Rmu_ssc0000053.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000053.1
OG0011039
Physical Location & Seq
Forward (+)
1 .. 2427
2427 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000053.1_g000001.1.cds

Sequence Viewer

Length: 435 bp
atggcggagttggagaagatgaggaagagcaagagcttcaagaaacgaaagaacagagtgttcgttgaggttccggagcctttgacgtacttagacacagccaccatgcccatgtacctcgccgctgccggaatagctctcttcgctaagctcctcatgatgtatgatgactcaaggtcgcaagaattgattgaacgcaagataaggaatgctcctgctgatcaaggcactgttcggatgctcagtcgtgaggaatgggaagaaattcgagcacagaggccgaggactccgtttgaatccaagcttgctcgtccaaatgcccgtctaagaactggagaaccagtgcgcatggaggatttgaaagattggacaattgatgtgttcacggatgcatttgctcgggctgaagaaagtgttagacatggttccaagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

144

Amino Acids

16.79

Weight (kDa)

9.59

Isoelectric Point (pI)

53.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011039)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G04340
fragaria_vesca FvH4_5g09330 FvH4_5g09330 FvH4_5g09330
malus_domestica MD06G1132000.v1.1 MD14G1148400.v1.1
prunus_persica Prupe.5G143000_v2.0.a1
pyrus_communis pycom06g12360 pycom14g12310
rosa_chinensis RchiOBHm_Chr7g0188821
rosa_laevigata RLG00000004656
rosa_multiflora Rmu_ssc0000053.1_g000001
rosa_roxburghii Rroxscaffold_3G00265990
rosa_rugosa Rorug06G0494100 Rorug06G0494200
rosa_samantha Rh7AG099000 Rh7BG100700 Rh7CG102200 Rh7DG100800
rosa_wichuraiana Rw7G008530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 347
AccIII TCCGGA 1 cut(s) 73
AciI CCGC 2 cut(s) 5, 123
AcsI RAATTY 1 cut(s) 264
AcuI CTGAAG 1 cut(s) 426
AfaI GTAC 2 cut(s) 89, 116
AgsI TTSAA 4 cut(s) 40, 194, 296, 361
AhdI GACNNNNNGTC 1 cut(s) 175
AluBI AGCT 4 cut(s) 36, 137, 151, 304
AluI AGCT 4 cut(s) 36, 137, 151, 304
Alw21I GWGCWC 1 cut(s) 274
Ama87I CYCGRG 1 cut(s) 399
Aor13HI TCCGGA 1 cut(s) 73
AoxI GGCC 1 cut(s) 278
ApeKI GCWGC 1 cut(s) 125
ApoI RAATTY 1 cut(s) 264
Asp700I GAANNNNTTC 1 cut(s) 264
AspLEI GCGC 1 cut(s) 348
AvaI CYCGRG 1 cut(s) 399
Bbv12I GWGCWC 1 cut(s) 274
BbvI GCAGC 1 cut(s) 112
BclI TGATCA 1 cut(s) 220
BisI GCNGC 2 cut(s) 123, 126
BlpI GCTNAGC 1 cut(s) 147
BlsI GCNGC 2 cut(s) 124, 127
BmeRI GACNNNNNGTC 1 cut(s) 175
BmeT110I CYCGRG 1 cut(s) 399
BmiI GGNNCC 3 cut(s) 72, 78, 427
BmsI GCATC 2 cut(s) 228, 379
BpmI CTGGAG 1 cut(s) 354
Bpu1102I GCTNAGC 1 cut(s) 147
BpuEI CTTGAG 1 cut(s) 157
BsaJI CCNNGG 1 cut(s) 281
BsaWI WCCGGW 1 cut(s) 73
BsaXI ACNNNNNCTCC 2 cut(s) 327, 357
Bse1I ACTGG 2 cut(s) 337, 341
BseAI TCCGGA 1 cut(s) 73
BseDI CCNNGG 1 cut(s) 281
BseGI GGATG 2 cut(s) 243, 394
BseMII CTCAG 1 cut(s) 256
BseNI ACTGG 2 cut(s) 337, 341
BseRI GAGGAG 1 cut(s) 143
BseXI GCAGC 1 cut(s) 112
BshFI GGCC 1 cut(s) 280
BsiHKAI GWGCWC 1 cut(s) 274
BsiHKCI CYCGRG 1 cut(s) 399
BsiSI CCGG 2 cut(s) 74, 129
BsmI GAATGC 1 cut(s) 214
BsnI GGCC 1 cut(s) 280
BsoBI CYCGRG 1 cut(s) 399
Bsp1286I GDGCHC 1 cut(s) 274
Bsp13I TCCGGA 1 cut(s) 73
Bsp143I GATC 1 cut(s) 220
Bsp1720I GCTNAGC 1 cut(s) 147
BspACI CCGC 2 cut(s) 5, 123
BspANI GGCC 1 cut(s) 280
BspCNI CTCAG 1 cut(s) 255
BspEI TCCGGA 1 cut(s) 73
BspHI TCATGA 1 cut(s) 156
BspLI GGNNCC 3 cut(s) 72, 78, 427
BspQI GCTCTTC 1 cut(s) 20
BsrI ACTGG 2 cut(s) 337, 341
BssECI CCNNGG 1 cut(s) 281
BssMI GATC 1 cut(s) 220
Bst4CI ACNGT 1 cut(s) 232
Bst6I CTCTTC 2 cut(s) 20, 146
BstC8I GCNNGC 1 cut(s) 306
BstDEI CTNAG 4 cut(s) 91, 147, 242, 326
BstF5I GGATG 2 cut(s) 243, 394
BstHHI GCGC 1 cut(s) 348
BstKTI GATC 1 cut(s) 223
BstMBI GATC 1 cut(s) 220
BstMWI GCNNNNNNNGC 2 cut(s) 134, 143
BstV1I GCAGC 1 cut(s) 112
BsuRI GGCC 1 cut(s) 280
BtsCI GGATG 2 cut(s) 243, 394
BtsIMutI CAGTG 2 cut(s) 228, 348
Cac8I GCNNGC 1 cut(s) 306
CciI TCATGA 1 cut(s) 156
CfoI GCGC 1 cut(s) 348
Csp6I GTAC 2 cut(s) 88, 115
CviAII CATG 5 cut(s) 106, 112, 157, 349, 422
CviJI RGCY 8 cut(s) 36, 79, 101, 137, 151, 280, 304, 404
CviKI_1 RGCY 8 cut(s) 36, 79, 101, 137, 151, 280, 304, 404
CviQI GTAC 2 cut(s) 88, 115
DdeI CTNAG 4 cut(s) 91, 147, 242, 326
DpnI GATC 1 cut(s) 222
DpnII GATC 1 cut(s) 220
DriI GACNNNNNGTC 1 cut(s) 175
Eam1104I CTCTTC 2 cut(s) 20, 146
Eam1105I GACNNNNNGTC 1 cut(s) 175
EarI CTCTTC 2 cut(s) 20, 146
EciI GGCGGA 1 cut(s) 20
Eco57I CTGAAG 1 cut(s) 426
Eco88I CYCGRG 1 cut(s) 399
EcoT22I ATGCAT 1 cut(s) 394
FaeI CATG 5 cut(s) 109, 115, 160, 352, 425
FaiI YATR 6 cut(s) 107, 113, 158, 165, 350, 423
FatI CATG 5 cut(s) 105, 111, 156, 348, 421
FbaI TGATCA 1 cut(s) 220
Fnu4HI GCNGC 2 cut(s) 123, 126
FokI GGATG 2 cut(s) 250, 401
Fsp4HI GCNGC 2 cut(s) 123, 126
FspAI RTGCGCAY 1 cut(s) 347
FspI TGCGCA 1 cut(s) 347
GlaI GCGC 1 cut(s) 347
GluI GCNGC 2 cut(s) 123, 126
GsuI CTGGAG 1 cut(s) 354
HaeIII GGCC 1 cut(s) 280
HapII CCGG 2 cut(s) 74, 129
HhaI GCGC 1 cut(s) 348
Hin1II CATG 5 cut(s) 109, 115, 160, 352, 425
Hin6I GCGC 1 cut(s) 346
HinP1I GCGC 1 cut(s) 346
HindIII AAGCTT 1 cut(s) 302
HinfI GANTC 3 cut(s) 170, 286, 296
HpaII CCGG 2 cut(s) 74, 129
Hpy166II GTNNAC 1 cut(s) 384
Hpy188I TCNGA 1 cut(s) 237
Hpy188III TCNNGA 4 cut(s) 40, 74, 157, 248
Hpy8I GTNNAC 1 cut(s) 384
HpyCH4III ACNGT 1 cut(s) 232
HpyCH4IV ACGT 1 cut(s) 86
HpyCH4V TGCA 1 cut(s) 392
HpyF10VI GCNNNNNNNGC 2 cut(s) 134, 143
HpyF3I CTNAG 4 cut(s) 91, 147, 242, 326
HpySE526I ACGT 1 cut(s) 86
Hsp92II CATG 5 cut(s) 109, 115, 160, 352, 425
HspAI GCGC 1 cut(s) 346
Kpn2I TCCGGA 1 cut(s) 73
Ksp22I TGATCA 1 cut(s) 220
Kzo9I GATC 1 cut(s) 220
LguI GCTCTTC 1 cut(s) 20
LmnI GCTCC 3 cut(s) 76, 156, 217
LpnPI CCDG 5 cut(s) 87, 142, 228, 318, 354
Lsp1109I GCAGC 1 cut(s) 112
LweI GCATC 2 cut(s) 228, 379
MaeII ACGT 1 cut(s) 86
MalI GATC 1 cut(s) 222
MboI GATC 1 cut(s) 220
MboII GAAGA 5 cut(s) 28, 37, 133, 272, 419
MfeI CAATTG 1 cut(s) 372
MhlI GDGCHC 1 cut(s) 274
MluCI AATT 3 cut(s) 185, 264, 372
MlyI GAGTC 2 cut(s) 164, 280
MnlI CCTC 8 cut(s) 15, 61, 128, 164, 244, 270, 276, 346
Mph1103I ATGCAT 1 cut(s) 394
MroI TCCGGA 1 cut(s) 73
MroXI GAANNNNTTC 1 cut(s) 264
MslI CAYNNNNRTG 1 cut(s) 110
MspA1I CMGCKG 1 cut(s) 125
MspI CCGG 2 cut(s) 74, 129
MunI CAATTG 1 cut(s) 372
Mva1269I GAATGC 1 cut(s) 214
MwoI GCNNNNNNNGC 2 cut(s) 134, 143
NdeII GATC 1 cut(s) 220
NlaIII CATG 5 cut(s) 109, 115, 160, 352, 425
NlaIV GGNNCC 3 cut(s) 72, 78, 427
NmeAIII GCCGAG 1 cut(s) 306
NsbI TGCGCA 1 cut(s) 347
NsiI ATGCAT 1 cut(s) 394
PagI TCATGA 1 cut(s) 156
PciSI GCTCTTC 1 cut(s) 20
PctI GAATGC 1 cut(s) 214
PdmI GAANNNNTTC 1 cut(s) 264
PfeI GAWTC 1 cut(s) 296
PkrI GCNGC 2 cut(s) 124, 127
PleI GAGTC 2 cut(s) 164, 280
PpsI GAGTC 2 cut(s) 164, 280
PspN4I GGNNCC 3 cut(s) 72, 78, 427
RsaI GTAC 2 cut(s) 89, 116
RsaNI GTAC 2 cut(s) 88, 115
RseI CAYNNNNRTG 1 cut(s) 110
SapI GCTCTTC 1 cut(s) 20
SatI GCNGC 2 cut(s) 123, 126
Sau3AI GATC 1 cut(s) 220
SchI GAGTC 2 cut(s) 164, 280
SduI GDGCHC 1 cut(s) 274
SetI ASST 8 cut(s) 38, 72, 89, 120, 139, 153, 179, 306
SfaNI GCATC 2 cut(s) 228, 379
SmiMI CAYNNNNRTG 1 cut(s) 110
SmlI CTYRAG 1 cut(s) 172
SmoI CTYRAG 1 cut(s) 172
Sse9I AATT 3 cut(s) 185, 264, 372
SsiI CCGC 2 cut(s) 5, 123
TaaI ACNGT 1 cut(s) 232
TaiI ACGT 1 cut(s) 89
TaqI TCGA 1 cut(s) 268
TasI AATT 3 cut(s) 185, 264, 372
TauI GCSGC 1 cut(s) 125
TfiI GAWTC 1 cut(s) 296
TscAI CASTG 2 cut(s) 235, 348
TseI GCWGC 1 cut(s) 125
TspGWI ACGGA 2 cut(s) 279, 401
TspRI CASTG 2 cut(s) 235, 348
XapI RAATTY 1 cut(s) 264
XmnI GAANNNNTTC 1 cut(s) 264
Zsp2I ATGCAT 1 cut(s) 394
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.