AT2G05140

phosphoribosylaminoimidazole carboxylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0008753
Physical Location & Seq
Forward (+)
1853935 .. 1854903
969 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G05140.1

Sequence Viewer

Length: 489 bp
ATGGGTTCAGACACGGATCTTCTTGTTATGAAGGATGCTGCCAAAATTCTGGACATGTTTGGTGTCACACATGAGGTAAAGATAGTTTCTGCTCATCGCACCCCAGAGATGATGTATACATATGCAACCTCAGCTCATAGTCGAGGCGTTCAAGTCATCATTGCAGGTGCTGGTGGTGCTGCTCACTTACCAGGTATGGTTGCTTCACTCACTCCTTTGCCTGTGATTGGTGTCCCTGTCCAAGCTACCCGTTTGGATGGAGTTGATTCACTTCTCTCCATCGTTCAGATGCCTAGAGGTGTTCCTGTTGCGACAGTTGCAATAAACAATGCGACCAACGCAGCCTTGCTTGCAGTCCGGATGTTGGGAATCTCTGATAATGATCTTGTCTCAAGGATGAGACAGTACCAAGAAGACATGAGAGATGAGAACCTGAATAAAGGAGAGAAACTTGAGACACAAGGTTGGGAATCATATTTGAACCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko01100 ko01110 map00230 map01100 map01110
Pfam Domains
Protein Families
AIRC ATP-grasp

Protein Analysis

162

Amino Acids

17.42

Weight (kDa)

5.47

Isoelectric Point (pI)

22.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AIRC PF00731 1 - 142 6.5e-64 AIR carboxylase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 155
Acc36I ACCTGC 1 cut(s) 155
AccI GTMKAC 1 cut(s) 116
AccIII TCCGGA 1 cut(s) 357
AclWI GGATC 1 cut(s) 24
AcsI RAATTY 1 cut(s) 45
AfaI GTAC 1 cut(s) 407
AfiI CCNNNNNNNGG 2 cut(s) 227, 364
AflIII ACRYGT 1 cut(s) 54
AgsI TTSAA 2 cut(s) 152, 481
AjnI CCWGG 1 cut(s) 190
AluBI AGCT 2 cut(s) 134, 245
AluI AGCT 2 cut(s) 134, 245
Alw26I GTCTC 3 cut(s) 394, 394, 449
AlwI GGATC 1 cut(s) 24
AlwNI CAGNNNCTG 1 cut(s) 170
Aor13HI TCCGGA 1 cut(s) 357
ApeKI GCWGC 3 cut(s) 38, 179, 341
ApoI RAATTY 1 cut(s) 45
BarI GAAGNNNNNNTAC 2 cut(s) 187, 219
BbsI GAAGAC 1 cut(s) 420
BbvCI CCTCAGC 1 cut(s) 130
BbvI GCAGC 3 cut(s) 25, 166, 353
BccI CCATC 2 cut(s) 251, 287
BciT130I CCWGG 1 cut(s) 192
BcoDI GTCTC 3 cut(s) 394, 394, 449
BfaI CTAG 1 cut(s) 294
BfuAI ACCTGC 1 cut(s) 155
BisI GCNGC 3 cut(s) 39, 180, 342
BlsI GCNGC 3 cut(s) 40, 181, 343
Bme1390I CCNGG 1 cut(s) 192
BmrFI CCNGG 1 cut(s) 192
BmsI GCATC 2 cut(s) 25, 279
BpiI GAAGAC 1 cut(s) 420
Bpu10I CCTNAGC 1 cut(s) 130
BpuEI CTTGAG 2 cut(s) 376, 473
BsaBI GATNNNNATC 1 cut(s) 381
BsaWI WCCGGW 1 cut(s) 357
Bsc4I CCNNNNNNNGG 2 cut(s) 227, 364
Bse1I ACTGG 1 cut(s) 484
Bse3DI GCAATG 1 cut(s) 159
Bse8I GATNNNNATC 1 cut(s) 381
BseAI TCCGGA 1 cut(s) 357
BseBI CCWGG 1 cut(s) 192
BseGI GGATG 4 cut(s) 40, 262, 366, 402
BseJI GATNNNNATC 1 cut(s) 381
BseLI CCNNNNNNNGG 2 cut(s) 227, 364
BseMI GCAATG 1 cut(s) 159
BseMII CTCAG 1 cut(s) 144
BseNI ACTGG 1 cut(s) 484
BseXI GCAGC 3 cut(s) 25, 166, 353
BsiSI CCGG 1 cut(s) 358
BslFI GGGAC 1 cut(s) 218
BslI CCNNNNNNNGG 2 cut(s) 227, 364
BsmAI GTCTC 3 cut(s) 394, 394, 449
BsmFI GGGAC 1 cut(s) 218
Bsp13I TCCGGA 1 cut(s) 357
Bsp143I GATC 2 cut(s) 16, 382
BspCNI CTCAG 1 cut(s) 143
BspEI TCCGGA 1 cut(s) 357
BspMI ACCTGC 1 cut(s) 155
BspPI GGATC 1 cut(s) 24
BsrDI GCAATG 1 cut(s) 159
BsrI ACTGG 1 cut(s) 484
BssMI GATC 2 cut(s) 16, 382
BssNAI GTATAC 1 cut(s) 117
Bst1107I GTATAC 1 cut(s) 117
Bst2UI CCWGG 1 cut(s) 192
Bst4CI ACNGT 2 cut(s) 316, 405
BstC8I GCNNGC 1 cut(s) 351
BstDEI CTNAG 1 cut(s) 130
BstF5I GGATG 4 cut(s) 40, 262, 366, 402
BstKTI GATC 2 cut(s) 19, 385
BstMAI GTCTC 3 cut(s) 394, 394, 449
BstMBI GATC 2 cut(s) 16, 382
BstMWI GCNNNNNNNGC 5 cut(s) 131, 176, 317, 338, 350
BstNI CCWGG 1 cut(s) 192
BstNSI RCATGY 1 cut(s) 58
BstSCI CCNGG 1 cut(s) 190
BstV1I GCAGC 3 cut(s) 25, 166, 353
BstV2I GAAGAC 1 cut(s) 420
BstX2I RGATCY 1 cut(s) 16
BstXI CCANNNNNNTGG 1 cut(s) 49
BstYI RGATCY 1 cut(s) 16
BstZ17I GTATAC 1 cut(s) 117
BtgZI GCGATG 1 cut(s) 80
BtsCI GGATG 4 cut(s) 40, 262, 366, 402
BveI ACCTGC 1 cut(s) 155
Cac8I GCNNGC 1 cut(s) 351
CaiI CAGNNNCTG 1 cut(s) 170
CsiI ACCWGGT 1 cut(s) 190
Csp6I GTAC 1 cut(s) 406
CviAII CATG 3 cut(s) 55, 71, 418
CviJI RGCY 3 cut(s) 134, 245, 344
CviKI_1 RGCY 3 cut(s) 134, 245, 344
CviQI GTAC 1 cut(s) 406
DdeI CTNAG 1 cut(s) 130
DpnI GATC 2 cut(s) 18, 384
DpnII GATC 2 cut(s) 16, 382
EcoRII CCWGG 1 cut(s) 190
FaeI CATG 3 cut(s) 58, 74, 421
FaqI GGGAC 1 cut(s) 218
FatI CATG 3 cut(s) 54, 70, 417
FauNDI CATATG 1 cut(s) 121
FblI GTMKAC 1 cut(s) 116
Fnu4HI GCNGC 3 cut(s) 39, 180, 342
FokI GGATG 4 cut(s) 47, 269, 373, 409
Fsp4HI GCNGC 3 cut(s) 39, 180, 342
FspBI CTAG 1 cut(s) 294
GluI GCNGC 3 cut(s) 39, 180, 342
HapII CCGG 1 cut(s) 358
Hin1II CATG 3 cut(s) 58, 74, 421
HinfI GANTC 3 cut(s) 266, 369, 470
HpaII CCGG 1 cut(s) 358
Hpy166II GTNNAC 1 cut(s) 117
Hpy188I TCNGA 3 cut(s) 10, 288, 376
Hpy188III TCNNGA 2 cut(s) 50, 358
Hpy8I GTNNAC 1 cut(s) 117
HpyAV CCTTC 1 cut(s) 25
HpyCH4III ACNGT 2 cut(s) 316, 405
HpyCH4V TGCA 4 cut(s) 125, 164, 320, 353
HpyF10VI GCNNNNNNNGC 5 cut(s) 131, 176, 317, 338, 350
HpyF3I CTNAG 1 cut(s) 130
Hsp92II CATG 3 cut(s) 58, 74, 421
Kpn2I TCCGGA 1 cut(s) 357
Kzo9I GATC 2 cut(s) 16, 382
Lsp1109I GCAGC 3 cut(s) 25, 166, 353
LweI GCATC 2 cut(s) 25, 279
MabI ACCWGGT 1 cut(s) 190
MaeI CTAG 1 cut(s) 294
MaeIII GTNAC 1 cut(s) 64
MalI GATC 2 cut(s) 18, 384
MboI GATC 2 cut(s) 16, 382
MboII GAAGA 2 cut(s) 11, 425
MflI RGATCY 1 cut(s) 16
MluCI AATT 1 cut(s) 45
MnlI CCTC 4 cut(s) 67, 137, 139, 290
MroI TCCGGA 1 cut(s) 357
MspI CCGG 1 cut(s) 358
MspR9I CCNGG 1 cut(s) 192
MvaI CCWGG 1 cut(s) 192
MwoI GCNNNNNNNGC 5 cut(s) 131, 176, 317, 338, 350
NdeI CATATG 1 cut(s) 121
NdeII GATC 2 cut(s) 16, 382
NlaIII CATG 3 cut(s) 58, 74, 421
NmuCI GTSAC 1 cut(s) 64
NspI RCATGY 1 cut(s) 58
PaqCI CACCTGC 1 cut(s) 155
PciI ACATGT 1 cut(s) 54
PfeI GAWTC 3 cut(s) 266, 369, 470
PkrI GCNGC 3 cut(s) 40, 181, 343
PscI ACATGT 1 cut(s) 54
Psp6I CCWGG 1 cut(s) 190
PspGI CCWGG 1 cut(s) 190
PstNI CAGNNNCTG 1 cut(s) 170
PsuI RGATCY 1 cut(s) 16
RsaI GTAC 1 cut(s) 407
RsaNI GTAC 1 cut(s) 406
SatI GCNGC 3 cut(s) 39, 180, 342
Sau3AI GATC 2 cut(s) 16, 382
ScrFI CCNGG 1 cut(s) 192
SetI ASST 9 cut(s) 78, 131, 136, 169, 196, 247, 301, 435, 466
SexAI ACCWGGT 1 cut(s) 190
SfaNI GCATC 2 cut(s) 25, 279
SmlI CTYRAG 2 cut(s) 391, 452
SmoI CTYRAG 2 cut(s) 391, 452
Sse9I AATT 1 cut(s) 45
SspMI CTAG 1 cut(s) 294
StyD4I CCNGG 1 cut(s) 190
TaaI ACNGT 2 cut(s) 316, 405
TaqI TCGA 1 cut(s) 142
TasI AATT 1 cut(s) 45
TfiI GAWTC 3 cut(s) 266, 369, 470
TseFI GTSAC 1 cut(s) 64
TseI GCWGC 3 cut(s) 38, 179, 341
Tsp45I GTSAC 1 cut(s) 64
TspDTI ATGAA 1 cut(s) 44
TspGWI ACGGA 1 cut(s) 29
XapI RAATTY 1 cut(s) 45
XceI RCATGY 1 cut(s) 58
XmiI GTMKAC 1 cut(s) 116
XspI CTAG 1 cut(s) 294
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.