RchiOBHm_Chr1g0383851

Belongs to the phospholipid scramblase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0017071
Physical Location & Seq
Reverse (-)
67995977 .. 67999609
3633 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ60673

Sequence Viewer

Length: 837 bp
ATGGCGGATAAGGAAATGGAGCAGTTTCGGAGAAAATCGAGACGGAGGGCTGTTGAGCAGGATGAGAATAGCGTGGTTGGGAAGCAACCACCTGTGAGCCAATCCATCTCGGGATATCTGAAGCCGGAATCTCCAGAAGAGGTCCAGGTGATGCCTCTTCTTGCTAGATCAAATATGCTCGTTACTAGGGATATAGAGTGGGCAAATCTTGTGCTTGGGTTTGAGCAGGAAAATCGGTATGCCATAGTAGATGTATGCTATCCACAGTCGCCTGTAGGTTTCATTCGTGAGGAGAGTCATGTTATCATGAGACAGTTACTTCGCCAGCGGCGTCCTTTTGTTGCTCGAGTAACTGATGGCATGGGAAATGAGCTCTTTAGGGTTCGCAGGCCTTTTTGGTGGATAAACAGCTCAATTTATGCAGAGATCAATGGTAAGGAAGTTGGTGTGGTTCACAGACGATGGCATTTGTGGAGAAGGATTTATGATTTGTACCTAGGGAATAAACAATTTGCAGTTGTTGAAAATCCTGGATTCTGGCATTGGACATTTACTTTGAAGGACATTGATGGGGGTGTGTTGGCCGAGATAGATCGTGATTGGAGGGGTTTTGGCTTTGAGCTGTTTACTGATGCTGGGCAATATGTGATTCGGTTTGGGAGCTCTGATCCCAGCTCCAAGATAGGCCTTGCTAGCCAGATTGAGGAGTTGGAAGTAGTTCGCCCATTGACTCTGTCAGAGAGAGCTGTAACTCTTGCTCTTGCTATATCGTTGGATAACGACTATTTTTCAAGACATGGTGGATGGGGAATACCTTATTTTGATGTAGGTGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Scramblase

Protein Analysis

278

Amino Acids

32.26

Weight (kDa)

6.04

Isoelectric Point (pI)

64.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Scramblase PF03803 42 - 265 2e-63 Scramblase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017071)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G04940
fragaria_vesca FvH4_7g33592
malus_domestica MD01G1233700.v1.1 MD07G1305800.v1.1
prunus_persica Prupe.2G323900_v2.0.a1
pyrus_communis pycom01g24200
rosa_chinensis RchiOBHm_Chr1g0383851
rosa_laevigata RLG00000026091
rosa_samantha Rh1AG468500 Rh1BG426200 Rh1CG438900 Rh1DG459000
rosa_wichuraiana Rw1G040390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 5, 328
AclWI GGATC 1 cut(s) 662
AcoI YGGCCR 1 cut(s) 582
AcuI CTGAAG 1 cut(s) 140
AcyI GRCGYC 1 cut(s) 331
AfaI GTAC 1 cut(s) 494
AfiI CCNNNNNNNGG 1 cut(s) 703
AgsI TTSAA 3 cut(s) 524, 559, 792
AjnI CCWGG 2 cut(s) 144, 529
AluBI AGCT 6 cut(s) 373, 411, 622, 663, 675, 746
AluI AGCT 6 cut(s) 373, 411, 622, 663, 675, 746
Alw21I GWGCWC 2 cut(s) 375, 665
Alw26I GTCTC 2 cut(s) 34, 304
AlwI GGATC 1 cut(s) 662
Ama87I CYCGRG 2 cut(s) 109, 345
AoxI GGCC 3 cut(s) 389, 582, 685
ArsI GACNNNNNNTTYG 4 cut(s) 303, 335, 538, 570
Asp700I GAANNNNTTC 1 cut(s) 717
AspA2I CCTAGG 1 cut(s) 496
AspS9I GGNCC 1 cut(s) 142
AsuHPI GGTGA 1 cut(s) 160
AsuNHI GCTAGC 1 cut(s) 692
AvaI CYCGRG 2 cut(s) 109, 345
AvaII GGWCC 1 cut(s) 142
AvrII CCTAGG 1 cut(s) 496
BanII GRGCYC 2 cut(s) 375, 665
Bbv12I GWGCWC 2 cut(s) 375, 665
BccI CCATC 5 cut(s) 113, 350, 456, 563, 798
BcgI CGANNNNNNTGC 2 cut(s) 215, 249
BciT130I CCWGG 2 cut(s) 146, 531
BcoDI GTCTC 2 cut(s) 34, 304
BfaI CTAG 4 cut(s) 165, 186, 497, 693
BfmI CTRYAG 1 cut(s) 273
BisI GCNGC 1 cut(s) 329
BlnI CCTAGG 1 cut(s) 496
BlsI GCNGC 1 cut(s) 330
Bme1390I CCNGG 2 cut(s) 146, 531
Bme18I GGWCC 1 cut(s) 142
BmeT110I CYCGRG 2 cut(s) 109, 345
BmgT120I GGNCC 1 cut(s) 142
BmrFI CCNGG 2 cut(s) 146, 531
BmsI GCATC 2 cut(s) 141, 622
BmtI GCTAGC 1 cut(s) 696
BpmI CTGGAG 1 cut(s) 117
BsaHI GRCGYC 1 cut(s) 331
BsaJI CCNNGG 1 cut(s) 496
Bsc4I CCNNNNNNNGG 1 cut(s) 703
BseBI CCWGG 2 cut(s) 146, 531
BseDI CCNNGG 1 cut(s) 496
BseGI GGATG 2 cut(s) 67, 809
BseLI CCNNNNNNNGG 1 cut(s) 703
BseRI GAGGAG 2 cut(s) 305, 719
BseYI CCCAGC 2 cut(s) 635, 671
BshFI GGCC 3 cut(s) 391, 584, 687
BsiHKAI GWGCWC 2 cut(s) 375, 665
BsiHKCI CYCGRG 2 cut(s) 109, 345
BsiSI CCGG 1 cut(s) 125
BslI CCNNNNNNNGG 1 cut(s) 703
BsmAI GTCTC 2 cut(s) 34, 304
BsmBI CGTCTC 1 cut(s) 34
BsnI GGCC 3 cut(s) 391, 584, 687
BsoBI CYCGRG 2 cut(s) 109, 345
Bsp1286I GDGCHC 2 cut(s) 375, 665
Bsp143I GATC 4 cut(s) 167, 426, 592, 667
BspACI CCGC 2 cut(s) 5, 328
BspANI GGCC 3 cut(s) 391, 584, 687
BspHI TCATGA 1 cut(s) 306
BspOI GCTAGC 1 cut(s) 696
BspPI GGATC 1 cut(s) 662
BssECI CCNNGG 1 cut(s) 496
BssMI GATC 4 cut(s) 167, 426, 592, 667
BssNI GRCGYC 1 cut(s) 331
BssT1I CCWWGG 1 cut(s) 496
Bst2UI CCWGG 2 cut(s) 146, 531
Bst4CI ACNGT 2 cut(s) 267, 315
Bst6I CTCTTC 2 cut(s) 132, 162
BstACI GRCGYC 1 cut(s) 331
BstC8I GCNNGC 3 cut(s) 326, 389, 694
BstF5I GGATG 2 cut(s) 67, 809
BstKTI GATC 4 cut(s) 170, 429, 595, 670
BstMAI GTCTC 2 cut(s) 34, 304
BstMBI GATC 4 cut(s) 167, 426, 592, 667
BstMWI GCNNNNNNNGC 1 cut(s) 693
BstNI CCWGG 2 cut(s) 146, 531
BstSCI CCNGG 2 cut(s) 144, 529
BstSFI CTRYAG 1 cut(s) 273
BsuRI GGCC 3 cut(s) 391, 584, 687
BtsCI GGATG 2 cut(s) 67, 809
Cac8I GCNNGC 3 cut(s) 326, 389, 694
CciI TCATGA 1 cut(s) 306
Cfr13I GGNCC 1 cut(s) 142
CseI GACGC 1 cut(s) 320
Csp6I GTAC 1 cut(s) 493
CviAII CATG 4 cut(s) 299, 307, 361, 797
CviQI GTAC 1 cut(s) 493
DpnI GATC 4 cut(s) 169, 428, 594, 669
DpnII GATC 4 cut(s) 167, 426, 592, 667
EaeI YGGCCR 1 cut(s) 582
Eam1104I CTCTTC 2 cut(s) 132, 162
EarI CTCTTC 2 cut(s) 132, 162
EciI GGCGGA 1 cut(s) 20
Ecl136II GAGCTC 2 cut(s) 373, 663
Eco130I CCWWGG 1 cut(s) 496
Eco147I AGGCCT 2 cut(s) 391, 687
Eco24I GRGCYC 2 cut(s) 375, 665
Eco32I GATATC 1 cut(s) 116
Eco47I GGWCC 1 cut(s) 142
Eco53kI GAGCTC 2 cut(s) 373, 663
Eco57I CTGAAG 1 cut(s) 140
Eco88I CYCGRG 2 cut(s) 109, 345
EcoICRI GAGCTC 2 cut(s) 373, 663
EcoRII CCWGG 2 cut(s) 144, 529
EcoRV GATATC 1 cut(s) 116
EcoT14I CCWWGG 1 cut(s) 496
EcoT38I GRGCYC 2 cut(s) 375, 665
ErhI CCWWGG 1 cut(s) 496
Esp3I CGTCTC 1 cut(s) 34
FaeI CATG 4 cut(s) 302, 310, 364, 800
FatI CATG 4 cut(s) 298, 306, 360, 796
Fnu4HI GCNGC 1 cut(s) 329
FokI GGATG 2 cut(s) 74, 816
FriOI GRGCYC 2 cut(s) 375, 665
Fsp4HI GCNGC 1 cut(s) 329
FspBI CTAG 4 cut(s) 165, 186, 497, 693
GluI GCNGC 1 cut(s) 329
GsaI CCCAGC 2 cut(s) 639, 675
GsuI CTGGAG 1 cut(s) 117
HaeIII GGCC 3 cut(s) 391, 584, 687
HapII CCGG 1 cut(s) 125
HgaI GACGC 1 cut(s) 320
Hin1I GRCGYC 1 cut(s) 331
Hin1II CATG 4 cut(s) 302, 310, 364, 800
HinfI GANTC 5 cut(s) 128, 295, 534, 649, 730
HpaII CCGG 1 cut(s) 125
HphI GGTGA 1 cut(s) 160
Hpy166II GTNNAC 2 cut(s) 454, 627
Hpy188I TCNGA 4 cut(s) 30, 120, 667, 739
Hpy188III TCNNGA 7 cut(s) 39, 111, 134, 287, 307, 596, 792
Hpy8I GTNNAC 2 cut(s) 454, 627
HpyAV CCTTC 2 cut(s) 471, 553
HpyCH4III ACNGT 2 cut(s) 267, 315
HpyCH4V TGCA 2 cut(s) 422, 515
HpyF10VI GCNNNNNNNGC 1 cut(s) 693
Hsp92I GRCGYC 1 cut(s) 331
Hsp92II CATG 4 cut(s) 302, 310, 364, 800
Kzo9I GATC 4 cut(s) 167, 426, 592, 667
LmnI GCTCC 3 cut(s) 19, 660, 680
LweI GCATC 2 cut(s) 141, 622
MaeI CTAG 4 cut(s) 165, 186, 497, 693
MaeIII GTNAC 4 cut(s) 181, 315, 349, 748
MalI GATC 4 cut(s) 169, 428, 594, 669
MboI GATC 4 cut(s) 167, 426, 592, 667
MboII GAAGA 2 cut(s) 149, 149
MhlI GDGCHC 2 cut(s) 375, 665
MluCI AATT 2 cut(s) 414, 509
MlyI GAGTC 2 cut(s) 304, 724
MmeI TCCRAC 2 cut(s) 690, 753
MnlI CCTC 6 cut(s) 39, 133, 165, 283, 597, 697
MroXI GAANNNNTTC 1 cut(s) 717
MspA1I CMGCKG 1 cut(s) 328
MspI CCGG 1 cut(s) 125
MspR9I CCNGG 2 cut(s) 146, 531
MvaI CCWGG 2 cut(s) 146, 531
MwoI GCNNNNNNNGC 1 cut(s) 693
NdeII GATC 4 cut(s) 167, 426, 592, 667
NheI GCTAGC 1 cut(s) 692
NlaIII CATG 4 cut(s) 302, 310, 364, 800
NmeAIII GCCGAG 1 cut(s) 610
PaeR7I CTCGAG 1 cut(s) 345
PagI TCATGA 1 cut(s) 306
PceI AGGCCT 2 cut(s) 391, 687
PcsI WCGNNNNNNNCGW 1 cut(s) 328
PdmI GAANNNNTTC 1 cut(s) 717
PfeI GAWTC 3 cut(s) 128, 534, 649
PflFI GACNNNGTC 1 cut(s) 733
PfoI TCCNGGA 1 cut(s) 529
PkrI GCNGC 1 cut(s) 330
PleI GAGTC 2 cut(s) 303, 724
PpsI GAGTC 2 cut(s) 303, 724
Psp124BI GAGCTC 2 cut(s) 375, 665
Psp6I CCWGG 2 cut(s) 144, 529
PspFI CCCAGC 2 cut(s) 635, 671
PspGI CCWGG 2 cut(s) 144, 529
PspPI GGNCC 1 cut(s) 142
PspXI VCTCGAGB 1 cut(s) 345
PsyI GACNNNGTC 1 cut(s) 733
RsaI GTAC 1 cut(s) 494
RsaNI GTAC 1 cut(s) 493
SacI GAGCTC 2 cut(s) 375, 665
SatI GCNGC 1 cut(s) 329
Sau3AI GATC 4 cut(s) 167, 426, 592, 667
Sau96I GGNCC 1 cut(s) 142
SchI GAGTC 2 cut(s) 304, 724
ScrFI CCNGG 2 cut(s) 146, 531
SduI GDGCHC 2 cut(s) 375, 665
SfaNI GCATC 2 cut(s) 141, 622
SfcI CTRYAG 1 cut(s) 273
Sfr274I CTCGAG 1 cut(s) 345
SinI GGWCC 1 cut(s) 142
SlaI CTCGAG 1 cut(s) 345
SmlI CTYRAG 1 cut(s) 345
SmoI CTYRAG 1 cut(s) 345
Sse9I AATT 2 cut(s) 414, 509
SseBI AGGCCT 2 cut(s) 391, 687
SsiI CCGC 2 cut(s) 5, 328
SspMI CTAG 4 cut(s) 165, 186, 497, 693
SstI GAGCTC 2 cut(s) 375, 665
StuI AGGCCT 2 cut(s) 391, 687
StyD4I CCNGG 2 cut(s) 144, 529
StyI CCWWGG 1 cut(s) 496
TaaI ACNGT 2 cut(s) 267, 315
TaqI TCGA 2 cut(s) 38, 346
TasI AATT 2 cut(s) 414, 509
TauI GCSGC 1 cut(s) 331
TfiI GAWTC 3 cut(s) 128, 534, 649
TspDTI ATGAA 1 cut(s) 271
TspGWI ACGGA 1 cut(s) 58
Tth111I GACNNNGTC 1 cut(s) 733
VpaK11BI GGWCC 1 cut(s) 142
XhoI CTCGAG 1 cut(s) 345
XmaJI CCTAGG 1 cut(s) 496
XmnI GAANNNNTTC 1 cut(s) 717
XspI CTAG 4 cut(s) 165, 186, 497, 693
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.