RchiOBHm_Chr7g0188821

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0011039
Physical Location & Seq
Forward (+)
8200808 .. 8203319
2512 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ16863

Sequence Viewer

Length: 531 bp
ATGAGAATGATGAACTGGGTGAGGCAGAGAGGGCTGGTTTCTATAGGGAGGCGATTGCATACCTATGATGGGCCAAGTGAGAGCTTGAAGATGAAGATGGCGGAGTTGGAGAAGATGAGGAAGAGCAAGAGCTTCAAGAAACGAAAGAACAGAGTGTTCGTTGAGGTTCCGGAGCCTTTGACGTACTTAGACACAGCCACCATGCCCATGTACCTCGCCGCTGCCGGAATAGCTCTCTTCGCTAAGCTCCTCATGATGTATGATGACTCAAGGTCGCAAGAATTGATTGAACGCAAGATAAGGAATGCTCCTGCTGATCAAGGCACTGTTCGGATGCTCAGTCGTGAGGAATGGGAAGAAATTCGAGCACAGAGGCCGAGGACTCCGTTTGAATCCAAGCTTGCTCGTCCAAATGCCCGTCTAAGAACTGGAGAACCAGTGCGCATGGAGGATTTGAAAGATTGGACAATTGATGTGTTCACGGATGCATTTGCTCGGGCTGAAGAAAGTGTTAGACATGGTTCCAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

176

Amino Acids

20.61

Weight (kDa)

10.03

Isoelectric Point (pI)

54.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011039)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G04340
fragaria_vesca FvH4_5g09330 FvH4_5g09330 FvH4_5g09330
malus_domestica MD06G1132000.v1.1 MD14G1148400.v1.1
prunus_persica Prupe.5G143000_v2.0.a1
pyrus_communis pycom06g12360 pycom14g12310
rosa_chinensis RchiOBHm_Chr7g0188821
rosa_laevigata RLG00000004656
rosa_multiflora Rmu_ssc0000053.1_g000001
rosa_roxburghii Rroxscaffold_3G00265990
rosa_rugosa Rorug06G0494100 Rorug06G0494200
rosa_samantha Rh7AG099000 Rh7BG100700 Rh7CG102200 Rh7DG100800
rosa_wichuraiana Rw7G008530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 443
AccIII TCCGGA 1 cut(s) 169
AciI CCGC 2 cut(s) 101, 219
AcsI RAATTY 1 cut(s) 360
AcuI CTGAAG 1 cut(s) 522
AfaI GTAC 2 cut(s) 185, 212
AfiI CCNNNNNNNGG 1 cut(s) 69
AgsI TTSAA 5 cut(s) 88, 136, 290, 392, 457
AhdI GACNNNNNGTC 1 cut(s) 271
AluBI AGCT 5 cut(s) 84, 132, 233, 247, 400
AluI AGCT 5 cut(s) 84, 132, 233, 247, 400
Alw21I GWGCWC 1 cut(s) 370
Ama87I CYCGRG 1 cut(s) 495
Aor13HI TCCGGA 1 cut(s) 169
AoxI GGCC 2 cut(s) 71, 374
ApeKI GCWGC 1 cut(s) 221
ApoI RAATTY 1 cut(s) 360
Asp700I GAANNNNTTC 1 cut(s) 360
AspLEI GCGC 1 cut(s) 444
AspS9I GGNCC 1 cut(s) 71
AsuHPI GGTGA 1 cut(s) 31
AvaI CYCGRG 1 cut(s) 495
Bbv12I GWGCWC 1 cut(s) 370
BbvI GCAGC 1 cut(s) 208
BccI CCATC 2 cut(s) 62, 91
BclI TGATCA 1 cut(s) 316
BfmI CTRYAG 1 cut(s) 42
BisI GCNGC 2 cut(s) 219, 222
BlpI GCTNAGC 1 cut(s) 243
BlsI GCNGC 2 cut(s) 220, 223
BmeRI GACNNNNNGTC 1 cut(s) 271
BmeT110I CYCGRG 1 cut(s) 495
BmgT120I GGNCC 1 cut(s) 71
BmiI GGNNCC 3 cut(s) 168, 174, 523
BmrI ACTGGG 1 cut(s) 25
BmsI GCATC 2 cut(s) 324, 475
BmuI ACTGGG 1 cut(s) 25
BpmI CTGGAG 1 cut(s) 450
Bpu1102I GCTNAGC 1 cut(s) 243
BpuEI CTTGAG 1 cut(s) 253
BsaJI CCNNGG 1 cut(s) 377
BsaWI WCCGGW 1 cut(s) 169
BsaXI ACNNNNNCTCC 2 cut(s) 423, 453
Bsc4I CCNNNNNNNGG 1 cut(s) 69
Bse1I ACTGG 3 cut(s) 20, 433, 437
BseAI TCCGGA 1 cut(s) 169
BseDI CCNNGG 1 cut(s) 377
BseGI GGATG 2 cut(s) 339, 490
BseLI CCNNNNNNNGG 1 cut(s) 69
BseMII CTCAG 1 cut(s) 352
BseNI ACTGG 3 cut(s) 20, 433, 437
BseRI GAGGAG 1 cut(s) 239
BseXI GCAGC 1 cut(s) 208
BshFI GGCC 2 cut(s) 73, 376
BsiHKAI GWGCWC 1 cut(s) 370
BsiHKCI CYCGRG 1 cut(s) 495
BsiSI CCGG 2 cut(s) 170, 225
BslI CCNNNNNNNGG 1 cut(s) 69
BsmI GAATGC 1 cut(s) 310
BsnI GGCC 2 cut(s) 73, 376
BsoBI CYCGRG 1 cut(s) 495
Bsp1286I GDGCHC 1 cut(s) 370
Bsp13I TCCGGA 1 cut(s) 169
Bsp143I GATC 1 cut(s) 316
Bsp1720I GCTNAGC 1 cut(s) 243
BspACI CCGC 2 cut(s) 101, 219
BspANI GGCC 2 cut(s) 73, 376
BspCNI CTCAG 1 cut(s) 351
BspEI TCCGGA 1 cut(s) 169
BspHI TCATGA 1 cut(s) 252
BspLI GGNNCC 3 cut(s) 168, 174, 523
BspQI GCTCTTC 1 cut(s) 116
BsrI ACTGG 3 cut(s) 20, 433, 437
BssECI CCNNGG 1 cut(s) 377
BssMI GATC 1 cut(s) 316
Bst4CI ACNGT 1 cut(s) 328
Bst6I CTCTTC 2 cut(s) 116, 242
BstC8I GCNNGC 1 cut(s) 402
BstDEI CTNAG 4 cut(s) 187, 243, 338, 422
BstF5I GGATG 2 cut(s) 339, 490
BstHHI GCGC 1 cut(s) 444
BstKTI GATC 1 cut(s) 319
BstMBI GATC 1 cut(s) 316
BstMWI GCNNNNNNNGC 3 cut(s) 31, 230, 239
BstSFI CTRYAG 1 cut(s) 42
BstV1I GCAGC 1 cut(s) 208
BsuRI GGCC 2 cut(s) 73, 376
BtsCI GGATG 2 cut(s) 339, 490
BtsIMutI CAGTG 2 cut(s) 324, 444
Cac8I GCNNGC 1 cut(s) 402
CciI TCATGA 1 cut(s) 252
CfoI GCGC 1 cut(s) 444
Cfr13I GGNCC 1 cut(s) 71
Csp6I GTAC 2 cut(s) 184, 211
CviAII CATG 5 cut(s) 202, 208, 253, 445, 518
CviQI GTAC 2 cut(s) 184, 211
DdeI CTNAG 4 cut(s) 187, 243, 338, 422
DpnI GATC 1 cut(s) 318
DpnII GATC 1 cut(s) 316
DriI GACNNNNNGTC 1 cut(s) 271
Eam1104I CTCTTC 2 cut(s) 116, 242
Eam1105I GACNNNNNGTC 1 cut(s) 271
EarI CTCTTC 2 cut(s) 116, 242
EciI GGCGGA 1 cut(s) 116
Eco57I CTGAAG 1 cut(s) 522
Eco88I CYCGRG 1 cut(s) 495
EcoT22I ATGCAT 1 cut(s) 490
FaeI CATG 5 cut(s) 205, 211, 256, 448, 521
FaiI YATR 9 cut(s) 44, 60, 66, 203, 209, 254, 261, 446, 519
FatI CATG 5 cut(s) 201, 207, 252, 444, 517
FbaI TGATCA 1 cut(s) 316
Fnu4HI GCNGC 2 cut(s) 219, 222
FokI GGATG 2 cut(s) 346, 497
Fsp4HI GCNGC 2 cut(s) 219, 222
FspAI RTGCGCAY 1 cut(s) 443
FspI TGCGCA 1 cut(s) 443
GlaI GCGC 1 cut(s) 443
GluI GCNGC 2 cut(s) 219, 222
GsuI CTGGAG 1 cut(s) 450
HaeIII GGCC 2 cut(s) 73, 376
HapII CCGG 2 cut(s) 170, 225
HhaI GCGC 1 cut(s) 444
Hin1II CATG 5 cut(s) 205, 211, 256, 448, 521
Hin6I GCGC 1 cut(s) 442
HinP1I GCGC 1 cut(s) 442
HindIII AAGCTT 1 cut(s) 398
HinfI GANTC 3 cut(s) 266, 382, 392
HpaII CCGG 2 cut(s) 170, 225
HphI GGTGA 1 cut(s) 31
Hpy166II GTNNAC 1 cut(s) 480
Hpy188I TCNGA 1 cut(s) 333
Hpy188III TCNNGA 4 cut(s) 136, 170, 253, 344
Hpy8I GTNNAC 1 cut(s) 480
HpyCH4III ACNGT 1 cut(s) 328
HpyCH4IV ACGT 1 cut(s) 182
HpyCH4V TGCA 2 cut(s) 58, 488
HpyF10VI GCNNNNNNNGC 3 cut(s) 31, 230, 239
HpyF3I CTNAG 4 cut(s) 187, 243, 338, 422
HpySE526I ACGT 1 cut(s) 182
Hsp92II CATG 5 cut(s) 205, 211, 256, 448, 521
HspAI GCGC 1 cut(s) 442
Kpn2I TCCGGA 1 cut(s) 169
Ksp22I TGATCA 1 cut(s) 316
Kzo9I GATC 1 cut(s) 316
LguI GCTCTTC 1 cut(s) 116
LmnI GCTCC 3 cut(s) 172, 252, 313
LpnPI CCDG 6 cut(s) 20, 183, 238, 324, 414, 450
Lsp1109I GCAGC 1 cut(s) 208
LweI GCATC 2 cut(s) 324, 475
MaeII ACGT 1 cut(s) 182
MalI GATC 1 cut(s) 318
MboI GATC 1 cut(s) 316
MboII GAAGA 7 cut(s) 100, 106, 124, 133, 229, 368, 515
MfeI CAATTG 1 cut(s) 468
MhlI GDGCHC 1 cut(s) 370
MluCI AATT 3 cut(s) 281, 360, 468
MlyI GAGTC 2 cut(s) 260, 376
MmeI TCCRAC 1 cut(s) 87
Mph1103I ATGCAT 1 cut(s) 490
MroI TCCGGA 1 cut(s) 169
MroXI GAANNNNTTC 1 cut(s) 360
MslI CAYNNNNRTG 2 cut(s) 63, 206
MspA1I CMGCKG 1 cut(s) 221
MspI CCGG 2 cut(s) 170, 225
MunI CAATTG 1 cut(s) 468
Mva1269I GAATGC 1 cut(s) 310
MwoI GCNNNNNNNGC 3 cut(s) 31, 230, 239
NdeII GATC 1 cut(s) 316
NlaIII CATG 5 cut(s) 205, 211, 256, 448, 521
NlaIV GGNNCC 3 cut(s) 168, 174, 523
NmeAIII GCCGAG 1 cut(s) 402
NsbI TGCGCA 1 cut(s) 443
NsiI ATGCAT 1 cut(s) 490
PagI TCATGA 1 cut(s) 252
PciSI GCTCTTC 1 cut(s) 116
PctI GAATGC 1 cut(s) 310
PdmI GAANNNNTTC 1 cut(s) 360
PfeI GAWTC 1 cut(s) 392
PkrI GCNGC 2 cut(s) 220, 223
PleI GAGTC 2 cut(s) 260, 376
PpsI GAGTC 2 cut(s) 260, 376
PspN4I GGNNCC 3 cut(s) 168, 174, 523
PspPI GGNCC 1 cut(s) 71
RsaI GTAC 2 cut(s) 185, 212
RsaNI GTAC 2 cut(s) 184, 211
RseI CAYNNNNRTG 2 cut(s) 63, 206
SapI GCTCTTC 1 cut(s) 116
SatI GCNGC 2 cut(s) 219, 222
Sau3AI GATC 1 cut(s) 316
Sau96I GGNCC 1 cut(s) 71
SchI GAGTC 2 cut(s) 260, 376
SduI GDGCHC 1 cut(s) 370
SfaNI GCATC 2 cut(s) 324, 475
SfcI CTRYAG 1 cut(s) 42
SmiMI CAYNNNNRTG 2 cut(s) 63, 206
SmlI CTYRAG 1 cut(s) 268
SmoI CTYRAG 1 cut(s) 268
Sse9I AATT 3 cut(s) 281, 360, 468
SsiI CCGC 2 cut(s) 101, 219
TaaI ACNGT 1 cut(s) 328
TaiI ACGT 1 cut(s) 185
TaqI TCGA 1 cut(s) 364
TasI AATT 3 cut(s) 281, 360, 468
TauI GCSGC 1 cut(s) 221
TfiI GAWTC 1 cut(s) 392
TscAI CASTG 2 cut(s) 331, 444
TseI GCWGC 1 cut(s) 221
TspDTI ATGAA 2 cut(s) 26, 107
TspGWI ACGGA 2 cut(s) 375, 497
TspRI CASTG 2 cut(s) 331, 444
XapI RAATTY 1 cut(s) 360
XmnI GAANNNNTTC 1 cut(s) 360
Zsp2I ATGCAT 1 cut(s) 490
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.