AT2G04940

Belongs to the phospholipid scramblase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0017071
Physical Location & Seq
Reverse (-)
1735963 .. 1740568
4606 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G04940.1

Sequence Viewer

Length: 1179 bp
ATGATCTACCTCTCTAGACGCTCACTCTCTTCTCTTCTCCGATCCGGTTTCAATCTCCGCGGCGATCTTACAGCAGCAGCTGTCTCTTGTTCCTCTCTCTTCTCCGACGCGGACGGTGGGATTAAGAAGTTACACTCGCGAGCTGGGAATGCAGTGTTATGGAGAAATAGTCAGCTATGTAGTTCTCAAGGAAGCTTTTTTGGACGAGGAGGACAAGTCTCAGGTTCTGTGTTTCGATGTTTCTGCAGTGGTAGTGATACTTCTCCTCCTAGCTTGGATCGGAAGTTTTTGGCTCAGCTATGGGTTGCAGATAAGAAAAAGCTAAAGGCTATGGAAAAGCGATATAAGAAAGCTTCTAAGCATAGGAACTACACTGAAAATGATGGATTTGATGTCCATTTTGAAACTGTTGAGCCTACAGTGGAGCAACCACCGGTTAGCCAGTCTATGTCTGGTCTTCTGAAGCCTAAAACTTCTGATGAGGCCAAAATTGCAACTCTGCTTGCACGATCGAATTTGCTGGTTACAAGAGATATTGAATGGGCAAATCTGGTTCTTGGTTTTGAACAGGAAAATCGCTATATTGTAGTAGATGTTTGCTATCCTGAGGCACCTGTGGGGTCTATCCGAGAACAAAGCAATTTACTGGCGCGGCAGCTGCTTCGTACCCGGCGCCCATTTGTTGCTTCCATAACTGATGCTTTGGGTAATGAGCTTTTCCGGGTTCGTCGACCTTTCTGGTGGCTCACAAGTTCAATATATGCTGAAATTGATGGAGAGGAAATTGGTGTTGTTCATCGACGATGGCATCTATGGAGAAGAATTTATGATTTATACCTGGGGAACAACCAGTTTGCAGTGGTAGAAAATCCTGGGTTTTGGAATTGGACATTTACAGTGAAGGATGCTGATGGGGAAGTCTTAGCCCAAATAGATCGTGATTGGAGAGGTTTTGGCTTTGAGATATTCACAGATGCTGGGCAGTACGTGATCCGATTTGGAAAAGCTGATGCTGCAGCCAAGACCGGCCCTGCGACACTGGTAGAAGAGTTAGAAGTGAAACGGCCATTGACTTTGTCAGAAAGAGCTGTTGTCCTTACGCTTGCGATTTCACTAGATAATGATTACTTTTCAAGACATGGTGGCTGGGGAATCCCATTCATGGCGGTGGGTGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Scramblase

Protein Analysis

392

Amino Acids

44.12

Weight (kDa)

8.86

Isoelectric Point (pI)

47.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Scramblase PF03803 150 - 379 2.6e-69 Scramblase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017071)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G04940
fragaria_vesca FvH4_7g33592
malus_domestica MD01G1233700.v1.1 MD07G1305800.v1.1
prunus_persica Prupe.2G323900_v2.0.a1
pyrus_communis pycom01g24200
rosa_chinensis RchiOBHm_Chr1g0383851
rosa_laevigata RLG00000026091
rosa_samantha Rh1AG468500 Rh1BG426200 Rh1CG438900 Rh1DG459000
rosa_wichuraiana Rw1G040390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 610, 672
AccI GTMKAC 1 cut(s) 730
AccII CGCG 4 cut(s) 60, 110, 139, 652
AciI CCGC 5 cut(s) 58, 60, 110, 652, 1166
AclWI GGATC 3 cut(s) 36, 285, 985
AcoI YGGCCR 1 cut(s) 1064
AcsI RAATTY 2 cut(s) 514, 822
AcuI CTGAAG 1 cut(s) 482
AcyI GRCGYC 1 cut(s) 673
AfaI GTAC 2 cut(s) 667, 986
AfiI CCNNNNNNNGG 1 cut(s) 1162
AgeI ACCGGT 1 cut(s) 433
AgsI TTSAA 6 cut(s) 52, 404, 539, 566, 756, 1134
AjnI CCWGG 2 cut(s) 837, 871
Alw26I GTCTC 2 cut(s) 88, 223
AlwI GGATC 3 cut(s) 36, 285, 985
AlwNI CAGNNNCTG 3 cut(s) 80, 227, 977
AoxI GGCC 3 cut(s) 483, 1027, 1064
ApeKI GCWGC 6 cut(s) 74, 77, 655, 658, 1013, 1016
ApoI RAATTY 2 cut(s) 514, 822
AsiGI ACCGGT 1 cut(s) 433
AspLEI GCGC 2 cut(s) 652, 675
AspS9I GGNCC 1 cut(s) 1028
AsuC2I CCSGG 2 cut(s) 670, 722
AxyI CCTNAGG 1 cut(s) 606
BanI GGYRCC 2 cut(s) 610, 672
BarI GAAGNNNNNNTAC 2 cut(s) 244, 276
BbsI GAAGAC 1 cut(s) 449
BbvI GCAGC 6 cut(s) 86, 89, 645, 667, 1000, 1028
BccI CCATC 4 cut(s) 377, 767, 798, 905
BceAI ACGGC 1 cut(s) 1079
BcgI CGANNNNNNTGC 4 cut(s) 225, 259, 644, 678
BciT130I CCWGG 2 cut(s) 839, 873
BcnI CCSGG 2 cut(s) 670, 722
BcoDI GTCTC 2 cut(s) 88, 223
BfaI CTAG 3 cut(s) 15, 270, 1115
BfmI CTRYAG 3 cut(s) 244, 417, 1014
BfoI RGCGCY 1 cut(s) 676
BisI GCNGC 8 cut(s) 61, 75, 78, 653, 656, 659, 1014, 1017
BlpI GCTNAGC 1 cut(s) 294
BlsI GCNGC 8 cut(s) 62, 76, 79, 654, 657, 660, 1015, 1018
Bme1390I CCNGG 4 cut(s) 670, 722, 839, 873
BmgT120I GGNCC 1 cut(s) 1028
BmiI GGNNCC 2 cut(s) 612, 674
BmrFI CCNGG 4 cut(s) 670, 722, 839, 873
BmsI GCATC 5 cut(s) 688, 817, 895, 964, 1000
BpiI GAAGAC 1 cut(s) 449
Bpu1102I GCTNAGC 1 cut(s) 294
BpuEI CTTGAG 1 cut(s) 171
BpuMI CCSGG 2 cut(s) 670, 722
BsaAI YACGTR 1 cut(s) 988
BsaHI GRCGYC 1 cut(s) 673
BsaJI CCNNGG 3 cut(s) 58, 838, 872
BsaWI WCCGGW 2 cut(s) 44, 433
BsaXI ACNNNNNCTCC 6 cut(s) 154, 184, 201, 231, 250, 280
Bsc4I CCNNNNNNNGG 1 cut(s) 1162
Bse118I RCCGGY 2 cut(s) 433, 1025
Bse1I ACTGG 4 cut(s) 442, 651, 850, 1044
Bse21I CCTNAGG 1 cut(s) 606
BseBI CCWGG 2 cut(s) 839, 873
BseDI CCNNGG 3 cut(s) 58, 838, 872
BseGI GGATG 1 cut(s) 910
BseLI CCNNNNNNNGG 1 cut(s) 1162
BseMII CTCAG 3 cut(s) 234, 308, 597
BseNI ACTGG 4 cut(s) 442, 651, 850, 1044
BseRI GAGGAG 2 cut(s) 222, 255
BseXI GCAGC 6 cut(s) 86, 89, 645, 667, 1000, 1028
BseYI CCCAGC 3 cut(s) 143, 977, 1146
Bsh1236I CGCG 4 cut(s) 60, 110, 139, 652
Bsh1285I CGRYCG 1 cut(s) 512
BshFI GGCC 3 cut(s) 485, 1029, 1066
BshNI GGYRCC 2 cut(s) 610, 672
BshTI ACCGGT 1 cut(s) 433
BsiEI CGRYCG 1 cut(s) 512
BsiSI CCGG 5 cut(s) 45, 434, 670, 721, 1026
BslI CCNNNNNNNGG 1 cut(s) 1162
BsmAI GTCTC 2 cut(s) 88, 223
BsmI GAATGC 1 cut(s) 154
BsnI GGCC 3 cut(s) 485, 1029, 1066
Bsp143I GATC 7 cut(s) 3, 41, 64, 277, 509, 934, 990
Bsp1720I GCTNAGC 1 cut(s) 294
Bsp68I TCGCGA 1 cut(s) 139
BspACI CCGC 5 cut(s) 58, 60, 110, 652, 1166
BspANI GGCC 3 cut(s) 485, 1029, 1066
BspCNI CTCAG 3 cut(s) 233, 307, 598
BspFNI CGCG 4 cut(s) 60, 110, 139, 652
BspLI GGNNCC 2 cut(s) 612, 674
BspMAI CTGCAG 2 cut(s) 248, 1018
BspPI GGATC 3 cut(s) 36, 285, 985
BspT107I GGYRCC 2 cut(s) 610, 672
BsrFI RCCGGY 2 cut(s) 433, 1025
BsrI ACTGG 4 cut(s) 442, 651, 850, 1044
BssAI RCCGGY 2 cut(s) 433, 1025
BssECI CCNNGG 3 cut(s) 58, 838, 872
BssMI GATC 7 cut(s) 3, 41, 64, 277, 509, 934, 990
BssNI GRCGYC 1 cut(s) 673
Bst2UI CCWGG 2 cut(s) 839, 873
Bst4CI ACNGT 4 cut(s) 116, 409, 421, 898
Bst6I CTCTTC 4 cut(s) 34, 39, 104, 1041
BstACI GRCGYC 1 cut(s) 673
BstBAI YACGTR 1 cut(s) 988
BstC8I GCNNGC 3 cut(s) 141, 504, 1104
BstDEI CTNAG 5 cut(s) 220, 294, 357, 606, 922
BstDSI CCRYGG 1 cut(s) 58
BstF5I GGATG 1 cut(s) 910
BstFNI CGCG 4 cut(s) 60, 110, 139, 652
BstH2I RGCGCY 1 cut(s) 676
BstHHI GCGC 2 cut(s) 652, 675
BstKTI GATC 7 cut(s) 6, 44, 67, 280, 512, 937, 993
BstMAI GTCTC 2 cut(s) 88, 223
BstMBI GATC 7 cut(s) 3, 41, 64, 277, 509, 934, 990
BstMCI CGRYCG 1 cut(s) 512
BstMWI GCNNNNNNNGC 4 cut(s) 149, 491, 658, 1013
BstNI CCWGG 2 cut(s) 839, 873
BstSCI CCNGG 4 cut(s) 668, 720, 837, 871
BstSFI CTRYAG 3 cut(s) 244, 417, 1014
BstUI CGCG 4 cut(s) 60, 110, 139, 652
BstV1I GCAGC 6 cut(s) 86, 89, 645, 667, 1000, 1028
BstV2I GAAGAC 1 cut(s) 449
Bsu36I CCTNAGG 1 cut(s) 606
BsuRI GGCC 3 cut(s) 485, 1029, 1066
BtgI CCRYGG 1 cut(s) 58
BtsCI GGATG 1 cut(s) 910
BtsI GCAGTG 3 cut(s) 159, 253, 864
BtsIMutI CAGTG 7 cut(s) 159, 253, 372, 426, 864, 903, 1037
BtuMI TCGCGA 1 cut(s) 139
Cac8I GCNNGC 3 cut(s) 141, 504, 1104
CaiI CAGNNNCTG 3 cut(s) 80, 227, 977
CfoI GCGC 2 cut(s) 652, 675
Cfr10I RCCGGY 2 cut(s) 433, 1025
Cfr13I GGNCC 1 cut(s) 1028
Cfr42I CCGCGG 1 cut(s) 61
CseI GACGC 2 cut(s) 27, 116
Csp6I GTAC 2 cut(s) 666, 985
CspAI ACCGGT 1 cut(s) 433
CviAII CATG 2 cut(s) 1139, 1162
CviQI GTAC 2 cut(s) 666, 985
DdeI CTNAG 5 cut(s) 220, 294, 357, 606, 922
DinI GGCGCC 1 cut(s) 674
DpnI GATC 7 cut(s) 5, 43, 66, 279, 511, 936, 992
DpnII GATC 7 cut(s) 3, 41, 64, 277, 509, 934, 990
EaeI YGGCCR 1 cut(s) 1064
Eam1104I CTCTTC 4 cut(s) 34, 39, 104, 1041
EarI CTCTTC 4 cut(s) 34, 39, 104, 1041
Eco57I CTGAAG 1 cut(s) 482
Eco81I CCTNAGG 1 cut(s) 606
EcoRII CCWGG 2 cut(s) 837, 871
EgeI GGCGCC 1 cut(s) 674
EheI GGCGCC 1 cut(s) 674
FaeI CATG 2 cut(s) 1142, 1165
FatI CATG 2 cut(s) 1138, 1161
FblI GTMKAC 1 cut(s) 730
Fnu4HI GCNGC 8 cut(s) 61, 75, 78, 653, 656, 659, 1014, 1017
FokI GGATG 1 cut(s) 917
Fsp4HI GCNGC 8 cut(s) 61, 75, 78, 653, 656, 659, 1014, 1017
FspBI CTAG 3 cut(s) 15, 270, 1115
GlaI GCGC 2 cut(s) 651, 674
GluI GCNGC 8 cut(s) 61, 75, 78, 653, 656, 659, 1014, 1017
GsaI CCCAGC 3 cut(s) 147, 981, 1150
HaeII RGCGCY 1 cut(s) 676
HaeIII GGCC 3 cut(s) 485, 1029, 1066
HapII CCGG 5 cut(s) 45, 434, 670, 721, 1026
HgaI GACGC 2 cut(s) 27, 116
HhaI GCGC 2 cut(s) 652, 675
Hin1I GRCGYC 1 cut(s) 673
Hin1II CATG 2 cut(s) 1142, 1165
Hin6I GCGC 2 cut(s) 650, 673
HinP1I GCGC 2 cut(s) 650, 673
HincII GTYRAC 1 cut(s) 731
HindII GTYRAC 1 cut(s) 731
HindIII AAGCTT 2 cut(s) 193, 351
HinfI GANTC 1 cut(s) 1152
HpaII CCGG 5 cut(s) 45, 434, 670, 721, 1026
Hpy166II GTNNAC 1 cut(s) 731
Hpy188I TCNGA 8 cut(s) 41, 106, 282, 462, 478, 629, 995, 1081
Hpy188III TCNNGA 5 cut(s) 15, 138, 605, 938, 1134
Hpy8I GTNNAC 1 cut(s) 731
Hpy99I CGWCG 3 cut(s) 110, 732, 804
HpyAV CCTTC 1 cut(s) 895
HpyCH4III ACNGT 4 cut(s) 116, 409, 421, 898
HpyCH4IV ACGT 1 cut(s) 987
HpyCH4V TGCA 7 cut(s) 152, 246, 308, 494, 506, 857, 1016
HpyF10VI GCNNNNNNNGC 4 cut(s) 149, 491, 658, 1013
HpyF3I CTNAG 5 cut(s) 220, 294, 357, 606, 922
HpySE526I ACGT 1 cut(s) 987
Hsp92I GRCGYC 1 cut(s) 673
Hsp92II CATG 2 cut(s) 1142, 1165
HspAI GCGC 2 cut(s) 650, 673
KasI GGCGCC 1 cut(s) 672
KspI CCGCGG 1 cut(s) 61
Kzo9I GATC 7 cut(s) 3, 41, 64, 277, 509, 934, 990
LmnI GCTCC 1 cut(s) 424
Lsp1109I GCAGC 6 cut(s) 86, 89, 645, 667, 1000, 1028
LweI GCATC 5 cut(s) 688, 817, 895, 964, 1000
MaeI CTAG 3 cut(s) 15, 270, 1115
MaeII ACGT 1 cut(s) 987
MaeIII GTNAC 2 cut(s) 129, 523
MalI GATC 7 cut(s) 5, 43, 66, 279, 511, 936, 992
MboI GATC 7 cut(s) 3, 41, 64, 277, 509, 934, 990
MboII GAAGA 6 cut(s) 21, 26, 91, 449, 831, 1058
MluCI AATT 7 cut(s) 489, 514, 640, 768, 783, 822, 883
Mly113I GGCGCC 1 cut(s) 673
MmeI TCCRAC 1 cut(s) 129
MnlI CCTC 9 cut(s) 20, 103, 200, 203, 276, 475, 601, 772, 941
MseI TTAA 1 cut(s) 123
MslI CAYNNNNRTG 1 cut(s) 1166
MspA1I CMGCKG 3 cut(s) 60, 80, 658
MspI CCGG 5 cut(s) 45, 434, 670, 721, 1026
MspR9I CCNGG 4 cut(s) 670, 722, 839, 873
Mva1269I GAATGC 1 cut(s) 154
MvaI CCWGG 2 cut(s) 839, 873
MvnI CGCG 4 cut(s) 60, 110, 139, 652
MwoI GCNNNNNNNGC 4 cut(s) 149, 491, 658, 1013
NarI GGCGCC 1 cut(s) 673
NciI CCSGG 2 cut(s) 670, 722
NdeII GATC 7 cut(s) 3, 41, 64, 277, 509, 934, 990
NlaIII CATG 2 cut(s) 1142, 1165
NlaIV GGNNCC 2 cut(s) 612, 674
NruI TCGCGA 1 cut(s) 139
PctI GAATGC 1 cut(s) 154
PfeI GAWTC 1 cut(s) 1152
PflFI GACNNNGTC 1 cut(s) 1075
PinAI ACCGGT 1 cut(s) 433
PkrI GCNGC 8 cut(s) 62, 76, 79, 654, 657, 660, 1015, 1018
Ple19I CGATCG 1 cut(s) 512
PluTI GGCGCC 1 cut(s) 676
Ppu21I YACGTR 1 cut(s) 988
Psp6I CCWGG 2 cut(s) 837, 871
PspFI CCCAGC 3 cut(s) 143, 977, 1146
PspGI CCWGG 2 cut(s) 837, 871
PspN4I GGNNCC 2 cut(s) 612, 674
PspPI GGNCC 1 cut(s) 1028
PstI CTGCAG 2 cut(s) 248, 1018
PstNI CAGNNNCTG 3 cut(s) 80, 227, 977
PsyI GACNNNGTC 1 cut(s) 1075
PvuI CGATCG 1 cut(s) 512
PvuII CAGCTG 2 cut(s) 80, 658
RruI TCGCGA 1 cut(s) 139
RsaI GTAC 2 cut(s) 667, 986
RsaNI GTAC 2 cut(s) 666, 985
RseI CAYNNNNRTG 1 cut(s) 1166
SacII CCGCGG 1 cut(s) 61
SalI GTCGAC 1 cut(s) 729
SaqAI TTAA 1 cut(s) 123
SatI GCNGC 8 cut(s) 61, 75, 78, 653, 656, 659, 1014, 1017
Sau3AI GATC 7 cut(s) 3, 41, 64, 277, 509, 934, 990
Sau96I GGNCC 1 cut(s) 1028
ScrFI CCNGG 4 cut(s) 670, 722, 839, 873
SfaNI GCATC 5 cut(s) 688, 817, 895, 964, 1000
SfcI CTRYAG 3 cut(s) 244, 417, 1014
SfoI GGCGCC 1 cut(s) 674
Sfr303I CCGCGG 1 cut(s) 61
SgrBI CCGCGG 1 cut(s) 61
SmiMI CAYNNNNRTG 1 cut(s) 1166
SmlI CTYRAG 1 cut(s) 186
SmoI CTYRAG 1 cut(s) 186
Sse9I AATT 7 cut(s) 489, 514, 640, 768, 783, 822, 883
SsiI CCGC 5 cut(s) 58, 60, 110, 652, 1166
SspDI GGCGCC 1 cut(s) 672
SspMI CTAG 3 cut(s) 15, 270, 1115
StyD4I CCNGG 4 cut(s) 668, 720, 837, 871
TaaI ACNGT 4 cut(s) 116, 409, 421, 898
TaiI ACGT 1 cut(s) 990
TaqI TCGA 4 cut(s) 235, 512, 730, 799
TasI AATT 7 cut(s) 489, 514, 640, 768, 783, 822, 883
TauI GCSGC 2 cut(s) 63, 655
TfiI GAWTC 1 cut(s) 1152
Tru1I TTAA 1 cut(s) 123
Tru9I TTAA 1 cut(s) 123
TscAI CASTG 7 cut(s) 159, 253, 379, 426, 864, 903, 1044
TseI GCWGC 6 cut(s) 74, 77, 655, 658, 1013, 1016
TspDTI ATGAA 2 cut(s) 785, 1150
TspRI CASTG 7 cut(s) 159, 253, 379, 426, 864, 903, 1044
Tth111I GACNNNGTC 1 cut(s) 1075
XapI RAATTY 2 cut(s) 514, 822
XbaI TCTAGA 1 cut(s) 14
XcmI CCANNNNNNNNNTGG 1 cut(s) 449
XmiI GTMKAC 1 cut(s) 730
XspI CTAG 3 cut(s) 15, 270, 1115
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.