Rh7AG099000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0011039
Physical Location & Seq
Forward (+)
7531839 .. 7533975
2137 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG099000.1

Sequence Viewer

Length: 525 bp
ATGATGAACTGGGTGAGGCAGAGAGGGCTGGTTTCTGTAGGGAGGCGATTGCATACCTATGATGGGCCAAGTGAGAGCTTGAAGATGAAGATGGCGGAGTTGGAGAAGATGAGGAAGAGCAAGAGCTTCAAGAAACGAAAGAACAGAGTGTTCGTTGAGGTTCCGGAGCCTTTGACGTACTTAGACACAGCCACCATGCCCATGTACCTCGCCGCTGCCGGAATAGCTCTCTTCGCTAAGCTCCTCATGATGTATGATGACTCAAGGTCGCAAGAATTGATTGAACGCAAGATAAGGAATGCTCCTGCTGATCAAGGCACTGTTCGGATGCTCAGTCGTGAGGAATGGGAAGAAATTCGAGCACAGAGGCCGAGGACTCCGTTTGAATCCAAGCTTGCTCGTCCAAATGCCCGTCTAAGAACTGGAGAACCAGTGCGCATGGAGGATTTGAAAGATTGGACAATTGATGTGTTCACGGATGCATTTGCTCGGGCTGAAGAAAGTGTTAGACATGGTTCCAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

174

Amino Acids

20.31

Weight (kDa)

9.93

Isoelectric Point (pI)

55.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011039)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G04340
fragaria_vesca FvH4_5g09330 FvH4_5g09330 FvH4_5g09330
malus_domestica MD06G1132000.v1.1 MD14G1148400.v1.1
prunus_persica Prupe.5G143000_v2.0.a1
pyrus_communis pycom06g12360 pycom14g12310
rosa_chinensis RchiOBHm_Chr7g0188821
rosa_laevigata RLG00000004656
rosa_multiflora Rmu_ssc0000053.1_g000001
rosa_roxburghii Rroxscaffold_3G00265990
rosa_rugosa Rorug06G0494100 Rorug06G0494200
rosa_samantha Rh7AG099000 Rh7BG100700 Rh7CG102200 Rh7DG100800
rosa_wichuraiana Rw7G008530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 437
AccIII TCCGGA 1 cut(s) 163
AciI CCGC 2 cut(s) 95, 213
AcsI RAATTY 1 cut(s) 354
AcuI CTGAAG 1 cut(s) 516
AfaI GTAC 2 cut(s) 179, 206
AfiI CCNNNNNNNGG 1 cut(s) 63
AgsI TTSAA 5 cut(s) 82, 130, 284, 386, 451
AhdI GACNNNNNGTC 1 cut(s) 265
AluBI AGCT 5 cut(s) 78, 126, 227, 241, 394
AluI AGCT 5 cut(s) 78, 126, 227, 241, 394
Alw21I GWGCWC 1 cut(s) 364
Ama87I CYCGRG 1 cut(s) 489
Aor13HI TCCGGA 1 cut(s) 163
AoxI GGCC 2 cut(s) 65, 368
ApeKI GCWGC 1 cut(s) 215
ApoI RAATTY 1 cut(s) 354
Asp700I GAANNNNTTC 1 cut(s) 354
AspLEI GCGC 1 cut(s) 438
AspS9I GGNCC 1 cut(s) 65
AsuHPI GGTGA 1 cut(s) 25
AvaI CYCGRG 1 cut(s) 489
Bbv12I GWGCWC 1 cut(s) 364
BbvI GCAGC 1 cut(s) 202
BccI CCATC 2 cut(s) 56, 85
BclI TGATCA 1 cut(s) 310
BfmI CTRYAG 1 cut(s) 36
BisI GCNGC 2 cut(s) 213, 216
BlpI GCTNAGC 1 cut(s) 237
BlsI GCNGC 2 cut(s) 214, 217
BmeRI GACNNNNNGTC 1 cut(s) 265
BmeT110I CYCGRG 1 cut(s) 489
BmgT120I GGNCC 1 cut(s) 65
BmiI GGNNCC 3 cut(s) 162, 168, 517
BmrI ACTGGG 1 cut(s) 19
BmsI GCATC 2 cut(s) 318, 469
BmuI ACTGGG 1 cut(s) 19
BpmI CTGGAG 1 cut(s) 444
Bpu1102I GCTNAGC 1 cut(s) 237
BpuEI CTTGAG 1 cut(s) 247
BsaJI CCNNGG 1 cut(s) 371
BsaWI WCCGGW 1 cut(s) 163
BsaXI ACNNNNNCTCC 2 cut(s) 417, 447
Bsc4I CCNNNNNNNGG 1 cut(s) 63
Bse1I ACTGG 3 cut(s) 14, 427, 431
BseAI TCCGGA 1 cut(s) 163
BseDI CCNNGG 1 cut(s) 371
BseGI GGATG 2 cut(s) 333, 484
BseLI CCNNNNNNNGG 1 cut(s) 63
BseMII CTCAG 1 cut(s) 346
BseNI ACTGG 3 cut(s) 14, 427, 431
BseRI GAGGAG 1 cut(s) 233
BseXI GCAGC 1 cut(s) 202
BshFI GGCC 2 cut(s) 67, 370
BsiHKAI GWGCWC 1 cut(s) 364
BsiHKCI CYCGRG 1 cut(s) 489
BsiSI CCGG 2 cut(s) 164, 219
BslI CCNNNNNNNGG 1 cut(s) 63
BsmI GAATGC 1 cut(s) 304
BsnI GGCC 2 cut(s) 67, 370
BsoBI CYCGRG 1 cut(s) 489
Bsp1286I GDGCHC 1 cut(s) 364
Bsp13I TCCGGA 1 cut(s) 163
Bsp143I GATC 1 cut(s) 310
Bsp1720I GCTNAGC 1 cut(s) 237
BspACI CCGC 2 cut(s) 95, 213
BspANI GGCC 2 cut(s) 67, 370
BspCNI CTCAG 1 cut(s) 345
BspEI TCCGGA 1 cut(s) 163
BspHI TCATGA 1 cut(s) 246
BspLI GGNNCC 3 cut(s) 162, 168, 517
BspQI GCTCTTC 1 cut(s) 110
BsrI ACTGG 3 cut(s) 14, 427, 431
BssECI CCNNGG 1 cut(s) 371
BssMI GATC 1 cut(s) 310
Bst4CI ACNGT 1 cut(s) 322
Bst6I CTCTTC 2 cut(s) 110, 236
BstC8I GCNNGC 1 cut(s) 396
BstDEI CTNAG 4 cut(s) 181, 237, 332, 416
BstF5I GGATG 2 cut(s) 333, 484
BstHHI GCGC 1 cut(s) 438
BstKTI GATC 1 cut(s) 313
BstMBI GATC 1 cut(s) 310
BstMWI GCNNNNNNNGC 3 cut(s) 25, 224, 233
BstSFI CTRYAG 1 cut(s) 36
BstV1I GCAGC 1 cut(s) 202
BsuRI GGCC 2 cut(s) 67, 370
BtsCI GGATG 2 cut(s) 333, 484
BtsIMutI CAGTG 2 cut(s) 318, 438
Cac8I GCNNGC 1 cut(s) 396
CciI TCATGA 1 cut(s) 246
CfoI GCGC 1 cut(s) 438
Cfr13I GGNCC 1 cut(s) 65
Csp6I GTAC 2 cut(s) 178, 205
CviAII CATG 5 cut(s) 196, 202, 247, 439, 512
CviQI GTAC 2 cut(s) 178, 205
DdeI CTNAG 4 cut(s) 181, 237, 332, 416
DpnI GATC 1 cut(s) 312
DpnII GATC 1 cut(s) 310
DriI GACNNNNNGTC 1 cut(s) 265
Eam1104I CTCTTC 2 cut(s) 110, 236
Eam1105I GACNNNNNGTC 1 cut(s) 265
EarI CTCTTC 2 cut(s) 110, 236
EciI GGCGGA 1 cut(s) 110
Eco57I CTGAAG 1 cut(s) 516
Eco88I CYCGRG 1 cut(s) 489
EcoT22I ATGCAT 1 cut(s) 484
FaeI CATG 5 cut(s) 199, 205, 250, 442, 515
FaiI YATR 8 cut(s) 54, 60, 197, 203, 248, 255, 440, 513
FatI CATG 5 cut(s) 195, 201, 246, 438, 511
FbaI TGATCA 1 cut(s) 310
Fnu4HI GCNGC 2 cut(s) 213, 216
FokI GGATG 2 cut(s) 340, 491
Fsp4HI GCNGC 2 cut(s) 213, 216
FspAI RTGCGCAY 1 cut(s) 437
FspI TGCGCA 1 cut(s) 437
GlaI GCGC 1 cut(s) 437
GluI GCNGC 2 cut(s) 213, 216
GsuI CTGGAG 1 cut(s) 444
HaeIII GGCC 2 cut(s) 67, 370
HapII CCGG 2 cut(s) 164, 219
HhaI GCGC 1 cut(s) 438
Hin1II CATG 5 cut(s) 199, 205, 250, 442, 515
Hin6I GCGC 1 cut(s) 436
HinP1I GCGC 1 cut(s) 436
HindIII AAGCTT 1 cut(s) 392
HinfI GANTC 3 cut(s) 260, 376, 386
HpaII CCGG 2 cut(s) 164, 219
HphI GGTGA 1 cut(s) 25
Hpy166II GTNNAC 1 cut(s) 474
Hpy188I TCNGA 1 cut(s) 327
Hpy188III TCNNGA 4 cut(s) 130, 164, 247, 338
Hpy8I GTNNAC 1 cut(s) 474
HpyCH4III ACNGT 1 cut(s) 322
HpyCH4IV ACGT 1 cut(s) 176
HpyCH4V TGCA 2 cut(s) 52, 482
HpyF10VI GCNNNNNNNGC 3 cut(s) 25, 224, 233
HpyF3I CTNAG 4 cut(s) 181, 237, 332, 416
HpySE526I ACGT 1 cut(s) 176
Hsp92II CATG 5 cut(s) 199, 205, 250, 442, 515
HspAI GCGC 1 cut(s) 436
Kpn2I TCCGGA 1 cut(s) 163
Ksp22I TGATCA 1 cut(s) 310
Kzo9I GATC 1 cut(s) 310
LguI GCTCTTC 1 cut(s) 110
LmnI GCTCC 3 cut(s) 166, 246, 307
LpnPI CCDG 6 cut(s) 14, 177, 232, 318, 408, 444
Lsp1109I GCAGC 1 cut(s) 202
LweI GCATC 2 cut(s) 318, 469
MaeII ACGT 1 cut(s) 176
MalI GATC 1 cut(s) 312
MboI GATC 1 cut(s) 310
MboII GAAGA 7 cut(s) 94, 100, 118, 127, 223, 362, 509
MfeI CAATTG 1 cut(s) 462
MhlI GDGCHC 1 cut(s) 364
MluCI AATT 3 cut(s) 275, 354, 462
MlyI GAGTC 2 cut(s) 254, 370
MmeI TCCRAC 1 cut(s) 81
Mph1103I ATGCAT 1 cut(s) 484
MroI TCCGGA 1 cut(s) 163
MroXI GAANNNNTTC 1 cut(s) 354
MslI CAYNNNNRTG 2 cut(s) 57, 200
MspA1I CMGCKG 1 cut(s) 215
MspI CCGG 2 cut(s) 164, 219
MunI CAATTG 1 cut(s) 462
Mva1269I GAATGC 1 cut(s) 304
MwoI GCNNNNNNNGC 3 cut(s) 25, 224, 233
NdeII GATC 1 cut(s) 310
NlaIII CATG 5 cut(s) 199, 205, 250, 442, 515
NlaIV GGNNCC 3 cut(s) 162, 168, 517
NmeAIII GCCGAG 1 cut(s) 396
NsbI TGCGCA 1 cut(s) 437
NsiI ATGCAT 1 cut(s) 484
PagI TCATGA 1 cut(s) 246
PciSI GCTCTTC 1 cut(s) 110
PctI GAATGC 1 cut(s) 304
PdmI GAANNNNTTC 1 cut(s) 354
PfeI GAWTC 1 cut(s) 386
PkrI GCNGC 2 cut(s) 214, 217
PleI GAGTC 2 cut(s) 254, 370
PpsI GAGTC 2 cut(s) 254, 370
PspN4I GGNNCC 3 cut(s) 162, 168, 517
PspPI GGNCC 1 cut(s) 65
RsaI GTAC 2 cut(s) 179, 206
RsaNI GTAC 2 cut(s) 178, 205
RseI CAYNNNNRTG 2 cut(s) 57, 200
SapI GCTCTTC 1 cut(s) 110
SatI GCNGC 2 cut(s) 213, 216
Sau3AI GATC 1 cut(s) 310
Sau96I GGNCC 1 cut(s) 65
SchI GAGTC 2 cut(s) 254, 370
SduI GDGCHC 1 cut(s) 364
SfaNI GCATC 2 cut(s) 318, 469
SfcI CTRYAG 1 cut(s) 36
SmiMI CAYNNNNRTG 2 cut(s) 57, 200
SmlI CTYRAG 1 cut(s) 262
SmoI CTYRAG 1 cut(s) 262
Sse9I AATT 3 cut(s) 275, 354, 462
SsiI CCGC 2 cut(s) 95, 213
TaaI ACNGT 1 cut(s) 322
TaiI ACGT 1 cut(s) 179
TaqI TCGA 1 cut(s) 358
TasI AATT 3 cut(s) 275, 354, 462
TauI GCSGC 1 cut(s) 215
TfiI GAWTC 1 cut(s) 386
TscAI CASTG 2 cut(s) 325, 438
TseI GCWGC 1 cut(s) 215
TspDTI ATGAA 2 cut(s) 20, 101
TspGWI ACGGA 2 cut(s) 369, 491
TspRI CASTG 2 cut(s) 325, 438
XapI RAATTY 1 cut(s) 354
XmnI GAANNNNTTC 1 cut(s) 354
Zsp2I ATGCAT 1 cut(s) 484
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.