut(s) 298
BspEI TCCGGA 1 cut(s) 160
BspFNI CGCG 1 cut(s) 336
BspHI TCATGA 1 cut(s) 243
BspLI GGNNCC 3 cut(s) 159, 165, 514
BsrI ACTGG 3 cut(s) 94, 424, 428
BssECI CCNNGG 1 cut(s) 368
BssMI GATC 1 cut(s) 263
BssT1I CCWWGG 1 cut(s) 368
Bst4CI ACNGT 3 cut(s) 145, 319, 512
Bst6I CTCTTC 2 cut(s) 107, 233
BstC8I GCNNGC 1 cut(s) 393
BstDEI CTNAG 1 cut(s) 306
BstF5I GGATG 1 cut(s) 330
BstFNI CGCG 1 cut(s) 336
BstKTI GATC 1 cut(s) 266
BstMBI GATC 1 cut(s) 263
BstMWI GCNNNNNNNGC 1 cut(s) 230
BstUI CGCG 1 cut(s) 336
BstV2I GAAGAC 1 cut(s) 86
BsuRI GGCC 2 cut(s) 64, 367
BtsCI GGATG 1 cut(s) 330
BtsI GCAGTG 1 cut(s) 207
BtsIMutI CAGTG 3 cut(s) 150, 207, 315
BtuMI TCGCGA 1 cut(s) 336
Cac8I GCNNGC 1 cut(s) 393
CciI TCATGA 1 cut(s) 243
Cfr13I GGNCC 1 cut(s) 62
Csp6I GTAC 1 cut(s) 431
CviAII CATG 2 cut(s) 244, 436
CviQI GTAC 1 cut(s) 431
DdeI CTNAG 1 cut(s) 306
DpnI GATC 1 cut(s) 265
DpnII GATC 1 cut(s) 263
Eam1104I CTCTTC 2 cut(s) 107, 233
EarI CTCTTC 2 cut(s) 107, 233
Eco130I CCWWGG 1 cut(s) 368
Eco88I CYCGRG 1 cut(s) 486
EcoT14I CCWWGG 1 cut(s) 368
EcoT22I ATGCAT 2 cut(s) 51, 481
ErhI CCWWGG 1 cut(s) 368
FaeI CATG 2 cut(s) 247, 439
FaiI YATR 7 cut(s) 51, 57, 170, 194, 245, 252, 437
FatI CATG 2 cut(s) 243, 435
FokI GGATG 1 cut(s) 337
FspBI CTAG 1 cut(s) 179
GsuI CTGGAG 1 cut(s) 441
HaeIII GGCC 2 cut(s) 64, 367
HapII CCGG 1 cut(s) 161
Hin1II CATG 2 cut(s) 247, 439
HindIII AAGCTT 1 cut(s) 73
HinfI GANTC 4 cut(s) 202, 257, 373, 383
HpaII CCGG 1 cut(s) 161
HphI GGTGA 1 cut(s) 22
Hpy188III TCNNGA 5 cut(s) 161, 244, 261, 335, 356
HpyAV CCTTC 1 cut(s) 442
HpyCH4III ACNGT 3 cut(s) 145, 319, 512
HpyCH4V TGCA 3 cut(s) 49, 407, 479
HpyF10VI GCNNNNNNNGC 1 cut(s) 230
HpyF3I CTNAG 1 cut(s) 306
Hsp92II CATG 2 cut(s) 247, 439
Kpn2I TCCGGA 1 cut(s) 160
Kzo9I GATC 1 cut(s) 263
LmnI GCTCC 3 cut(s) 163, 243, 304
LpnPI CCDG 8 cut(s) 2, 107, 174, 212, 315, 377, 405, 441
LweI GCATC 3 cut(s) 36, 315, 466
MaeI CTAG 1 cut(s) 179
MalI GATC 1 cut(s) 265
MboI GATC 1 cut(s) 263
MboII GAAGA 4 cut(s) 91, 124, 220, 359
MfeI CAATTG 2 cut(s) 459, 517
MhlI GDGCHC 1 cut(s) 471
MluCI AATT 5 cut(s) 4, 272, 351, 459, 517
MlyI GAGTC 2 cut(s) 251, 367
MmeI TCCRAC 1 cut(s) 196
Mph1103I ATGCAT 2 cut(s) 51, 481
MroI TCCGGA 1 cut(s) 160
MroXI GAANNNNTTC 1 cut(s) 351
MslI CAYNNNNRTG 1 cut(s) 54
MspI CCGG 1 cut(s) 161
MunI CAATTG 2 cut(s) 459, 517
Mva1269I GAATGC 1 cut(s) 301
MvnI CGCG 1 cut(s) 336
MwoI GCNNNNNNNGC 1 cut(s) 230
NdeII GATC 1 cut(s) 263
NlaIII CATG 2 cut(s) 247, 439
NlaIV GGNNCC 3 cut(s) 159, 165, 514
NruI TCGCGA 1 cut(s) 336
NsiI ATGCAT 2 cut(s) 51, 481
PagI TCATGA 1 cut(s) 243
PctI GAATGC 1 cut(s) 301
PdmI GAANNNNTTC 1 cut(s) 351
PfeI GAWTC 2 cut(s) 202, 383
PleI GAGTC 2 cut(s) 251, 367
PpsI GAGTC 2 cut(s) 251, 367
PspN4I GGNNCC 3 cut(s) 159, 165, 514
PspPI GGNCC 1 cut(s) 62
RruI TCGCGA 1 cut(s) 336
RsaI GTAC 1 cut(s) 432
RsaNI GTAC 1 cut(s) 431
RseI CAYNNNNRTG 1 cut(s) 54
Sau3AI GATC 1 cut(s) 263
Sau96I GGNCC 1 cut(s) 62
SchI GAGTC 2 cut(s) 251, 367
SduI GDGCHC 1 cut(s) 471
SetI ASST 7 cut(s) 77, 125, 159, 176, 180, 240, 393
SfaNI GCATC 3 cut(s) 36, 315, 466
SmiMI CAYNNNNRTG 1 cut(s) 54
SmlI CTYRAG 1 cut(s) 259
SmoI CTYRAG 1 cut(s) 259
Sse9I AATT 5 cut(s) 4, 272, 351, 459, 517
SspMI CTAG 1 cut(s) 179
StyI CCWWGG 1 cut(s) 368
TaaI ACNGT 3 cut(s) 145, 319, 512
TasI AATT 5 cut(s) 4, 272, 351, 459, 517
TfiI GAWTC 2 cut(s) 202, 383
TscAI CASTG 3 cut(s) 150, 214, 322
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 424
TspRI CASTG 3 cut(s) 150, 214, 322
XapI RAATTY 1 cut(s) 351
XmnI GAANNNNTTC 1 cut(s) 351
XspI CTAG 1 cut(s) 179
Zsp2I ATGCAT 2 cut(s) 51, 481
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.