Rh7BG100700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0011039
Physical Location & Seq
Forward (+)
7459398 .. 7461584
2187 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG100700.1

Sequence Viewer

Length: 522 bp
ATGAACTGGGTGAGGCAGAGAGGGCTGGTTTCTTTAGGGAGGCGATTGCATACCTATGATGGGCCAAGTGAGAGCTTGAAGATGAAGATGGCGGAGTTGGAGAAGATGAGGAAGAGCAAGAGCTTCAAGAAACGAAAGAACAGAGTGTTCGTTGAGGTTCCGGAGCCTTTGACCTACTTAGACACAGCCACCATGCCCATGTATCTCGCCGCTGCCGGAATAGCTCTCTTCGCTAAGCTCCTCATGATGTATGATGACTCAAGGTCGCAAGAATTGATTGAACGCAAGATAAGGAATGCTCCTGCTGATCAAGGCACTGTTCGGATGCTCAGTCGTGAGGAATGGGAAGAAATTCGAGCACAGAGGCCGAGGACTCCGTTTGAATCCAAGCTTGCTCGTCCAAATGCCCGTCTAAGAACTGGAGAACCAGTGCGCATGGAGGATTTGAAAGATTGGACAATTGATGTGTTCACGGATGCATTTGCTCGGGCTGAAGAAAGTGTTAGACATGGTTCCAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

173

Amino Acids

20.19

Weight (kDa)

9.93

Isoelectric Point (pI)

56.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011039)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G04340
fragaria_vesca FvH4_5g09330 FvH4_5g09330 FvH4_5g09330
malus_domestica MD06G1132000.v1.1 MD14G1148400.v1.1
prunus_persica Prupe.5G143000_v2.0.a1
pyrus_communis pycom06g12360 pycom14g12310
rosa_chinensis RchiOBHm_Chr7g0188821
rosa_laevigata RLG00000004656
rosa_multiflora Rmu_ssc0000053.1_g000001
rosa_roxburghii Rroxscaffold_3G00265990
rosa_rugosa Rorug06G0494100 Rorug06G0494200
rosa_samantha Rh7AG099000 Rh7BG100700 Rh7CG102200 Rh7DG100800
rosa_wichuraiana Rw7G008530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 434
AccIII TCCGGA 1 cut(s) 160
AciI CCGC 2 cut(s) 92, 210
AcsI RAATTY 1 cut(s) 351
AcuI CTGAAG 1 cut(s) 513
AfiI CCNNNNNNNGG 1 cut(s) 60
AgsI TTSAA 5 cut(s) 79, 127, 281, 383, 448
AhdI GACNNNNNGTC 1 cut(s) 262
AluBI AGCT 5 cut(s) 75, 123, 224, 238, 391
AluI AGCT 5 cut(s) 75, 123, 224, 238, 391
Alw21I GWGCWC 1 cut(s) 361
Ama87I CYCGRG 1 cut(s) 486
Aor13HI TCCGGA 1 cut(s) 160
AoxI GGCC 2 cut(s) 62, 365
ApeKI GCWGC 1 cut(s) 212
ApoI RAATTY 1 cut(s) 351
Asp700I GAANNNNTTC 1 cut(s) 351
AspLEI GCGC 1 cut(s) 435
AspS9I GGNCC 1 cut(s) 62
AsuHPI GGTGA 1 cut(s) 22
AvaI CYCGRG 1 cut(s) 486
Bbv12I GWGCWC 1 cut(s) 361
BbvI GCAGC 1 cut(s) 199
BccI CCATC 2 cut(s) 53, 82
BclI TGATCA 1 cut(s) 307
BisI GCNGC 2 cut(s) 210, 213
BlpI GCTNAGC 1 cut(s) 234
BlsI GCNGC 2 cut(s) 211, 214
BmeRI GACNNNNNGTC 1 cut(s) 262
BmeT110I CYCGRG 1 cut(s) 486
BmgT120I GGNCC 1 cut(s) 62
BmiI GGNNCC 3 cut(s) 159, 165, 514
BmrI ACTGGG 1 cut(s) 16
BmsI GCATC 2 cut(s) 315, 466
BmuI ACTGGG 1 cut(s) 16
BpmI CTGGAG 1 cut(s) 441
Bpu1102I GCTNAGC 1 cut(s) 234
BpuEI CTTGAG 1 cut(s) 244
BsaJI CCNNGG 1 cut(s) 368
BsaWI WCCGGW 1 cut(s) 160
BsaXI ACNNNNNCTCC 2 cut(s) 414, 444
Bsc4I CCNNNNNNNGG 1 cut(s) 60
Bse1I ACTGG 3 cut(s) 11, 424, 428
BseAI TCCGGA 1 cut(s) 160
BseDI CCNNGG 1 cut(s) 368
BseGI GGATG 2 cut(s) 330, 481
BseLI CCNNNNNNNGG 1 cut(s) 60
BseMII CTCAG 1 cut(s) 343
BseNI ACTGG 3 cut(s) 11, 424, 428
BseRI GAGGAG 1 cut(s) 230
BseXI GCAGC 1 cut(s) 199
BshFI GGCC 2 cut(s) 64, 367
BsiHKAI GWGCWC 1 cut(s) 361
BsiHKCI CYCGRG 1 cut(s) 486
BsiSI CCGG 2 cut(s) 161, 216
BslI CCNNNNNNNGG 1 cut(s) 60
BsmI GAATGC 1 cut(s) 301
BsnI GGCC 2 cut(s) 64, 367
BsoBI CYCGRG 1 cut(s) 486
Bsp1286I GDGCHC 1 cut(s) 361
Bsp13I TCCGGA 1 cut(s) 160
Bsp143I GATC 1 cut(s) 307
Bsp1720I GCTNAGC 1 cut(s) 234
BspACI CCGC 2 cut(s) 92, 210
BspANI GGCC 2 cut(s) 64, 367
BspCNI CTCAG 1 cut(s) 342
BspEI TCCGGA 1 cut(s) 160
BspHI TCATGA 1 cut(s) 243
BspLI GGNNCC 3 cut(s) 159, 165, 514
BspQI GCTCTTC 1 cut(s) 107
BsrI ACTGG 3 cut(s) 11, 424, 428
BssECI CCNNGG 1 cut(s) 368
BssMI GATC 1 cut(s) 307
Bst4CI ACNGT 1 cut(s) 319
Bst6I CTCTTC 2 cut(s) 107, 233
BstC8I GCNNGC 1 cut(s) 393
BstDEI CTNAG 4 cut(s) 178, 234, 329, 413
BstF5I GGATG 2 cut(s) 330, 481
BstHHI GCGC 1 cut(s) 435
BstKTI GATC 1 cut(s) 310
BstMBI GATC 1 cut(s) 307
BstMWI GCNNNNNNNGC 3 cut(s) 22, 221, 230
BstV1I GCAGC 1 cut(s) 199
BsuRI GGCC 2 cut(s) 64, 367
BtsCI GGATG 2 cut(s) 330, 481
BtsIMutI CAGTG 2 cut(s) 315, 435
Cac8I GCNNGC 1 cut(s) 393
CciI TCATGA 1 cut(s) 243
CfoI GCGC 1 cut(s) 435
Cfr13I GGNCC 1 cut(s) 62
CviAII CATG 5 cut(s) 193, 199, 244, 436, 509
DdeI CTNAG 4 cut(s) 178, 234, 329, 413
DpnI GATC 1 cut(s) 309
DpnII GATC 1 cut(s) 307
DriI GACNNNNNGTC 1 cut(s) 262
Eam1104I CTCTTC 2 cut(s) 107, 233
Eam1105I GACNNNNNGTC 1 cut(s) 262
EarI CTCTTC 2 cut(s) 107, 233
EciI GGCGGA 1 cut(s) 107
Eco57I CTGAAG 1 cut(s) 513
Eco88I CYCGRG 1 cut(s) 486
EcoT22I ATGCAT 1 cut(s) 481
FaeI CATG 5 cut(s) 196, 202, 247, 439, 512
FaiI YATR 8 cut(s) 51, 57, 194, 200, 245, 252, 437, 510
FatI CATG 5 cut(s) 192, 198, 243, 435, 508
FbaI TGATCA 1 cut(s) 307
Fnu4HI GCNGC 2 cut(s) 210, 213
FokI GGATG 2 cut(s) 337, 488
Fsp4HI GCNGC 2 cut(s) 210, 213
FspAI RTGCGCAY 1 cut(s) 434
FspI TGCGCA 1 cut(s) 434
GlaI GCGC 1 cut(s) 434
GluI GCNGC 2 cut(s) 210, 213
GsuI CTGGAG 1 cut(s) 441
HaeIII GGCC 2 cut(s) 64, 367
HapII CCGG 2 cut(s) 161, 216
HhaI GCGC 1 cut(s) 435
Hin1II CATG 5 cut(s) 196, 202, 247, 439, 512
Hin6I GCGC 1 cut(s) 433
HinP1I GCGC 1 cut(s) 433
HindIII AAGCTT 1 cut(s) 389
HinfI GANTC 3 cut(s) 257, 373, 383
HpaII CCGG 2 cut(s) 161, 216
HphI GGTGA 1 cut(s) 22
Hpy166II GTNNAC 1 cut(s) 471
Hpy188I TCNGA 1 cut(s) 324
Hpy188III TCNNGA 4 cut(s) 127, 161, 244, 335
Hpy8I GTNNAC 1 cut(s) 471
HpyCH4III ACNGT 1 cut(s) 319
HpyCH4V TGCA 2 cut(s) 49, 479
HpyF10VI GCNNNNNNNGC 3 cut(s) 22, 221, 230
HpyF3I CTNAG 4 cut(s) 178, 234, 329, 413
Hsp92II CATG 5 cut(s) 196, 202, 247, 439, 512
HspAI GCGC 1 cut(s) 433
Kpn2I TCCGGA 1 cut(s) 160
Ksp22I TGATCA 1 cut(s) 307
Kzo9I GATC 1 cut(s) 307
LguI GCTCTTC 1 cut(s) 107
LmnI GCTCC 3 cut(s) 163, 243, 304
LpnPI CCDG 6 cut(s) 11, 174, 229, 315, 405, 441
Lsp1109I GCAGC 1 cut(s) 199
LweI GCATC 2 cut(s) 315, 466
MalI GATC 1 cut(s) 309
MboI GATC 1 cut(s) 307
MboII GAAGA 7 cut(s) 91, 97, 115, 124, 220, 359, 506
MfeI CAATTG 1 cut(s) 459
MhlI GDGCHC 1 cut(s) 361
MluCI AATT 3 cut(s) 272, 351, 459
MlyI GAGTC 2 cut(s) 251, 367
MmeI TCCRAC 1 cut(s) 78
Mph1103I ATGCAT 1 cut(s) 481
MroI TCCGGA 1 cut(s) 160
MroXI GAANNNNTTC 1 cut(s) 351
MslI CAYNNNNRTG 2 cut(s) 54, 197
MspA1I CMGCKG 1 cut(s) 212
MspI CCGG 2 cut(s) 161, 216
MunI CAATTG 1 cut(s) 459
Mva1269I GAATGC 1 cut(s) 301
MwoI GCNNNNNNNGC 3 cut(s) 22, 221, 230
NdeII GATC 1 cut(s) 307
NlaIII CATG 5 cut(s) 196, 202, 247, 439, 512
NlaIV GGNNCC 3 cut(s) 159, 165, 514
NmeAIII GCCGAG 1 cut(s) 393
NsbI TGCGCA 1 cut(s) 434
NsiI ATGCAT 1 cut(s) 481
PagI TCATGA 1 cut(s) 243
PciSI GCTCTTC 1 cut(s) 107
PctI GAATGC 1 cut(s) 301
PdmI GAANNNNTTC 1 cut(s) 351
PfeI GAWTC 1 cut(s) 383
PkrI GCNGC 2 cut(s) 211, 214
PleI GAGTC 2 cut(s) 251, 367
PpsI GAGTC 2 cut(s) 251, 367
PspN4I GGNNCC 3 cut(s) 159, 165, 514
PspPI GGNCC 1 cut(s) 62
RseI CAYNNNNRTG 2 cut(s) 54, 197
SapI GCTCTTC 1 cut(s) 107
SatI GCNGC 2 cut(s) 210, 213
Sau3AI GATC 1 cut(s) 307
Sau96I GGNCC 1 cut(s) 62
SchI GAGTC 2 cut(s) 251, 367
SduI GDGCHC 1 cut(s) 361
SetI ASST 9 cut(s) 56, 77, 125, 159, 176, 226, 240, 266, 393
SfaNI GCATC 2 cut(s) 315, 466
SmiMI CAYNNNNRTG 2 cut(s) 54, 197
SmlI CTYRAG 1 cut(s) 259
SmoI CTYRAG 1 cut(s) 259
Sse9I AATT 3 cut(s) 272, 351, 459
SsiI CCGC 2 cut(s) 92, 210
TaaI ACNGT 1 cut(s) 319
TaqI TCGA 1 cut(s) 355
TasI AATT 3 cut(s) 272, 351, 459
TauI GCSGC 1 cut(s) 212
TfiI GAWTC 1 cut(s) 383
TscAI CASTG 2 cut(s) 322, 435
TseI GCWGC 1 cut(s) 212
TspDTI ATGAA 2 cut(s) 17, 98
TspGWI ACGGA 2 cut(s) 366, 488
TspRI CASTG 2 cut(s) 322, 435
XapI RAATTY 1 cut(s) 351
XmnI GAANNNNTTC 1 cut(s) 351
Zsp2I ATGCAT 1 cut(s) 481
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.