FvH4_6g42830

Phosphoribosylaminoimidazole carboxylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0008753
Physical Location & Seq
Forward (+)
33271031 .. 33276557
5527 bp
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UTR
Exon/CDS
Intron
FvH4_6g42830.t1

Sequence Viewer

Length: 378 bp
ATGCATTCTTATGCATTGTCTGCCCGGGAAAGAGGAATTCAGGTCATGATTGCTGATGCTGGTGGCGTAGCTCACTCGCCAGGAGTGGTAGCTACATCCACTTTTCCATTGCCTGTTATTGGTGTCCCTCTGCGTGCTTCTACATTGGATGGAGTTGATTCGGTTCTATCTATATTGCAGTTTAGACATCATTCTTCCATTGTTGGATACAAGACTTTTATATGCCAAGAGGGGTCCCCAGTTGCGACAGTTGCTATAAACAATGCCACCAATGCTGGTCTGCTAGAAGTCCAGATGCTAGCTGTTTATGATGCTGATCTATTTGCAAGAATCAGCCAGTATCAAGAAGACACAGAGCGAAATCTTGGCAGAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko01100 ko01110 map00230 map01100 map01110
Pfam Domains
Protein Families
AIRC ATP-grasp

Protein Analysis

126

Amino Acids

13.4

Weight (kDa)

6.02

Isoelectric Point (pI)

47.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AIRC PF00731 1 - 119 3.3e-26 AIR carboxylase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 36
AfiI CCNNNNNNNGG 1 cut(s) 119
AjnI CCWGG 1 cut(s) 79
AluBI AGCT 3 cut(s) 71, 92, 302
AluI AGCT 3 cut(s) 71, 92, 302
Ama87I CYCGRG 1 cut(s) 24
ApoI RAATTY 1 cut(s) 36
AspS9I GGNCC 1 cut(s) 234
AsuC2I CCSGG 2 cut(s) 25, 26
AsuNHI GCTAGC 1 cut(s) 298
AvaI CYCGRG 1 cut(s) 24
AvaII GGWCC 1 cut(s) 234
BbsI GAAGAC 1 cut(s) 354
BccI CCATC 1 cut(s) 143
BciT130I CCWGG 1 cut(s) 81
BciVI GTATCC 1 cut(s) 200
BcnI CCSGG 2 cut(s) 25, 26
BfaI CTAG 2 cut(s) 284, 299
BfuI GTATCC 1 cut(s) 200
Bme1390I CCNGG 3 cut(s) 25, 26, 81
Bme18I GGWCC 1 cut(s) 234
BmeT110I CYCGRG 1 cut(s) 24
BmgT120I GGNCC 1 cut(s) 234
BmiI GGNNCC 2 cut(s) 235, 236
BmrFI CCNGG 3 cut(s) 25, 26, 81
BmrI ACTGGG 1 cut(s) 233
BmsI GCATC 3 cut(s) 46, 285, 301
BmtI GCTAGC 1 cut(s) 302
BmuI ACTGGG 1 cut(s) 233
BpiI GAAGAC 1 cut(s) 354
BpuMI CCSGG 2 cut(s) 25, 26
BsaBI GATNNNNATC 1 cut(s) 315
BsaJI CCNNGG 1 cut(s) 24
Bsc4I CCNNNNNNNGG 1 cut(s) 119
Bse1I ACTGG 2 cut(s) 239, 337
Bse3DI GCAATG 1 cut(s) 107
Bse8I GATNNNNATC 1 cut(s) 315
BseBI CCWGG 1 cut(s) 81
BseDI CCNNGG 1 cut(s) 24
BseGI GGATG 2 cut(s) 95, 154
BseJI GATNNNNATC 1 cut(s) 315
BseLI CCNNNNNNNGG 1 cut(s) 119
BseMI GCAATG 1 cut(s) 107
BseNI ACTGG 2 cut(s) 239, 337
BsiHKCI CYCGRG 1 cut(s) 24
BsiSI CCGG 1 cut(s) 25
BslFI GGGAC 2 cut(s) 110, 220
BslI CCNNNNNNNGG 1 cut(s) 119
BsmFI GGGAC 2 cut(s) 110, 220
BsmI GAATGC 1 cut(s) 4
BsoBI CYCGRG 1 cut(s) 24
Bsp143I GATC 1 cut(s) 316
BspHI TCATGA 1 cut(s) 45
BspLI GGNNCC 2 cut(s) 235, 236
BspOI GCTAGC 1 cut(s) 302
BsrDI GCAATG 1 cut(s) 107
BsrI ACTGG 2 cut(s) 239, 337
BssECI CCNNGG 1 cut(s) 24
BssMI GATC 1 cut(s) 316
Bst2UI CCWGG 1 cut(s) 81
Bst4CI ACNGT 1 cut(s) 250
BstAPI GCANNNNNTGC 1 cut(s) 20
BstC8I GCNNGC 2 cut(s) 135, 300
BstF5I GGATG 2 cut(s) 95, 154
BstKTI GATC 1 cut(s) 319
BstMBI GATC 1 cut(s) 316
BstMWI GCNNNNNNNGC 3 cut(s) 20, 251, 272
BstNI CCWGG 1 cut(s) 81
BstSCI CCNGG 3 cut(s) 23, 24, 79
BstV2I GAAGAC 1 cut(s) 354
BsuI GTATCC 1 cut(s) 200
BtsCI GGATG 2 cut(s) 95, 154
Cac8I GCNNGC 2 cut(s) 135, 300
CciI TCATGA 1 cut(s) 45
Cfr13I GGNCC 1 cut(s) 234
Cfr9I CCCGGG 1 cut(s) 24
CviAII CATG 1 cut(s) 46
CviJI RGCY 4 cut(s) 71, 92, 302, 336
CviKI_1 RGCY 4 cut(s) 71, 92, 302, 336
DpnI GATC 1 cut(s) 318
DpnII GATC 1 cut(s) 316
Eco47I GGWCC 1 cut(s) 234
Eco88I CYCGRG 1 cut(s) 24
EcoO109I RGGNCCY 1 cut(s) 234
EcoRI GAATTC 1 cut(s) 36
EcoRII CCWGG 1 cut(s) 79
EcoT22I ATGCAT 2 cut(s) 6, 16
FaeI CATG 1 cut(s) 49
FaiI YATR 7 cut(s) 12, 47, 173, 221, 223, 257, 309
FaqI GGGAC 2 cut(s) 110, 220
FatI CATG 1 cut(s) 45
FokI GGATG 2 cut(s) 82, 161
FspBI CTAG 2 cut(s) 284, 299
HapII CCGG 1 cut(s) 25
Hin1II CATG 1 cut(s) 49
HinfI GANTC 2 cut(s) 158, 330
HpaII CCGG 1 cut(s) 25
Hpy188III TCNNGA 3 cut(s) 46, 292, 344
HpyCH4III ACNGT 1 cut(s) 250
HpyCH4V TGCA 4 cut(s) 4, 14, 178, 326
HpyF10VI GCNNNNNNNGC 3 cut(s) 20, 251, 272
Hsp92II CATG 1 cut(s) 49
KflI GGGWCCC 1 cut(s) 234
Kzo9I GATC 1 cut(s) 316
LweI GCATC 3 cut(s) 46, 285, 301
MaeI CTAG 2 cut(s) 284, 299
MalI GATC 1 cut(s) 318
MboI GATC 1 cut(s) 316
MboII GAAGA 2 cut(s) 186, 359
MluCI AATT 1 cut(s) 36
MmeI TCCRAC 1 cut(s) 184
MnlI CCTC 3 cut(s) 26, 138, 223
Mph1103I ATGCAT 2 cut(s) 6, 16
MslI CAYNNNNRTG 1 cut(s) 9
MspI CCGG 1 cut(s) 25
MspR9I CCNGG 3 cut(s) 25, 26, 81
Mva1269I GAATGC 1 cut(s) 4
MvaI CCWGG 1 cut(s) 81
MwoI GCNNNNNNNGC 3 cut(s) 20, 251, 272
NciI CCSGG 2 cut(s) 25, 26
NdeII GATC 1 cut(s) 316
NheI GCTAGC 1 cut(s) 298
NlaIII CATG 1 cut(s) 49
NlaIV GGNNCC 2 cut(s) 235, 236
NsiI ATGCAT 2 cut(s) 6, 16
PagI TCATGA 1 cut(s) 45
PctI GAATGC 1 cut(s) 4
PfeI GAWTC 2 cut(s) 158, 330
PpuMI RGGWCCY 1 cut(s) 234
Psp5II RGGWCCY 1 cut(s) 234
Psp6I CCWGG 1 cut(s) 79
PspGI CCWGG 1 cut(s) 79
PspN4I GGNNCC 2 cut(s) 235, 236
PspPI GGNCC 1 cut(s) 234
PspPPI RGGWCCY 1 cut(s) 234
RseI CAYNNNNRTG 1 cut(s) 9
Sau3AI GATC 1 cut(s) 316
Sau96I GGNCC 1 cut(s) 234
ScrFI CCNGG 3 cut(s) 25, 26, 81
SetI ASST 4 cut(s) 45, 73, 94, 304
SfaNI GCATC 3 cut(s) 46, 285, 301
SinI GGWCC 1 cut(s) 234
SmaI CCCGGG 1 cut(s) 26
SmiMI CAYNNNNRTG 1 cut(s) 9
Sse9I AATT 1 cut(s) 36
SspMI CTAG 2 cut(s) 284, 299
StyD4I CCNGG 3 cut(s) 23, 24, 79
TaaI ACNGT 1 cut(s) 250
TasI AATT 1 cut(s) 36
TfiI GAWTC 2 cut(s) 158, 330
TspMI CCCGGG 1 cut(s) 24
VpaK11BI GGWCC 1 cut(s) 234
XapI RAATTY 1 cut(s) 36
XmaI CCCGGG 1 cut(s) 24
XspI CTAG 2 cut(s) 284, 299
Zsp2I ATGCAT 2 cut(s) 6, 16
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.