Rh1AG468500

Belongs to the phospholipid scramblase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0017071
Physical Location & Seq
Reverse (-)
68192859 .. 68196220
3362 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG468500.1

Sequence Viewer

Length: 1011 bp
ATGAATTGGAGAAGTAGTTGGCTTAGCCTCACTAAGGTTTACAAAGCTGCGGCAGCAGATTCCAAATGTGGCTCTTCCTTGTGGTCAGGGCTAGCTTTGTCTCGGAAATTTGGAGATAAGGCTAAGGCTGATACTGGGTTTGAGCTGAATAGGGACTTCCTTGTACAGCTATGGATGGCGGATAAGGAAATGGAGCAGTTTCGGAGAAAATCGAGACGGAGGGCTGTTGAGCAAGATGAGAATAGCGTGGTTGGGAAGCAACCACCTGTGAGCCAATCCATCTCGGGATATCTGAAGCCGGAATCTCCAGAAGAGGTCCAGGTGATGCCTCTTCTTGCTAGATCAAATATGCTCGTTACTAGGAATATAGAGTGGGCAAATCTTATGCTTGGGTTTGAGCAGGAAAATCGGTATGCCATAGTAGATGTATGCTATCCACAATCGCCTGTAGGTTTCATTCGTGAGGAGAGTCATGTTATCATGAGACAGTTACTTCGCCAGCGGCGTCCTTTTGTTGCTCGAGTAACTGATGGCATGGGTAATGAGCTCTTTAGGGTTCGCAGGCCTTTTTGGTGGATAAACAGCTCAATTTATGCAGAGATCAATGGTAAGGAAGTTGGTGTGGTTCACAGACGATGGCATTTGTGGAGAAGGATATATGATTTGTACCTAGGGAATAAACAATTTGCAGTTGTTGAAAATCCTGGATTCTGGCATTGGACATTTACTTTGAAGGACATTGATGGGGGTGTTTTGGCTGAGATAGATCGTGATTGGAGGGGTTTTGGCTTTGAGCTGTTTACTGATGCTGGGCAATATGTGATTCGGTTTGGGAGCTCTGATCCCAGCTCCAAGATAGGCCTTGCTAGCCAGATTGAAGAGTTGGAAGTAGTTCGCCCATTGACTCTGTCAGAGAGAGCTGTAACTCTTGCTCTTGCTATATCGTTGGATAACGACTATTTTTCAAGACATGGTGGATGGGGAATACCTTATTTTGATGTAGGTGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Scramblase

Protein Analysis

336

Amino Acids

38.78

Weight (kDa)

8.43

Isoelectric Point (pI)

60.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Scramblase PF03803 100 - 323 3.4e-63 Scramblase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017071)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G04940
fragaria_vesca FvH4_7g33592
malus_domestica MD01G1233700.v1.1 MD07G1305800.v1.1
prunus_persica Prupe.2G323900_v2.0.a1
pyrus_communis pycom01g24200
rosa_chinensis RchiOBHm_Chr1g0383851
rosa_laevigata RLG00000026091
rosa_samantha Rh1AG468500 Rh1BG426200 Rh1CG438900 Rh1DG459000
rosa_wichuraiana Rw1G040390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 50, 179, 502
AclWI GGATC 1 cut(s) 836
AcsI RAATTY 1 cut(s) 107
AcuI CTGAAG 1 cut(s) 314
AcyI GRCGYC 1 cut(s) 505
AfaI GTAC 2 cut(s) 165, 668
AfiI CCNNNNNNNGG 1 cut(s) 34
AgsI TTSAA 4 cut(s) 698, 733, 878, 966
AjnI CCWGG 2 cut(s) 318, 703
Alw21I GWGCWC 2 cut(s) 549, 839
Alw26I GTCTC 3 cut(s) 105, 208, 478
AlwI GGATC 1 cut(s) 836
Ama87I CYCGRG 2 cut(s) 283, 519
AoxI GGCC 2 cut(s) 563, 859
ApeKI GCWGC 2 cut(s) 47, 53
ApoI RAATTY 1 cut(s) 107
ArsI GACNNNNNNTTYG 4 cut(s) 477, 509, 712, 744
Asp700I GAANNNNTTC 1 cut(s) 891
AspA2I CCTAGG 1 cut(s) 670
AspS9I GGNCC 1 cut(s) 316
AsuHPI GGTGA 1 cut(s) 334
AsuNHI GCTAGC 2 cut(s) 91, 866
AvaI CYCGRG 2 cut(s) 283, 519
AvaII GGWCC 1 cut(s) 316
AvrII CCTAGG 1 cut(s) 670
BanII GRGCYC 2 cut(s) 549, 839
Bbv12I GWGCWC 2 cut(s) 549, 839
BbvI GCAGC 2 cut(s) 34, 65
BccI CCATC 6 cut(s) 169, 287, 524, 630, 737, 972
BcgI CGANNNNNNTGC 2 cut(s) 389, 423
BciT130I CCWGG 2 cut(s) 320, 705
BcoDI GTCTC 3 cut(s) 105, 208, 478
BfaI CTAG 5 cut(s) 92, 339, 360, 671, 867
BfmI CTRYAG 1 cut(s) 447
BisI GCNGC 4 cut(s) 48, 51, 54, 503
BlnI CCTAGG 1 cut(s) 670
BlpI GCTNAGC 1 cut(s) 23
BlsI GCNGC 4 cut(s) 49, 52, 55, 504
Bme1390I CCNGG 2 cut(s) 320, 705
Bme18I GGWCC 1 cut(s) 316
BmeT110I CYCGRG 2 cut(s) 283, 519
BmgT120I GGNCC 1 cut(s) 316
BmrFI CCNGG 2 cut(s) 320, 705
BmrI ACTGGG 1 cut(s) 144
BmsI GCATC 2 cut(s) 315, 796
BmtI GCTAGC 2 cut(s) 95, 870
BmuI ACTGGG 1 cut(s) 144
BpmI CTGGAG 1 cut(s) 291
Bpu10I CCTNAGC 1 cut(s) 123
Bpu1102I GCTNAGC 1 cut(s) 23
BsaHI GRCGYC 1 cut(s) 505
BsaJI CCNNGG 1 cut(s) 670
BsaXI ACNNNNNCTCC 1 cut(s) 31
Bsc4I CCNNNNNNNGG 1 cut(s) 34
Bse1I ACTGG 1 cut(s) 139
BseBI CCWGG 2 cut(s) 320, 705
BseDI CCNNGG 1 cut(s) 670
BseGI GGATG 2 cut(s) 180, 983
BseLI CCNNNNNNNGG 1 cut(s) 34
BseMII CTCAG 1 cut(s) 750
BseNI ACTGG 1 cut(s) 139
BseRI GAGGAG 1 cut(s) 479
BseXI GCAGC 2 cut(s) 34, 65
BseYI CCCAGC 2 cut(s) 809, 845
BshFI GGCC 2 cut(s) 565, 861
BsiHKAI GWGCWC 2 cut(s) 549, 839
BsiHKCI CYCGRG 2 cut(s) 283, 519
BsiSI CCGG 1 cut(s) 299
BslFI GGGAC 1 cut(s) 167
BslI CCNNNNNNNGG 1 cut(s) 34
BsmAI GTCTC 3 cut(s) 105, 208, 478
BsmBI CGTCTC 1 cut(s) 208
BsmFI GGGAC 1 cut(s) 167
BsnI GGCC 2 cut(s) 565, 861
BsoBI CYCGRG 2 cut(s) 283, 519
Bsp1286I GDGCHC 2 cut(s) 549, 839
Bsp1407I TGTACA 1 cut(s) 163
Bsp143I GATC 4 cut(s) 341, 600, 766, 841
Bsp1720I GCTNAGC 1 cut(s) 23
BspACI CCGC 3 cut(s) 50, 179, 502
BspANI GGCC 2 cut(s) 565, 861
BspCNI CTCAG 1 cut(s) 751
BspHI TCATGA 1 cut(s) 480
BspOI GCTAGC 2 cut(s) 95, 870
BspPI GGATC 1 cut(s) 836
BspQI GCTCTTC 1 cut(s) 79
BsrGI TGTACA 1 cut(s) 163
BsrI ACTGG 1 cut(s) 139
BssECI CCNNGG 1 cut(s) 670
BssMI GATC 4 cut(s) 341, 600, 766, 841
BssNI GRCGYC 1 cut(s) 505
BssT1I CCWWGG 1 cut(s) 670
Bst2UI CCWGG 2 cut(s) 320, 705
Bst4CI ACNGT 1 cut(s) 489
Bst6I CTCTTC 4 cut(s) 79, 306, 336, 873
BstACI GRCGYC 1 cut(s) 505
BstAUI TGTACA 1 cut(s) 163
BstC8I GCNNGC 4 cut(s) 93, 500, 563, 868
BstDEI CTNAG 4 cut(s) 23, 33, 123, 759
BstENI CCTNNNNNAGG 1 cut(s) 32
BstF5I GGATG 2 cut(s) 180, 983
BstKTI GATC 4 cut(s) 344, 603, 769, 844
BstMAI GTCTC 3 cut(s) 105, 208, 478
BstMBI GATC 4 cut(s) 341, 600, 766, 841
BstMWI GCNNNNNNNGC 2 cut(s) 53, 867
BstNI CCWGG 2 cut(s) 320, 705
BstSCI CCNGG 2 cut(s) 318, 703
BstSFI CTRYAG 1 cut(s) 447
BstV1I GCAGC 2 cut(s) 34, 65
BsuRI GGCC 2 cut(s) 565, 861
BtsCI GGATG 2 cut(s) 180, 983
Cac8I GCNNGC 4 cut(s) 93, 500, 563, 868
CciI TCATGA 1 cut(s) 480
Cfr13I GGNCC 1 cut(s) 316
CseI GACGC 1 cut(s) 494
Csp6I GTAC 2 cut(s) 164, 667
CviAII CATG 4 cut(s) 473, 481, 535, 971
CviQI GTAC 2 cut(s) 164, 667
DdeI CTNAG 4 cut(s) 23, 33, 123, 759
DpnI GATC 4 cut(s) 343, 602, 768, 843
DpnII GATC 4 cut(s) 341, 600, 766, 841
Eam1104I CTCTTC 4 cut(s) 79, 306, 336, 873
EarI CTCTTC 4 cut(s) 79, 306, 336, 873
EciI GGCGGA 1 cut(s) 194
Ecl136II GAGCTC 2 cut(s) 547, 837
Eco130I CCWWGG 1 cut(s) 670
Eco147I AGGCCT 2 cut(s) 565, 861
Eco24I GRGCYC 2 cut(s) 549, 839
Eco32I GATATC 1 cut(s) 290
Eco47I GGWCC 1 cut(s) 316
Eco53kI GAGCTC 2 cut(s) 547, 837
Eco57I CTGAAG 1 cut(s) 314
Eco88I CYCGRG 2 cut(s) 283, 519
EcoICRI GAGCTC 2 cut(s) 547, 837
EcoNI CCTNNNNNAGG 1 cut(s) 32
EcoRII CCWGG 2 cut(s) 318, 703
EcoRV GATATC 1 cut(s) 290
EcoT14I CCWWGG 1 cut(s) 670
EcoT38I GRGCYC 2 cut(s) 549, 839
ErhI CCWWGG 1 cut(s) 670
Esp3I CGTCTC 1 cut(s) 208
FaeI CATG 4 cut(s) 476, 484, 538, 974
FaqI GGGAC 1 cut(s) 167
FatI CATG 4 cut(s) 472, 480, 534, 970
Fnu4HI GCNGC 4 cut(s) 48, 51, 54, 503
FokI GGATG 2 cut(s) 187, 990
FriOI GRGCYC 2 cut(s) 549, 839
Fsp4HI GCNGC 4 cut(s) 48, 51, 54, 503
FspBI CTAG 5 cut(s) 92, 339, 360, 671, 867
GluI GCNGC 4 cut(s) 48, 51, 54, 503
GsaI CCCAGC 2 cut(s) 813, 849
GsuI CTGGAG 1 cut(s) 291
HaeIII GGCC 2 cut(s) 565, 861
HapII CCGG 1 cut(s) 299
HgaI GACGC 1 cut(s) 494
Hin1I GRCGYC 1 cut(s) 505
Hin1II CATG 4 cut(s) 476, 484, 538, 974
HinfI GANTC 6 cut(s) 59, 302, 469, 708, 823, 904
HpaII CCGG 1 cut(s) 299
HphI GGTGA 1 cut(s) 334
Hpy166II GTNNAC 3 cut(s) 40, 628, 801
Hpy188I TCNGA 5 cut(s) 105, 204, 294, 841, 913
Hpy188III TCNNGA 7 cut(s) 213, 285, 308, 461, 481, 770, 966
Hpy8I GTNNAC 3 cut(s) 40, 628, 801
HpyAV CCTTC 2 cut(s) 645, 727
HpyCH4III ACNGT 1 cut(s) 489
HpyCH4V TGCA 2 cut(s) 596, 689
HpyF10VI GCNNNNNNNGC 2 cut(s) 53, 867
HpyF3I CTNAG 4 cut(s) 23, 33, 123, 759
Hsp92I GRCGYC 1 cut(s) 505
Hsp92II CATG 4 cut(s) 476, 484, 538, 974
Kzo9I GATC 4 cut(s) 341, 600, 766, 841
LguI GCTCTTC 1 cut(s) 79
LmnI GCTCC 3 cut(s) 193, 834, 854
Lsp1109I GCAGC 2 cut(s) 34, 65
LweI GCATC 2 cut(s) 315, 796
MaeI CTAG 5 cut(s) 92, 339, 360, 671, 867
MaeIII GTNAC 4 cut(s) 355, 489, 523, 922
MalI GATC 4 cut(s) 343, 602, 768, 843
MboI GATC 4 cut(s) 341, 600, 766, 841
MboII GAAGA 4 cut(s) 66, 323, 323, 890
MhlI GDGCHC 2 cut(s) 549, 839
MluCI AATT 4 cut(s) 4, 107, 588, 683
MlyI GAGTC 2 cut(s) 478, 898
MmeI TCCRAC 2 cut(s) 864, 927
MnlI CCTC 6 cut(s) 38, 213, 307, 339, 457, 771
MroXI GAANNNNTTC 1 cut(s) 891
MspA1I CMGCKG 1 cut(s) 502
MspI CCGG 1 cut(s) 299
MspR9I CCNGG 2 cut(s) 320, 705
MvaI CCWGG 2 cut(s) 320, 705
MwoI GCNNNNNNNGC 2 cut(s) 53, 867
NdeII GATC 4 cut(s) 341, 600, 766, 841
NheI GCTAGC 2 cut(s) 91, 866
NlaIII CATG 4 cut(s) 476, 484, 538, 974
PaeR7I CTCGAG 1 cut(s) 519
PagI TCATGA 1 cut(s) 480
PceI AGGCCT 2 cut(s) 565, 861
PciSI GCTCTTC 1 cut(s) 79
PcsI WCGNNNNNNNCGW 1 cut(s) 502
PdmI GAANNNNTTC 1 cut(s) 891
PfeI GAWTC 4 cut(s) 59, 302, 708, 823
PflFI GACNNNGTC 1 cut(s) 907
PfoI TCCNGGA 1 cut(s) 703
PkrI GCNGC 4 cut(s) 49, 52, 55, 504
PleI GAGTC 2 cut(s) 477, 898
PpsI GAGTC 2 cut(s) 477, 898
Psp124BI GAGCTC 2 cut(s) 549, 839
Psp6I CCWGG 2 cut(s) 318, 703
PspFI CCCAGC 2 cut(s) 809, 845
PspGI CCWGG 2 cut(s) 318, 703
PspPI GGNCC 1 cut(s) 316
PspXI VCTCGAGB 1 cut(s) 519
PsyI GACNNNGTC 1 cut(s) 907
RsaI GTAC 2 cut(s) 165, 668
RsaNI GTAC 2 cut(s) 164, 667
SacI GAGCTC 2 cut(s) 549, 839
SapI GCTCTTC 1 cut(s) 79
SatI GCNGC 4 cut(s) 48, 51, 54, 503
Sau3AI GATC 4 cut(s) 341, 600, 766, 841
Sau96I GGNCC 1 cut(s) 316
SchI GAGTC 2 cut(s) 478, 898
ScrFI CCNGG 2 cut(s) 320, 705
SduI GDGCHC 2 cut(s) 549, 839
SfaNI GCATC 2 cut(s) 315, 796
SfcI CTRYAG 1 cut(s) 447
Sfr274I CTCGAG 1 cut(s) 519
SinI GGWCC 1 cut(s) 316
SlaI CTCGAG 1 cut(s) 519
SmlI CTYRAG 1 cut(s) 519
SmoI CTYRAG 1 cut(s) 519
Sse9I AATT 4 cut(s) 4, 107, 588, 683
SseBI AGGCCT 2 cut(s) 565, 861
SsiI CCGC 3 cut(s) 50, 179, 502
SspMI CTAG 5 cut(s) 92, 339, 360, 671, 867
SstI GAGCTC 2 cut(s) 549, 839
StuI AGGCCT 2 cut(s) 565, 861
StyD4I CCNGG 2 cut(s) 318, 703
StyI CCWWGG 1 cut(s) 670
TaaI ACNGT 1 cut(s) 489
TaqI TCGA 2 cut(s) 212, 520
TasI AATT 4 cut(s) 4, 107, 588, 683
TatI WGTACW 1 cut(s) 163
TauI GCSGC 2 cut(s) 53, 505
TfiI GAWTC 4 cut(s) 59, 302, 708, 823
TseI GCWGC 2 cut(s) 47, 53
TspDTI ATGAA 2 cut(s) 17, 445
TspGWI ACGGA 1 cut(s) 232
Tth111I GACNNNGTC 1 cut(s) 907
VpaK11BI GGWCC 1 cut(s) 316
XagI CCTNNNNNAGG 1 cut(s) 32
XapI RAATTY 1 cut(s) 107
XhoI CTCGAG 1 cut(s) 519
XmaJI CCTAGG 1 cut(s) 670
XmnI GAANNNNTTC 1 cut(s) 891
XspI CTAG 5 cut(s) 92, 339, 360, 671, 867
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.