FvH4_7g33592

Belongs to the phospholipid scramblase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0017071
Physical Location & Seq
Reverse (-)
23863820 .. 23864855
1036 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g33592.t1

Sequence Viewer

Length: 402 bp
ATGTTATCTGAAGTTGGTGTGGTTCACAGACGATGGCATTTGTGGAGAAGGATATATGATTTGTACCTAGGGAATAAACAATTTGCTGTTGTTGAAAACCCTGGATTTTGGCACTGGACATTTACTTTGAAGGACATTGATGGGGGTGTTTTGGCTGAGATAGATCGTGATTGGAGGGGGTTTGGCTTTGAGCTCTTTACTGATGCTGGGCAATATGTTATTCGGTTTGGGAACTCTGATCCCGCCTCTAAGATTGGCCTTGCTAGCCAGATTCAAGAGTTGGAAGTAGTTCGCCCACTGACTCTGTCAGAGAGAGCTGTGACTCTTGCTCTTGCTATATCGTTGGATAATGACTATTTCCCAAAACATGGTGGATGGTTGTTCATAAGAAACAATGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Scramblase

Protein Analysis

134

Amino Acids

15.32

Weight (kDa)

6.05

Isoelectric Point (pI)

41.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Scramblase PF03803 4 - 120 7.4e-30 Scramblase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017071)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G04940
fragaria_vesca FvH4_7g33592
malus_domestica MD01G1233700.v1.1 MD07G1305800.v1.1
prunus_persica Prupe.2G323900_v2.0.a1
pyrus_communis pycom01g24200
rosa_chinensis RchiOBHm_Chr1g0383851
rosa_laevigata RLG00000026091
rosa_samantha Rh1AG468500 Rh1BG426200 Rh1CG438900 Rh1DG459000
rosa_wichuraiana Rw1G040390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 368
AciI CCGC 1 cut(s) 243
AclWI GGATC 1 cut(s) 233
AcuI CTGAAG 1 cut(s) 30
AfaI GTAC 1 cut(s) 65
AfiI CCNNNNNNNGG 1 cut(s) 368
AgsI TTSAA 3 cut(s) 95, 130, 275
AjnI CCWGG 1 cut(s) 100
AluBI AGCT 2 cut(s) 193, 317
AluI AGCT 2 cut(s) 193, 317
Alw21I GWGCWC 1 cut(s) 195
AlwI GGATC 1 cut(s) 233
AoxI GGCC 1 cut(s) 256
ArsI GACNNNNNNTTYG 2 cut(s) 109, 141
Asp700I GAANNNNTTC 1 cut(s) 288
AspA2I CCTAGG 1 cut(s) 67
AsuNHI GCTAGC 1 cut(s) 263
AvrII CCTAGG 1 cut(s) 67
BanII GRGCYC 1 cut(s) 195
Bbv12I GWGCWC 1 cut(s) 195
BccI CCATC 3 cut(s) 27, 134, 369
BciT130I CCWGG 1 cut(s) 102
BfaI CTAG 3 cut(s) 68, 264, 400
BlnI CCTAGG 1 cut(s) 67
Bme1390I CCNGG 1 cut(s) 102
BmrFI CCNGG 1 cut(s) 102
BmsI GCATC 1 cut(s) 193
BmtI GCTAGC 1 cut(s) 267
BsaJI CCNNGG 2 cut(s) 67, 100
Bsc4I CCNNNNNNNGG 1 cut(s) 368
Bse1I ACTGG 1 cut(s) 119
BseBI CCWGG 1 cut(s) 102
BseDI CCNNGG 2 cut(s) 67, 100
BseGI GGATG 1 cut(s) 380
BseLI CCNNNNNNNGG 1 cut(s) 368
BseMII CTCAG 1 cut(s) 147
BseNI ACTGG 1 cut(s) 119
BseYI CCCAGC 1 cut(s) 206
BshFI GGCC 1 cut(s) 258
BsiHKAI GWGCWC 1 cut(s) 195
BslI CCNNNNNNNGG 1 cut(s) 368
BsnI GGCC 1 cut(s) 258
Bsp1286I GDGCHC 1 cut(s) 195
Bsp143I GATC 2 cut(s) 163, 238
BspACI CCGC 1 cut(s) 243
BspANI GGCC 1 cut(s) 258
BspCNI CTCAG 1 cut(s) 148
BspOI GCTAGC 1 cut(s) 267
BspPI GGATC 1 cut(s) 233
BsrI ACTGG 1 cut(s) 119
BssECI CCNNGG 2 cut(s) 67, 100
BssMI GATC 2 cut(s) 163, 238
BssT1I CCWWGG 1 cut(s) 67
Bst2UI CCWGG 1 cut(s) 102
BstC8I GCNNGC 1 cut(s) 265
BstDEI CTNAG 2 cut(s) 156, 249
BstF5I GGATG 1 cut(s) 380
BstKTI GATC 2 cut(s) 166, 241
BstMBI GATC 2 cut(s) 163, 238
BstMWI GCNNNNNNNGC 1 cut(s) 264
BstNI CCWGG 1 cut(s) 102
BstSCI CCNGG 1 cut(s) 100
BsuRI GGCC 1 cut(s) 258
BtsCI GGATG 1 cut(s) 380
BtsIMutI CAGTG 2 cut(s) 112, 296
Cac8I GCNNGC 1 cut(s) 265
Csp6I GTAC 1 cut(s) 64
CviAII CATG 1 cut(s) 368
CviJI RGCY 7 cut(s) 155, 186, 193, 258, 267, 317, 399
CviKI_1 RGCY 7 cut(s) 155, 186, 193, 258, 267, 317, 399
CviQI GTAC 1 cut(s) 64
DdeI CTNAG 2 cut(s) 156, 249
DpnI GATC 2 cut(s) 165, 240
DpnII GATC 2 cut(s) 163, 238
Ecl136II GAGCTC 1 cut(s) 193
Eco130I CCWWGG 1 cut(s) 67
Eco24I GRGCYC 1 cut(s) 195
Eco53kI GAGCTC 1 cut(s) 193
Eco57I CTGAAG 1 cut(s) 30
EcoICRI GAGCTC 1 cut(s) 193
EcoRII CCWGG 1 cut(s) 100
EcoT14I CCWWGG 1 cut(s) 67
EcoT38I GRGCYC 1 cut(s) 195
ErhI CCWWGG 1 cut(s) 67
FaeI CATG 1 cut(s) 371
FaiI YATR 6 cut(s) 55, 57, 216, 338, 369, 386
FatI CATG 1 cut(s) 367
FauI CCCGC 1 cut(s) 250
FokI GGATG 1 cut(s) 387
FriOI GRGCYC 1 cut(s) 195
FspBI CTAG 3 cut(s) 68, 264, 400
GsaI CCCAGC 1 cut(s) 210
HaeIII GGCC 1 cut(s) 258
Hin1II CATG 1 cut(s) 371
HinfI GANTC 3 cut(s) 271, 301, 322
Hpy166II GTNNAC 1 cut(s) 25
Hpy188I TCNGA 3 cut(s) 10, 238, 310
Hpy188III TCNNGA 2 cut(s) 167, 275
Hpy8I GTNNAC 1 cut(s) 25
HpyAV CCTTC 2 cut(s) 42, 124
HpyF10VI GCNNNNNNNGC 1 cut(s) 264
HpyF3I CTNAG 2 cut(s) 156, 249
Hsp92II CATG 1 cut(s) 371
Kzo9I GATC 2 cut(s) 163, 238
LpnPI CCDG 5 cut(s) 87, 100, 114, 192, 281
LweI GCATC 1 cut(s) 193
MaeI CTAG 3 cut(s) 68, 264, 400
MaeIII GTNAC 1 cut(s) 319
MalI GATC 2 cut(s) 165, 240
MboI GATC 2 cut(s) 163, 238
MhlI GDGCHC 1 cut(s) 195
MluCI AATT 1 cut(s) 80
MlyI GAGTC 2 cut(s) 295, 316
MmeI TCCRAC 2 cut(s) 261, 324
MnlI CCTC 2 cut(s) 168, 256
MroXI GAANNNNTTC 1 cut(s) 288
MspR9I CCNGG 1 cut(s) 102
MvaI CCWGG 1 cut(s) 102
MwoI GCNNNNNNNGC 1 cut(s) 264
NdeII GATC 2 cut(s) 163, 238
NheI GCTAGC 1 cut(s) 263
NlaIII CATG 1 cut(s) 371
NmuCI GTSAC 1 cut(s) 319
PdmI GAANNNNTTC 1 cut(s) 288
PfeI GAWTC 1 cut(s) 271
PflFI GACNNNGTC 1 cut(s) 304
PflMI CCANNNNNTGG 1 cut(s) 368
PleI GAGTC 2 cut(s) 295, 316
PpsI GAGTC 2 cut(s) 295, 316
Psp124BI GAGCTC 1 cut(s) 195
Psp6I CCWGG 1 cut(s) 100
PspFI CCCAGC 1 cut(s) 206
PspGI CCWGG 1 cut(s) 100
PsyI GACNNNGTC 1 cut(s) 304
RsaI GTAC 1 cut(s) 65
RsaNI GTAC 1 cut(s) 64
SacI GAGCTC 1 cut(s) 195
Sau3AI GATC 2 cut(s) 163, 238
SchI GAGTC 2 cut(s) 295, 316
ScrFI CCNGG 1 cut(s) 102
SduI GDGCHC 1 cut(s) 195
SetI ASST 3 cut(s) 69, 195, 319
SfaNI GCATC 1 cut(s) 193
Sse9I AATT 1 cut(s) 80
SsiI CCGC 1 cut(s) 243
SspMI CTAG 3 cut(s) 68, 264, 400
SstI GAGCTC 1 cut(s) 195
StyD4I CCNGG 1 cut(s) 100
StyI CCWWGG 1 cut(s) 67
TasI AATT 1 cut(s) 80
TfiI GAWTC 1 cut(s) 271
TscAI CASTG 2 cut(s) 119, 303
TseFI GTSAC 1 cut(s) 319
Tsp45I GTSAC 1 cut(s) 319
TspDTI ATGAA 1 cut(s) 373
TspRI CASTG 2 cut(s) 119, 303
Tth111I GACNNNGTC 1 cut(s) 304
Van91I CCANNNNNTGG 1 cut(s) 368
XmaJI CCTAGG 1 cut(s) 67
XmnI GAANNNNTTC 1 cut(s) 288
XspI CTAG 3 cut(s) 68, 264, 400
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.