Rh7CG102200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0011039
Physical Location & Seq
Forward (+)
7667983 .. 7670419
2437 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG102200.1

Sequence Viewer

Length: 513 bp
ATGAGAGGGCTGGTTTCTATAGGAGGGAGGCTGCGATTGCATACCTATGATGGGCCAAGTGAGAGCTTGAAGATGAAGATGGCGGAGTTGGAGAAGATGAGGAAGAGCAAGAGCTTCAAGAAACGAAAGAACAGAGTGTTCGTTGAGGTTCCGGAGCCTTTGACGTACTTAGACACAGCCACCATGCCTATGTATCTCGCCGCTGCCGGAATAGCTCTCTTCGCTAAGCTCCTCATGATGTATGATGACTCAAGGTCACAAGAATTGATTGAACGCAAGATAAGGAATGCTCCTGCTGATCAAGGCACTGTTCGGATGCTCGGTCGTGAGGAATGGGAAGAAATTCGAGCACAGAGGCCGAGGACTCCGTTTGAATCCAAGCTTGCTCGTCCAAATGCCCGTCTAAGAACTGGAGAACCAGTGCGCGTGGAGGATTTGAAAGATTGGACAATTGATGTGTTCACAGATGCATTTGCTCGGGCTGAAGAAAGTGTTAGACATGGTTCCAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

170

Amino Acids

19.62

Weight (kDa)

9.83

Isoelectric Point (pI)

53.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011039)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G04340
fragaria_vesca FvH4_5g09330 FvH4_5g09330 FvH4_5g09330
malus_domestica MD06G1132000.v1.1 MD14G1148400.v1.1
prunus_persica Prupe.5G143000_v2.0.a1
pyrus_communis pycom06g12360 pycom14g12310
rosa_chinensis RchiOBHm_Chr7g0188821
rosa_laevigata RLG00000004656
rosa_multiflora Rmu_ssc0000053.1_g000001
rosa_roxburghii Rroxscaffold_3G00265990
rosa_rugosa Rorug06G0494100 Rorug06G0494200
rosa_samantha Rh7AG099000 Rh7BG100700 Rh7CG102200 Rh7DG100800
rosa_wichuraiana Rw7G008530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 426
AccIII TCCGGA 1 cut(s) 151
AciI CCGC 2 cut(s) 83, 201
AcsI RAATTY 1 cut(s) 342
AcuI CTGAAG 1 cut(s) 504
AfaI GTAC 1 cut(s) 167
AfiI CCNNNNNNNGG 1 cut(s) 51
AgsI TTSAA 5 cut(s) 70, 118, 272, 374, 439
AhdI GACNNNNNGTC 1 cut(s) 253
AluBI AGCT 5 cut(s) 66, 114, 215, 229, 382
AluI AGCT 5 cut(s) 66, 114, 215, 229, 382
Alw21I GWGCWC 1 cut(s) 352
Ama87I CYCGRG 1 cut(s) 477
Aor13HI TCCGGA 1 cut(s) 151
AoxI GGCC 2 cut(s) 53, 356
ApeKI GCWGC 2 cut(s) 31, 203
ApoI RAATTY 1 cut(s) 342
Asp700I GAANNNNTTC 1 cut(s) 342
AspLEI GCGC 1 cut(s) 426
AspS9I GGNCC 1 cut(s) 53
AvaI CYCGRG 1 cut(s) 477
Bbv12I GWGCWC 1 cut(s) 352
BbvI GCAGC 2 cut(s) 18, 190
BccI CCATC 2 cut(s) 44, 73
BclI TGATCA 1 cut(s) 298
BfmI CTRYAG 1 cut(s) 18
BisI GCNGC 3 cut(s) 32, 201, 204
BlpI GCTNAGC 1 cut(s) 225
BlsI GCNGC 3 cut(s) 33, 202, 205
BmeRI GACNNNNNGTC 1 cut(s) 253
BmeT110I CYCGRG 1 cut(s) 477
BmgT120I GGNCC 1 cut(s) 53
BmiI GGNNCC 3 cut(s) 150, 156, 505
BmsI GCATC 2 cut(s) 306, 457
BpmI CTGGAG 1 cut(s) 432
Bpu1102I GCTNAGC 1 cut(s) 225
BpuEI CTTGAG 1 cut(s) 235
BsaJI CCNNGG 1 cut(s) 359
BsaWI WCCGGW 1 cut(s) 151
BsaXI ACNNNNNCTCC 2 cut(s) 405, 435
Bsc4I CCNNNNNNNGG 1 cut(s) 51
Bse1I ACTGG 2 cut(s) 415, 419
BseAI TCCGGA 1 cut(s) 151
BseDI CCNNGG 1 cut(s) 359
BseGI GGATG 1 cut(s) 321
BseLI CCNNNNNNNGG 1 cut(s) 51
BseNI ACTGG 2 cut(s) 415, 419
BseRI GAGGAG 1 cut(s) 221
BseXI GCAGC 2 cut(s) 18, 190
Bsh1236I CGCG 1 cut(s) 426
Bsh1285I CGRYCG 1 cut(s) 325
BshFI GGCC 2 cut(s) 55, 358
BsiEI CGRYCG 1 cut(s) 325
BsiHKAI GWGCWC 1 cut(s) 352
BsiHKCI CYCGRG 1 cut(s) 477
BsiSI CCGG 2 cut(s) 152, 207
BslI CCNNNNNNNGG 1 cut(s) 51
BsmI GAATGC 1 cut(s) 292
BsnI GGCC 2 cut(s) 55, 358
BsoBI CYCGRG 1 cut(s) 477
Bsp1286I GDGCHC 1 cut(s) 352
Bsp13I TCCGGA 1 cut(s) 151
Bsp143I GATC 1 cut(s) 298
Bsp1720I GCTNAGC 1 cut(s) 225
BspACI CCGC 2 cut(s) 83, 201
BspANI GGCC 2 cut(s) 55, 358
BspEI TCCGGA 1 cut(s) 151
BspFNI CGCG 1 cut(s) 426
BspHI TCATGA 1 cut(s) 234
BspLI GGNNCC 3 cut(s) 150, 156, 505
BspQI GCTCTTC 1 cut(s) 98
BsrI ACTGG 2 cut(s) 415, 419
BssECI CCNNGG 1 cut(s) 359
BssMI GATC 1 cut(s) 298
Bst4CI ACNGT 1 cut(s) 310
Bst6I CTCTTC 2 cut(s) 98, 224
BstC8I GCNNGC 1 cut(s) 384
BstDEI CTNAG 3 cut(s) 169, 225, 404
BstF5I GGATG 1 cut(s) 321
BstFNI CGCG 1 cut(s) 426
BstHHI GCGC 1 cut(s) 426
BstKTI GATC 1 cut(s) 301
BstMBI GATC 1 cut(s) 298
BstMCI CGRYCG 1 cut(s) 325
BstMWI GCNNNNNNNGC 3 cut(s) 37, 212, 221
BstSFI CTRYAG 1 cut(s) 18
BstUI CGCG 1 cut(s) 426
BstV1I GCAGC 2 cut(s) 18, 190
BsuRI GGCC 2 cut(s) 55, 358
BtsCI GGATG 1 cut(s) 321
BtsIMutI CAGTG 2 cut(s) 306, 426
Cac8I GCNNGC 1 cut(s) 384
CciI TCATGA 1 cut(s) 234
CfoI GCGC 1 cut(s) 426
Cfr13I GGNCC 1 cut(s) 53
Csp6I GTAC 1 cut(s) 166
CviAII CATG 3 cut(s) 184, 235, 500
CviQI GTAC 1 cut(s) 166
DdeI CTNAG 3 cut(s) 169, 225, 404
DpnI GATC 1 cut(s) 300
DpnII GATC 1 cut(s) 298
DriI GACNNNNNGTC 1 cut(s) 253
Eam1104I CTCTTC 2 cut(s) 98, 224
Eam1105I GACNNNNNGTC 1 cut(s) 253
EarI CTCTTC 2 cut(s) 98, 224
EciI GGCGGA 1 cut(s) 98
Eco57I CTGAAG 1 cut(s) 504
Eco88I CYCGRG 1 cut(s) 477
EcoT22I ATGCAT 1 cut(s) 472
FaeI CATG 3 cut(s) 187, 238, 503
FaiI YATR 8 cut(s) 20, 42, 48, 185, 191, 236, 243, 501
FatI CATG 3 cut(s) 183, 234, 499
FbaI TGATCA 1 cut(s) 298
Fnu4HI GCNGC 3 cut(s) 32, 201, 204
FokI GGATG 1 cut(s) 328
Fsp4HI GCNGC 3 cut(s) 32, 201, 204
GlaI GCGC 1 cut(s) 425
GluI GCNGC 3 cut(s) 32, 201, 204
GsuI CTGGAG 1 cut(s) 432
HaeIII GGCC 2 cut(s) 55, 358
HapII CCGG 2 cut(s) 152, 207
HhaI GCGC 1 cut(s) 426
Hin1II CATG 3 cut(s) 187, 238, 503
Hin6I GCGC 1 cut(s) 424
HinP1I GCGC 1 cut(s) 424
HindIII AAGCTT 1 cut(s) 380
HinfI GANTC 3 cut(s) 248, 364, 374
HpaII CCGG 2 cut(s) 152, 207
Hpy166II GTNNAC 1 cut(s) 462
Hpy188I TCNGA 1 cut(s) 315
Hpy188III TCNNGA 4 cut(s) 118, 152, 235, 326
Hpy8I GTNNAC 1 cut(s) 462
HpyCH4III ACNGT 1 cut(s) 310
HpyCH4IV ACGT 1 cut(s) 164
HpyCH4V TGCA 2 cut(s) 40, 470
HpyF10VI GCNNNNNNNGC 3 cut(s) 37, 212, 221
HpyF3I CTNAG 3 cut(s) 169, 225, 404
HpySE526I ACGT 1 cut(s) 164
Hsp92II CATG 3 cut(s) 187, 238, 503
HspAI GCGC 1 cut(s) 424
Kpn2I TCCGGA 1 cut(s) 151
Ksp22I TGATCA 1 cut(s) 298
Kzo9I GATC 1 cut(s) 298
LguI GCTCTTC 1 cut(s) 98
LmnI GCTCC 3 cut(s) 154, 234, 295
LpnPI CCDG 5 cut(s) 165, 220, 306, 396, 432
Lsp1109I GCAGC 2 cut(s) 18, 190
LweI GCATC 2 cut(s) 306, 457
MaeII ACGT 1 cut(s) 164
MaeIII GTNAC 1 cut(s) 255
MalI GATC 1 cut(s) 300
MboI GATC 1 cut(s) 298
MboII GAAGA 7 cut(s) 82, 88, 106, 115, 211, 350, 497
MfeI CAATTG 1 cut(s) 450
MhlI GDGCHC 1 cut(s) 352
MluCI AATT 3 cut(s) 263, 342, 450
MlyI GAGTC 2 cut(s) 242, 358
MmeI TCCRAC 1 cut(s) 69
MnlI CCTC 9 cut(s) 17, 21, 93, 139, 242, 322, 348, 354, 424
Mph1103I ATGCAT 1 cut(s) 472
MroI TCCGGA 1 cut(s) 151
MroXI GAANNNNTTC 1 cut(s) 342
MslI CAYNNNNRTG 2 cut(s) 45, 188
MspA1I CMGCKG 1 cut(s) 203
MspI CCGG 2 cut(s) 152, 207
MunI CAATTG 1 cut(s) 450
Mva1269I GAATGC 1 cut(s) 292
MvnI CGCG 1 cut(s) 426
MwoI GCNNNNNNNGC 3 cut(s) 37, 212, 221
NdeII GATC 1 cut(s) 298
NlaIII CATG 3 cut(s) 187, 238, 503
NlaIV GGNNCC 3 cut(s) 150, 156, 505
NmeAIII GCCGAG 1 cut(s) 384
NmuCI GTSAC 1 cut(s) 255
NsiI ATGCAT 1 cut(s) 472
PagI TCATGA 1 cut(s) 234
PciSI GCTCTTC 1 cut(s) 98
PctI GAATGC 1 cut(s) 292
PdmI GAANNNNTTC 1 cut(s) 342
PfeI GAWTC 1 cut(s) 374
PkrI GCNGC 3 cut(s) 33, 202, 205
PleI GAGTC 2 cut(s) 242, 358
PpsI GAGTC 2 cut(s) 242, 358
PspN4I GGNNCC 3 cut(s) 150, 156, 505
PspPI GGNCC 1 cut(s) 53
RsaI GTAC 1 cut(s) 167
RsaNI GTAC 1 cut(s) 166
RseI CAYNNNNRTG 2 cut(s) 45, 188
SapI GCTCTTC 1 cut(s) 98
SatI GCNGC 3 cut(s) 32, 201, 204
Sau3AI GATC 1 cut(s) 298
Sau96I GGNCC 1 cut(s) 53
SchI GAGTC 2 cut(s) 242, 358
SduI GDGCHC 1 cut(s) 352
SetI ASST 9 cut(s) 47, 68, 116, 150, 167, 217, 231, 257, 384
SfaNI GCATC 2 cut(s) 306, 457
SfcI CTRYAG 1 cut(s) 18
SmiMI CAYNNNNRTG 2 cut(s) 45, 188
SmlI CTYRAG 1 cut(s) 250
SmoI CTYRAG 1 cut(s) 250
Sse9I AATT 3 cut(s) 263, 342, 450
SsiI CCGC 2 cut(s) 83, 201
TaaI ACNGT 1 cut(s) 310
TaiI ACGT 1 cut(s) 167
TaqI TCGA 1 cut(s) 346
TaqII GACCGA 1 cut(s) 311
TasI AATT 3 cut(s) 263, 342, 450
TauI GCSGC 1 cut(s) 203
TfiI GAWTC 1 cut(s) 374
TscAI CASTG 2 cut(s) 313, 426
TseFI GTSAC 1 cut(s) 255
TseI GCWGC 2 cut(s) 31, 203
Tsp45I GTSAC 1 cut(s) 255
TspDTI ATGAA 1 cut(s) 89
TspGWI ACGGA 1 cut(s) 357
TspRI CASTG 2 cut(s) 313, 426
XapI RAATTY 1 cut(s) 342
XmnI GAANNNNTTC 1 cut(s) 342
Zsp2I ATGCAT 1 cut(s) 472
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.