Prupe.2G323900_v2.0.a1

Belongs to the phospholipid scramblase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0017071
Physical Location & Seq
Reverse (-)
29977989 .. 29982890
4902 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G323900.1

Sequence Viewer

Length: 1248 bp
ATGAATTGGACAAGGTTTTCCACCAAGGTTTACAAAGCTACTGCAGCAGATTCCAAATGCGGTTCGTCATTCTGTTATACTCGAAAACCCCATCAGAAAGCTATTCACGACACTCAAAGAGGAAGTCTACCGGCAACTTCATGGCCTCAGGATGGAGTTGGTGCTGCTACTACTGCGGCTACAGATTTTCGAGATTTTGAACAGAGGTTCATTGTTGCAAGAAATGTCATTTGGAGGTTTAAAGGAAATTCCATGTGGTCTAAACAGAGCCCGGTATCTTTGTCTCGTCAATTTGGACACAAGGCTGGTACTGGTCGTGATCCTGACTTGACTAGGGACTTCCTTGTACAGCTCTGGGTTGCAGATAGGAAAACGGAACACTCCAAAAGAAAGAGAAGAGGGAAAGCTGTTAAGTATAGAAAAGAAACACCATACCACTATTCATCCTATGGATGGTATCCGGATGCATTTTTCAATGCAGCAGACCCTTCTGGCCAACCACCTCTAAGCCAATCCATCTCGGGATTTCTGAAACCGGAATCTCCAGAAGAGGTCCAGGTGATGCCTCTTCTTGCTAGATCAAATATGCTGATTACGAGGGATATAGAGTGGGCAAATCTTGTACTTGGCTTTGAGCAGGAAAACCGGTATGGAATAGTAGATGTGTGCTACCCAGAGTCGCCTGTGGGTTTGATTCGTGAGCAGAGCCATGTTATTACTAGACAGTTGCTTCGCCTGAGGCGCCCTTTTGTTGCTTATATAACTGATGCCATGGGTAATGAGCTCTTTAGGGTTCGCAGGCCTTTTTGGTGGATAACCAGCTCAATTTATGCAGAGATCAATGGCAAGGAAGTTGGTGTGGTTCACAGACGATGGCATCTTTGGAAGAGGGTGTATGATTTGTACCTGGGGGATAAGCAGTTTGCAGTTGTTGAAAACCCTGGCTTCTGGAATTGGACTTTTACTTTGAAGGACATTGATGGTGAAGTTTTGGCTCAGATAGATCGTGACTGGAGGGGTTTTGGCTTTGAGATTTTTACTGATGCGGGGCAATATGTGATCCGTTTCGGGAGTTCTGATCCCAGCTCCAAGACCGGTGCTGCTAGCTTGATTGAAGAGTTGGAAGTCAGACGTCCACTGACTCTGTTGGAGAGAGCTGTAACTGTTGCTCTGGCTATATCGTTGGACAATGACTATTTCTCAAGACATGGTGGATGGGGATTACCTTTTGTTGAAGTAGGAGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Scramblase

Protein Analysis

416

Amino Acids

47.68

Weight (kDa)

9.31

Isoelectric Point (pI)

46.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017071)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G04940
fragaria_vesca FvH4_7g33592
malus_domestica MD01G1233700.v1.1 MD07G1305800.v1.1
prunus_persica Prupe.2G323900_v2.0.a1
pyrus_communis pycom01g24200
rosa_chinensis RchiOBHm_Chr1g0383851
rosa_laevigata RLG00000026091
rosa_samantha Rh1AG468500 Rh1BG426200 Rh1CG438900 Rh1DG459000
rosa_wichuraiana Rw1G040390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1135
AccB1I GGYRCC 1 cut(s) 741
AccI GTMKAC 1 cut(s) 127
AccIII TCCGGA 1 cut(s) 460
AciI CCGC 3 cut(s) 60, 176, 1046
AclWI GGATC 3 cut(s) 314, 1054, 1073
AcoI YGGCCR 1 cut(s) 493
AcsI RAATTY 1 cut(s) 247
AcyI GRCGYC 2 cut(s) 742, 1132
AfaI GTAC 4 cut(s) 310, 348, 624, 905
AfiI CCNNNNNNNGG 2 cut(s) 152, 453
AgeI ACCGGT 2 cut(s) 645, 1094
AgsI TTSAA 6 cut(s) 200, 475, 935, 970, 1115, 1235
AjnI CCWGG 3 cut(s) 555, 906, 940
AjuI GAANNNNNNNTTGG 2 cut(s) 214, 246
AluBI AGCT 9 cut(s) 38, 101, 352, 407, 784, 822, 1086, 1107, 1157
AluI AGCT 9 cut(s) 38, 101, 352, 407, 784, 822, 1086, 1107, 1157
Alw21I GWGCWC 1 cut(s) 786
Alw26I GTCTC 1 cut(s) 288
AlwI GGATC 3 cut(s) 314, 1054, 1073
Ama87I CYCGRG 1 cut(s) 520
Aor13HI TCCGGA 1 cut(s) 460
AoxI GGCC 3 cut(s) 143, 493, 800
ApeKI GCWGC 4 cut(s) 44, 164, 479, 1100
ApoI RAATTY 1 cut(s) 247
ArsI GACNNNNNNTTYG 6 cut(s) 109, 141, 714, 746, 949, 981
AsiGI ACCGGT 2 cut(s) 645, 1094
AspLEI GCGC 1 cut(s) 744
AspS9I GGNCC 1 cut(s) 553
AsuC2I CCSGG 1 cut(s) 272
AsuHPI GGTGA 2 cut(s) 571, 995
AsuNHI GCTAGC 1 cut(s) 1103
AvaI CYCGRG 1 cut(s) 520
AvaII GGWCC 1 cut(s) 553
AxyI CCTNAGG 2 cut(s) 147, 737
BalI TGGCCA 1 cut(s) 495
BanI GGYRCC 1 cut(s) 741
BanII GRGCYC 2 cut(s) 272, 786
Bbv12I GWGCWC 1 cut(s) 786
BbvI GCAGC 4 cut(s) 56, 151, 491, 1087
BccI CCATC 7 cut(s) 99, 146, 447, 524, 867, 974, 1209
BciT130I CCWGG 3 cut(s) 557, 908, 942
BciVI GTATCC 1 cut(s) 468
BcnI CCSGG 1 cut(s) 272
BcoDI GTCTC 1 cut(s) 288
BfaI CTAG 4 cut(s) 333, 576, 720, 1104
BfmI CTRYAG 2 cut(s) 42, 180
BfoI RGCGCY 1 cut(s) 745
BfuI GTATCC 1 cut(s) 468
BisI GCNGC 5 cut(s) 45, 165, 177, 480, 1101
BlsI GCNGC 5 cut(s) 46, 166, 178, 481, 1102
Bme1390I CCNGG 4 cut(s) 272, 557, 908, 942
Bme18I GGWCC 1 cut(s) 553
BmeT110I CYCGRG 1 cut(s) 520
BmgT120I GGNCC 1 cut(s) 553
BmiI GGNNCC 1 cut(s) 743
BmrFI CCNGG 4 cut(s) 272, 557, 908, 942
BmsI GCATC 5 cut(s) 454, 552, 757, 886, 1033
BmtI GCTAGC 1 cut(s) 1107
BpmI CTGGAG 2 cut(s) 528, 1033
BpuEI CTTGAG 1 cut(s) 1186
BpuMI CCSGG 1 cut(s) 272
BsaHI GRCGYC 2 cut(s) 742, 1132
BsaJI CCNNGG 4 cut(s) 24, 771, 907, 940
BsaWI WCCGGW 4 cut(s) 460, 535, 645, 1094
Bsc4I CCNNNNNNNGG 2 cut(s) 152, 453
Bse118I RCCGGY 3 cut(s) 130, 645, 1094
Bse1I ACTGG 2 cut(s) 316, 1016
Bse21I CCTNAGG 2 cut(s) 147, 737
BseAI TCCGGA 1 cut(s) 460
BseBI CCWGG 3 cut(s) 557, 908, 942
BseDI CCNNGG 4 cut(s) 24, 771, 907, 940
BseGI GGATG 5 cut(s) 157, 443, 458, 469, 1220
BseLI CCNNNNNNNGG 2 cut(s) 152, 453
BseMII CTCAG 3 cut(s) 161, 728, 1010
BseNI ACTGG 2 cut(s) 316, 1016
BseXI GCAGC 4 cut(s) 56, 151, 491, 1087
BseYI CCCAGC 1 cut(s) 1082
BshFI GGCC 3 cut(s) 145, 495, 802
BshNI GGYRCC 1 cut(s) 741
BshTI ACCGGT 2 cut(s) 645, 1094
BsiHKAI GWGCWC 1 cut(s) 786
BsiHKCI CYCGRG 1 cut(s) 520
BsiSI CCGG 6 cut(s) 131, 272, 461, 536, 646, 1095
BslFI GGGAC 1 cut(s) 350
BslI CCNNNNNNNGG 2 cut(s) 152, 453
BsmAI GTCTC 1 cut(s) 288
BsmFI GGGAC 1 cut(s) 350
BsnI GGCC 3 cut(s) 145, 495, 802
BsoBI CYCGRG 1 cut(s) 520
Bsp1286I GDGCHC 2 cut(s) 272, 786
Bsp13I TCCGGA 1 cut(s) 460
Bsp1407I TGTACA 1 cut(s) 346
Bsp143I GATC 6 cut(s) 319, 578, 837, 1003, 1059, 1078
Bsp19I CCATGG 1 cut(s) 771
BspACI CCGC 3 cut(s) 60, 176, 1046
BspANI GGCC 3 cut(s) 145, 495, 802
BspCNI CTCAG 3 cut(s) 160, 729, 1009
BspEI TCCGGA 1 cut(s) 460
BspLI GGNNCC 1 cut(s) 743
BspMAI CTGCAG 1 cut(s) 46
BspOI GCTAGC 1 cut(s) 1107
BspPI GGATC 3 cut(s) 314, 1054, 1073
BspT107I GGYRCC 1 cut(s) 741
BsrFI RCCGGY 3 cut(s) 130, 645, 1094
BsrGI TGTACA 1 cut(s) 346
BsrI ACTGG 2 cut(s) 316, 1016
BssAI RCCGGY 3 cut(s) 130, 645, 1094
BssECI CCNNGG 4 cut(s) 24, 771, 907, 940
BssMI GATC 6 cut(s) 319, 578, 837, 1003, 1059, 1078
BssNI GRCGYC 2 cut(s) 742, 1132
BssT1I CCWWGG 2 cut(s) 24, 771
Bst2UI CCWGG 3 cut(s) 557, 908, 942
Bst4CI ACNGT 2 cut(s) 726, 1165
Bst6I CTCTTC 5 cut(s) 391, 543, 573, 881, 1110
BstACI GRCGYC 2 cut(s) 742, 1132
BstAUI TGTACA 1 cut(s) 346
BstC8I GCNNGC 2 cut(s) 800, 1105
BstDEI CTNAG 4 cut(s) 147, 506, 737, 996
BstDSI CCRYGG 1 cut(s) 771
BstF5I GGATG 5 cut(s) 157, 443, 458, 469, 1220
BstH2I RGCGCY 1 cut(s) 745
BstHHI GCGC 1 cut(s) 744
BstKTI GATC 6 cut(s) 322, 581, 840, 1006, 1062, 1081
BstMAI GTCTC 1 cut(s) 288
BstMBI GATC 6 cut(s) 319, 578, 837, 1003, 1059, 1078
BstMWI GCNNNNNNNGC 3 cut(s) 44, 173, 741
BstNI CCWGG 3 cut(s) 557, 908, 942
BstSCI CCNGG 4 cut(s) 270, 555, 906, 940
BstSFI CTRYAG 2 cut(s) 42, 180
BstV1I GCAGC 4 cut(s) 56, 151, 491, 1087
Bsu36I CCTNAGG 2 cut(s) 147, 737
BsuI GTATCC 1 cut(s) 468
BsuRI GGCC 3 cut(s) 145, 495, 802
BtgI CCRYGG 1 cut(s) 771
BtsCI GGATG 5 cut(s) 157, 443, 458, 469, 1220
BtsIMutI CAGTG 1 cut(s) 1136
Cac8I GCNNGC 2 cut(s) 800, 1105
CfoI GCGC 1 cut(s) 744
Cfr10I RCCGGY 3 cut(s) 130, 645, 1094
Cfr13I GGNCC 1 cut(s) 553
Csp6I GTAC 4 cut(s) 309, 347, 623, 904
CspAI ACCGGT 2 cut(s) 645, 1094
CviAII CATG 5 cut(s) 141, 253, 710, 772, 1208
CviQI GTAC 4 cut(s) 309, 347, 623, 904
DdeI CTNAG 4 cut(s) 147, 506, 737, 996
DinI GGCGCC 1 cut(s) 743
DpnI GATC 6 cut(s) 321, 580, 839, 1005, 1061, 1080
DpnII GATC 6 cut(s) 319, 578, 837, 1003, 1059, 1078
DraI TTTAAA 1 cut(s) 241
EaeI YGGCCR 1 cut(s) 493
Eam1104I CTCTTC 5 cut(s) 391, 543, 573, 881, 1110
EarI CTCTTC 5 cut(s) 391, 543, 573, 881, 1110
Ecl136II GAGCTC 1 cut(s) 784
Eco130I CCWWGG 2 cut(s) 24, 771
Eco147I AGGCCT 1 cut(s) 802
Eco24I GRGCYC 2 cut(s) 272, 786
Eco47I GGWCC 1 cut(s) 553
Eco53kI GAGCTC 1 cut(s) 784
Eco81I CCTNAGG 2 cut(s) 147, 737
Eco88I CYCGRG 1 cut(s) 520
EcoICRI GAGCTC 1 cut(s) 784
EcoRII CCWGG 3 cut(s) 555, 906, 940
EcoT14I CCWWGG 2 cut(s) 24, 771
EcoT22I ATGCAT 1 cut(s) 469
EcoT38I GRGCYC 2 cut(s) 272, 786
EgeI GGCGCC 1 cut(s) 743
EheI GGCGCC 1 cut(s) 743
ErhI CCWWGG 2 cut(s) 24, 771
FaeI CATG 5 cut(s) 144, 256, 713, 775, 1211
FaqI GGGAC 1 cut(s) 350
FatI CATG 5 cut(s) 140, 252, 709, 771, 1207
FauI CCCGC 1 cut(s) 1039
FblI GTMKAC 1 cut(s) 127
Fnu4HI GCNGC 5 cut(s) 45, 165, 177, 480, 1101
FokI GGATG 5 cut(s) 164, 430, 465, 476, 1227
FriOI GRGCYC 2 cut(s) 272, 786
Fsp4HI GCNGC 5 cut(s) 45, 165, 177, 480, 1101
FspBI CTAG 4 cut(s) 333, 576, 720, 1104
GlaI GCGC 1 cut(s) 743
GluI GCNGC 5 cut(s) 45, 165, 177, 480, 1101
GsaI CCCAGC 1 cut(s) 1086
GsuI CTGGAG 2 cut(s) 528, 1033
HaeII RGCGCY 1 cut(s) 745
HaeIII GGCC 3 cut(s) 145, 495, 802
HapII CCGG 6 cut(s) 131, 272, 461, 536, 646, 1095
HhaI GCGC 1 cut(s) 744
Hin1I GRCGYC 2 cut(s) 742, 1132
Hin1II CATG 5 cut(s) 144, 256, 713, 775, 1211
Hin6I GCGC 1 cut(s) 742
HinP1I GCGC 1 cut(s) 742
HinfI GANTC 5 cut(s) 50, 539, 677, 694, 1141
HpaII CCGG 6 cut(s) 131, 272, 461, 536, 646, 1095
HphI GGTGA 2 cut(s) 571, 995
Hpy166II GTNNAC 4 cut(s) 31, 128, 865, 1136
Hpy188I TCNGA 5 cut(s) 96, 531, 999, 1078, 1130
Hpy8I GTNNAC 4 cut(s) 31, 128, 865, 1136
HpyAV CCTTC 2 cut(s) 498, 964
HpyCH4III ACNGT 2 cut(s) 726, 1165
HpyCH4IV ACGT 1 cut(s) 1132
HpyCH4V TGCA 7 cut(s) 44, 218, 362, 467, 479, 833, 926
HpyF10VI GCNNNNNNNGC 3 cut(s) 44, 173, 741
HpyF3I CTNAG 4 cut(s) 147, 506, 737, 996
HpySE526I ACGT 1 cut(s) 1132
Hsp92I GRCGYC 2 cut(s) 742, 1132
Hsp92II CATG 5 cut(s) 144, 256, 713, 775, 1211
HspAI GCGC 1 cut(s) 742
KasI GGCGCC 1 cut(s) 741
Kpn2I TCCGGA 1 cut(s) 460
Kzo9I GATC 6 cut(s) 319, 578, 837, 1003, 1059, 1078
LmnI GCTCC 1 cut(s) 1091
Lsp1109I GCAGC 4 cut(s) 56, 151, 491, 1087
LweI GCATC 5 cut(s) 454, 552, 757, 886, 1033
MaeI CTAG 4 cut(s) 333, 576, 720, 1104
MaeII ACGT 1 cut(s) 1132
MaeIII GTNAC 2 cut(s) 1007, 1159
MalI GATC 6 cut(s) 321, 580, 839, 1005, 1061, 1080
MboI GATC 6 cut(s) 319, 578, 837, 1003, 1059, 1078
MboII GAAGA 5 cut(s) 408, 560, 560, 898, 1127
MhlI GDGCHC 2 cut(s) 272, 786
MlsI TGGCCA 1 cut(s) 495
MluCI AATT 5 cut(s) 4, 247, 290, 825, 952
MluNI TGGCCA 1 cut(s) 495
Mly113I GGCGCC 1 cut(s) 742
MlyI GAGTC 2 cut(s) 686, 1135
MmeI TCCRAC 3 cut(s) 1101, 1128, 1164
Mox20I TGGCCA 1 cut(s) 495
Mph1103I ATGCAT 1 cut(s) 469
MroI TCCGGA 1 cut(s) 460
MscI TGGCCA 1 cut(s) 495
MseI TTAA 2 cut(s) 240, 411
Msp20I TGGCCA 1 cut(s) 495
MspI CCGG 6 cut(s) 131, 272, 461, 536, 646, 1095
MspR9I CCNGG 4 cut(s) 272, 557, 908, 942
MvaI CCWGG 3 cut(s) 557, 908, 942
MwoI GCNNNNNNNGC 3 cut(s) 44, 173, 741
NarI GGCGCC 1 cut(s) 742
NciI CCSGG 1 cut(s) 272
NcoI CCATGG 1 cut(s) 771
NdeII GATC 6 cut(s) 319, 578, 837, 1003, 1059, 1078
NheI GCTAGC 1 cut(s) 1103
NlaIII CATG 5 cut(s) 144, 256, 713, 775, 1211
NlaIV GGNNCC 1 cut(s) 743
NmuCI GTSAC 1 cut(s) 1007
NsiI ATGCAT 1 cut(s) 469
PceI AGGCCT 1 cut(s) 802
PfeI GAWTC 3 cut(s) 50, 539, 694
PinAI ACCGGT 2 cut(s) 645, 1094
PkrI GCNGC 5 cut(s) 46, 166, 178, 481, 1102
PleI GAGTC 2 cut(s) 685, 1135
PluTI GGCGCC 1 cut(s) 745
PpsI GAGTC 2 cut(s) 685, 1135
Psp124BI GAGCTC 1 cut(s) 786
Psp6I CCWGG 3 cut(s) 555, 906, 940
PspFI CCCAGC 1 cut(s) 1082
PspGI CCWGG 3 cut(s) 555, 906, 940
PspN4I GGNNCC 1 cut(s) 743
PspPI GGNCC 1 cut(s) 553
PstI CTGCAG 1 cut(s) 46
RsaI GTAC 4 cut(s) 310, 348, 624, 905
RsaNI GTAC 4 cut(s) 309, 347, 623, 904
SacI GAGCTC 1 cut(s) 786
SaqAI TTAA 2 cut(s) 240, 411
SatI GCNGC 5 cut(s) 45, 165, 177, 480, 1101
Sau3AI GATC 6 cut(s) 319, 578, 837, 1003, 1059, 1078
Sau96I GGNCC 1 cut(s) 553
SchI GAGTC 2 cut(s) 686, 1135
ScrFI CCNGG 4 cut(s) 272, 557, 908, 942
SduI GDGCHC 2 cut(s) 272, 786
SfaNI GCATC 5 cut(s) 454, 552, 757, 886, 1033
SfcI CTRYAG 2 cut(s) 42, 180
SfoI GGCGCC 1 cut(s) 743
SinI GGWCC 1 cut(s) 553
SmlI CTYRAG 1 cut(s) 1201
SmoI CTYRAG 1 cut(s) 1201
Sse9I AATT 5 cut(s) 4, 247, 290, 825, 952
SseBI AGGCCT 1 cut(s) 802
SsiI CCGC 3 cut(s) 60, 176, 1046
SspDI GGCGCC 1 cut(s) 741
SspMI CTAG 4 cut(s) 333, 576, 720, 1104
SstI GAGCTC 1 cut(s) 786
StuI AGGCCT 1 cut(s) 802
StyD4I CCNGG 4 cut(s) 270, 555, 906, 940
StyI CCWWGG 2 cut(s) 24, 771
TaaI ACNGT 2 cut(s) 726, 1165
TaiI ACGT 1 cut(s) 1135
TaqI TCGA 2 cut(s) 82, 190
TasI AATT 5 cut(s) 4, 247, 290, 825, 952
TatI WGTACW 2 cut(s) 346, 622
TauI GCSGC 1 cut(s) 179
TfiI GAWTC 3 cut(s) 50, 539, 694
Tru1I TTAA 2 cut(s) 240, 411
Tru9I TTAA 2 cut(s) 240, 411
TscAI CASTG 1 cut(s) 1143
TseFI GTSAC 1 cut(s) 1007
TseI GCWGC 4 cut(s) 44, 164, 479, 1100
Tsp45I GTSAC 1 cut(s) 1007
TspDTI ATGAA 4 cut(s) 17, 129, 199, 432
TspGWI ACGGA 2 cut(s) 389, 1052
TspRI CASTG 1 cut(s) 1143
VpaK11BI GGWCC 1 cut(s) 553
XapI RAATTY 1 cut(s) 247
XmiI GTMKAC 1 cut(s) 127
XspI CTAG 4 cut(s) 333, 576, 720, 1104
ZraI GACGTC 1 cut(s) 1133
Zsp2I ATGCAT 1 cut(s) 469
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.