MD12G1244300.v1.1

Phosphoribosylaminoimidazole carboxylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
OG0008753
Physical Location & Seq
Forward (+)
31502864 .. 31507680
4817 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1244300.v1.1.491

Sequence Viewer

Length: 1932 bp
ATGCTTCAGCAGAGCTCTAGCTGCTGTGACTCCCTCTTCGCGTCGCCGGATTTCGAGTTCAGGCCGTGTTTGGCCTCGCCGAAAACCAAAACCGCATTCTCCTGCTCCATGGAAAAGCACAAGCTGCTTCTCACTTCTGCTTCTTCTTCTCTCTCGCTCAAGCAGCAGTTCCAAACGAAGCGCAATCCAGTCCTCGCCTGCCGAGCGTCACGTGACCCTCAACTGACTTCTGGGAGAGATGATGCAGCCGTTCATGGAGTTGCTGATGTGATTGTTGGTGTTCTTGGAGGAGGCCAACTGGGTCGGATGCTCTGCCAAGCAGCTTCGCAAATGGCGATTAAAGTGATGGTACTGGACCCACAAGAGAACTGCCCAGCTAGTGAGATTGCCCATCATCATATGGTTGGAAGCTTCGATGATAGCGCAACGGTCCAGGAATTCGCGAAGAGGTGTGGAGTGCTGACTGTGGAAATTGAGCATGTGGATGTGGAGACTTTGGAGAAGCTTGAGCAGCAAGGAGTGGATTGCCAACCCAAAGCCTCTACGATCAGAATAATTCAGGATAAGTATCTCCAAAAGGTTCATTTTTCAAAGCATGATATTCCCCTTCCTGAATTCATGCAGATAGATGATCTTGAAGGTGCCAAGAGAGCAGGGGACCTCTTTGGCTATCCTCTTATGATAAAAAGTAAAAGGTTAGCTTACGATGGACGTGGAAATGCTGTTGCTAAGAGTGAGGATGAGCTTTCATCTGCTGTGACTGCTCTTGGAGGGTTTGATCGTGGTTTGTATGTTGAGAAATGGGCCCCATTTGTAAAGGAGCTGGCTGTTATTGTCGCAAGAGGAAGAGACAATTCTATCGCGTGCTACCCTGTTGTTGAAACAATACACAAGGAAAACATTTGTCACATTGTAAAGGCACCTGCTAACATGTCATGGAAGATCAGAAAGCTGGCCACTGATATTGCAACCAGAGCTGTTCGTTCATTAGAAGGTGCTGGTGTCTTTGCAGTTGAGTTGTTCTTAACAAAGGATGATCAGATTTTGCTAAATGAAGTAGCTCCTAGACCTCACAATAGTGGTCATCACACAATAGAGTCTTGCTACACTTCACAGTATGAACAGCATTTGAGGGCTGTTGTTGGTCTTCCACTTGGTGATCCATCGATGAAAACTCCAGCTGCGATTATGTACAATTTACTTGGTGAAGATGAGGGGGAATCTGGTTTCCTTCTAGCTCAGCAGCTGATTGGAAGGGCATTGCGTATTCCAGGGGCCACTGTTCATTGGTATGATAAGCCAGAAATGCGGAAGCAGCGGAAGATGGGTCATATCACCATTGTTGGACCTTCCCTGGGCAATGTAGAAAAGCTTCTAGAGTCGATGCTAAATGAAGAAAGATTCGATTGTCAGTCTGCAGTCACACCGCGTGTTGGTATCGTAATGGGCTCTGATTCAGATCTTCCTATTATGAAAGATGCTGCAAAGATTTTGAATATGTTTGGAGTACCTAATGAGGTGAGAATAGTTTCAGCACATCGAACTCCTGAATTGATGTATTCTTATGCCTTGTCTGCTCGGGAGAGAGGCATTCAGGTCATCATTGCTGGTGCTGGTGGGGCAGCTCACTTGCCAGGCATGGTAGCTGCCCTCACTCCTTTGCCCGTTATTGGTGTCCCTGTGCGCGCTTCTACATTGGATGGAATCGATTCTCTTTTATCCATTGTGCAGATGCCGAGAGGGGTCCCAGTTGCAACAGTAGCTGTAAACAATGCCACCAATGCTGGTTTGCTGGCAGTTCGGATATTGGGTGTTTGTGATGCTGATCTAGTATCAAGAATGACCCAATATCAAGAAGACACACGGGACGAAGTTTTGACAAAGGCAGAGAAACTACAGAGAGATGGTTGGGAGTCTTATTTGAATCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko01100 ko01110 map00230 map01100 map01110
Pfam Domains
Protein Families
AIRC ATP-grasp

Protein Analysis

644

Amino Acids

70.08

Weight (kDa)

6.24

Isoelectric Point (pI)

42.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RS_preATP-grasp-like PF22660 92 - 187 1.4e-32 Ribonucleotide synthetase preATP-grasp domain
CPSase_L_D2 PF02786 188 - 359 4.4e-07 Carbamoyl-phosphate synthase L chain, ATP binding domain
ATP-grasp PF02222 195 - 373 6.6e-64 ATP-grasp domain
Dala_Dala_lig_C PF07478 217 - 357 1.7e-09 D-ala D-ala ligase C-terminus
PurK_C PF17769 395 - 456 5.2e-18 Phosphoribosylaminoimidazole carboxylase C-terminal domain
AIRC PF00731 477 - 623 9.2e-65 AIR carboxylase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 931
Acc36I ACCTGC 1 cut(s) 931
AccB1I GGYRCC 2 cut(s) 641, 919
AccII CGCG 5 cut(s) 41, 443, 863, 1429, 1686
AciI CCGC 4 cut(s) 93, 1309, 1318, 1427
AclWI GGATC 1 cut(s) 1154
AcoI YGGCCR 1 cut(s) 954
AcsI RAATTY 2 cut(s) 437, 614
AcvI CACGTG 1 cut(s) 212
AdeI CACNNNGTG 2 cut(s) 1157, 1430
AfaI GTAC 3 cut(s) 351, 1193, 1509
AfiI CCNNNNNNNGG 3 cut(s) 1355, 1433, 1670
AflIII ACRYGT 1 cut(s) 930
AgsI TTSAA 5 cut(s) 591, 638, 881, 1495, 1924
AjiI CACGTC 1 cut(s) 713
AjnI CCWGG 4 cut(s) 432, 1270, 1353, 1633
AjuI GAANNNNNNNTTGG 2 cut(s) 80, 112
AleI CACNNNNGTG 1 cut(s) 1077
AloI GAACNNNNNNTCC 2 cut(s) 41, 73
Alw21I GWGCWC 1 cut(s) 17
Alw26I GTCTC 2 cut(s) 485, 843
AlwI GGATC 1 cut(s) 1154
AlwNI CAGNNNCTG 2 cut(s) 1246, 1763
Ama87I CYCGRG 1 cut(s) 1578
AoxI GGCC 6 cut(s) 62, 72, 292, 804, 954, 1275
ApaI GGGCCC 1 cut(s) 808
ApoI RAATTY 2 cut(s) 437, 614
ArsI GACNNNNNNTTYG 2 cut(s) 20, 52
Asp700I GAANNNNTTC 3 cut(s) 1371, 1528, 1708
AspLEI GCGC 4 cut(s) 183, 425, 1686, 1688
AspS9I GGNCC 8 cut(s) 355, 430, 658, 804, 805, 1275, 1346, 1744
AsuHPI GGTGA 4 cut(s) 1169, 1217, 1327, 1531
AvaI CYCGRG 1 cut(s) 1578
AvaII GGWCC 5 cut(s) 355, 430, 658, 1346, 1744
BaeGI GKGCMC 1 cut(s) 808
BalI TGGCCA 1 cut(s) 956
BanI GGYRCC 2 cut(s) 641, 919
BanII GRGCYC 3 cut(s) 17, 808, 1451
BarI GAAGNNNNNNTAC 2 cut(s) 1356, 1388
BbrPI CACGTG 1 cut(s) 212
BbsI GAAGAC 2 cut(s) 1139, 1863
Bbv12I GWGCWC 1 cut(s) 17
BccI CCATC 7 cut(s) 340, 399, 701, 1171, 1318, 1694, 1898
BceAI ACGGC 2 cut(s) 49, 233
BciT130I CCWGG 4 cut(s) 434, 1272, 1355, 1635
BclI TGATCA 1 cut(s) 1036
BcoDI GTCTC 2 cut(s) 485, 843
BfaI CTAG 6 cut(s) 18, 378, 1065, 1235, 1376, 1829
BfmI CTRYAG 2 cut(s) 1416, 1895
BfuAI ACCTGC 1 cut(s) 931
BglII AGATCT 1 cut(s) 1459
BlpI GCTNAGC 1 cut(s) 1239
Bme1390I CCNGG 4 cut(s) 434, 1272, 1355, 1635
Bme18I GGWCC 5 cut(s) 355, 430, 658, 1346, 1744
BmeT110I CYCGRG 1 cut(s) 1578
BmgBI CACGTC 1 cut(s) 713
BmgT120I GGNCC 8 cut(s) 355, 430, 658, 804, 805, 1275, 1346, 1744
BmiI GGNNCC 9 cut(s) 357, 643, 659, 806, 807, 921, 1276, 1745, 1746
BmrFI CCNGG 4 cut(s) 434, 1272, 1355, 1635
BmrI ACTGGG 2 cut(s) 308, 1742
BmsI GCATC 6 cut(s) 232, 297, 1374, 1468, 1722, 1810
BmuI ACTGGG 2 cut(s) 308, 1742
BpiI GAAGAC 2 cut(s) 1139, 1863
BpmI CTGGAG 1 cut(s) 1161
Bpu1102I GCTNAGC 1 cut(s) 1239
BpuEI CTTGAG 2 cut(s) 143, 527
Bsa29I ATCGAT 2 cut(s) 1166, 1707
BsaAI YACGTR 1 cut(s) 212
BsaBI GATNNNNATC 3 cut(s) 567, 1458, 1824
BsaJI CCNNGG 4 cut(s) 108, 1271, 1353, 1354
Bsc4I CCNNNNNNNGG 3 cut(s) 1355, 1433, 1670
Bse1I ACTGG 4 cut(s) 188, 303, 357, 1748
Bse3DI GCAATG 3 cut(s) 1259, 1366, 1602
Bse8I GATNNNNATC 3 cut(s) 567, 1458, 1824
BseBI CCWGG 4 cut(s) 434, 1272, 1355, 1635
BseCI ATCGAT 2 cut(s) 1166, 1707
BseDI CCNNGG 4 cut(s) 108, 1271, 1353, 1354
BseGI GGATG 5 cut(s) 312, 490, 745, 1039, 1705
BseJI GATNNNNATC 3 cut(s) 567, 1458, 1824
BseLI CCNNNNNNNGG 3 cut(s) 1355, 1433, 1670
BseMI GCAATG 3 cut(s) 1259, 1366, 1602
BseMII CTCAG 1 cut(s) 1253
BseNI ACTGG 4 cut(s) 188, 303, 357, 1748
BsePI GCGCGC 1 cut(s) 1684
BseRI GAGGAG 1 cut(s) 303
BseSI GKGCMC 1 cut(s) 808
BseYI CCCAGC 1 cut(s) 373
BsgI GTGCAG 1 cut(s) 1748
Bsh1236I CGCG 5 cut(s) 41, 443, 863, 1429, 1686
BshFI GGCC 6 cut(s) 64, 74, 294, 806, 956, 1277
BshNI GGYRCC 2 cut(s) 641, 919
BshVI ATCGAT 2 cut(s) 1166, 1707
BsiHKAI GWGCWC 1 cut(s) 17
BsiHKCI CYCGRG 1 cut(s) 1578
BsiSI CCGG 1 cut(s) 47
BslFI GGGAC 4 cut(s) 671, 1661, 1730, 1880
BslI CCNNNNNNNGG 3 cut(s) 1355, 1433, 1670
BsmAI GTCTC 2 cut(s) 485, 843
BsmFI GGGAC 4 cut(s) 671, 1661, 1730, 1880
BsmI GAATGC 2 cut(s) 95, 1590
BsnI GGCC 6 cut(s) 64, 74, 294, 806, 956, 1277
BsoBI CYCGRG 1 cut(s) 1578
Bsp120I GGGCCC 1 cut(s) 804
Bsp1286I GDGCHC 3 cut(s) 17, 808, 1451
Bsp1407I TGTACA 1 cut(s) 1191
Bsp143I GATC 8 cut(s) 546, 631, 778, 942, 1036, 1159, 1459, 1825
Bsp1720I GCTNAGC 1 cut(s) 1239
Bsp19I CCATGG 1 cut(s) 108
Bsp68I TCGCGA 1 cut(s) 443
BspACI CCGC 4 cut(s) 93, 1309, 1318, 1427
BspANI GGCC 6 cut(s) 64, 74, 294, 806, 956, 1277
BspCNI CTCAG 1 cut(s) 1252
BspDI ATCGAT 2 cut(s) 1166, 1707
BspFNI CGCG 5 cut(s) 41, 443, 863, 1429, 1686
BspLI GGNNCC 9 cut(s) 357, 643, 659, 806, 807, 921, 1276, 1745, 1746
BspMAI CTGCAG 1 cut(s) 1420
BspMI ACCTGC 1 cut(s) 931
BspPI GGATC 1 cut(s) 1154
BspT107I GGYRCC 2 cut(s) 641, 919
BsrDI GCAATG 3 cut(s) 1259, 1366, 1602
BsrGI TGTACA 1 cut(s) 1191
BsrI ACTGG 4 cut(s) 188, 303, 357, 1748
BssECI CCNNGG 4 cut(s) 108, 1271, 1353, 1354
BssHII GCGCGC 1 cut(s) 1684
BssMI GATC 8 cut(s) 546, 631, 778, 942, 1036, 1159, 1459, 1825
BssT1I CCWWGG 1 cut(s) 108
Bst2UI CCWGG 4 cut(s) 434, 1272, 1355, 1635
Bst4CI ACNGT 5 cut(s) 430, 466, 1116, 1282, 1759
Bst6I CTCTTC 3 cut(s) 41, 440, 841
BstAPI GCANNNNNTGC 1 cut(s) 124
BstAUI TGTACA 1 cut(s) 1191
BstBAI YACGTR 1 cut(s) 212
BstC8I GCNNGC 6 cut(s) 199, 825, 865, 954, 1686, 1794
BstDEI CTNAG 2 cut(s) 729, 1239
BstDSI CCRYGG 1 cut(s) 108
BstF5I GGATG 5 cut(s) 312, 490, 745, 1039, 1705
BstFNI CGCG 5 cut(s) 41, 443, 863, 1429, 1686
BstHHI GCGC 4 cut(s) 183, 425, 1686, 1688
BstKTI GATC 8 cut(s) 549, 634, 781, 945, 1039, 1162, 1462, 1828
BstMAI GTCTC 2 cut(s) 485, 843
BstMBI GATC 8 cut(s) 546, 631, 778, 942, 1036, 1159, 1459, 1825
BstNI CCWGG 4 cut(s) 434, 1272, 1355, 1635
BstNSI RCATGY 2 cut(s) 482, 934
BstSCI CCNGG 4 cut(s) 432, 1270, 1353, 1633
BstSFI CTRYAG 2 cut(s) 1416, 1895
BstSLI GKGCMC 1 cut(s) 808
BstUI CGCG 5 cut(s) 41, 443, 863, 1429, 1686
BstV2I GAAGAC 2 cut(s) 1139, 1863
BstX2I RGATCY 1 cut(s) 1459
BstYI RGATCY 1 cut(s) 1459
Bsu15I ATCGAT 2 cut(s) 1166, 1707
BsuRI GGCC 6 cut(s) 64, 74, 294, 806, 956, 1277
BsuTUI ATCGAT 2 cut(s) 1166, 1707
BtgI CCRYGG 1 cut(s) 108
BtrI CACGTC 1 cut(s) 713
BtsCI GGATG 5 cut(s) 312, 490, 745, 1039, 1705
BtsIMutI CAGTG 2 cut(s) 957, 1278
BtuMI TCGCGA 1 cut(s) 443
BveI ACCTGC 1 cut(s) 931
Cac8I GCNNGC 6 cut(s) 199, 825, 865, 954, 1686, 1794
CaiI CAGNNNCTG 2 cut(s) 1246, 1763
CfoI GCGC 4 cut(s) 183, 425, 1686, 1688
Cfr13I GGNCC 8 cut(s) 355, 430, 658, 804, 805, 1275, 1346, 1744
ClaI ATCGAT 2 cut(s) 1166, 1707
CseI GACGC 2 cut(s) 30, 195
Csp6I GTAC 3 cut(s) 350, 1192, 1508
CspCI CAANNNNNGTGG 2 cut(s) 946, 981
CviAII CATG 8 cut(s) 109, 254, 479, 596, 619, 931, 936, 1639
CviQI GTAC 3 cut(s) 350, 1192, 1508
DdeI CTNAG 2 cut(s) 729, 1239
DpnI GATC 8 cut(s) 548, 633, 780, 944, 1038, 1161, 1461, 1827
DpnII GATC 8 cut(s) 546, 631, 778, 942, 1036, 1159, 1459, 1825
DraIII CACNNNGTG 2 cut(s) 1157, 1430
EaeI YGGCCR 1 cut(s) 954
Eam1104I CTCTTC 3 cut(s) 41, 440, 841
EarI CTCTTC 3 cut(s) 41, 440, 841
Ecl136II GAGCTC 1 cut(s) 15
Eco130I CCWWGG 1 cut(s) 108
Eco24I GRGCYC 3 cut(s) 17, 808, 1451
Eco47I GGWCC 5 cut(s) 355, 430, 658, 1346, 1744
Eco53kI GAGCTC 1 cut(s) 15
Eco72I CACGTG 1 cut(s) 212
Eco88I CYCGRG 1 cut(s) 1578
EcoICRI GAGCTC 1 cut(s) 15
EcoO109I RGGNCCY 3 cut(s) 658, 805, 1744
EcoRI GAATTC 2 cut(s) 437, 614
EcoRII CCWGG 4 cut(s) 432, 1270, 1353, 1633
EcoT14I CCWWGG 1 cut(s) 108
EcoT38I GRGCYC 3 cut(s) 17, 808, 1451
ErhI CCWWGG 1 cut(s) 108
FaeI CATG 8 cut(s) 112, 257, 482, 599, 622, 934, 939, 1642
FalI AAGNNNNNCTT 2 cut(s) 685, 717
FaqI GGGAC 4 cut(s) 671, 1661, 1730, 1880
FatI CATG 8 cut(s) 108, 253, 478, 595, 618, 930, 935, 1638
FauNDI CATATG 1 cut(s) 399
FbaI TGATCA 1 cut(s) 1036
FokI GGATG 5 cut(s) 319, 497, 752, 1046, 1712
FriOI GRGCYC 3 cut(s) 17, 808, 1451
FspBI CTAG 6 cut(s) 18, 378, 1065, 1235, 1376, 1829
GlaI GCGC 4 cut(s) 182, 424, 1685, 1687
GsaI CCCAGC 1 cut(s) 377
GsuI CTGGAG 1 cut(s) 1161
HaeIII GGCC 6 cut(s) 64, 74, 294, 806, 956, 1277
HapII CCGG 1 cut(s) 47
HgaI GACGC 2 cut(s) 30, 195
HhaI GCGC 4 cut(s) 183, 425, 1686, 1688
Hin1II CATG 8 cut(s) 112, 257, 482, 599, 622, 934, 939, 1642
Hin6I GCGC 4 cut(s) 181, 423, 1684, 1686
HinP1I GCGC 4 cut(s) 181, 423, 1684, 1686
HindIII AAGCTT 3 cut(s) 409, 503, 1370
HpaII CCGG 1 cut(s) 47
HphI GGTGA 4 cut(s) 1169, 1217, 1327, 1531
Hpy166II GTNNAC 1 cut(s) 1768
Hpy188I TCNGA 7 cut(s) 306, 551, 947, 1041, 1453, 1459, 1803
Hpy188III TCNNGA 9 cut(s) 442, 560, 611, 635, 1376, 1547, 1580, 1836, 1853
Hpy8I GTNNAC 1 cut(s) 1768
Hpy99I CGWCG 1 cut(s) 46
HpyAV CCTTC 6 cut(s) 617, 632, 986, 1241, 1248, 1359
HpyCH4III ACNGT 5 cut(s) 430, 466, 1116, 1282, 1759
HpyCH4IV ACGT 2 cut(s) 211, 712
HpyCH4V TGCA 8 cut(s) 245, 622, 968, 1010, 1418, 1484, 1729, 1754
HpyF3I CTNAG 2 cut(s) 729, 1239
HpySE526I ACGT 2 cut(s) 211, 712
Hsp92II CATG 8 cut(s) 112, 257, 482, 599, 622, 934, 939, 1642
HspAI GCGC 4 cut(s) 181, 423, 1684, 1686
KflI GGGWCCC 1 cut(s) 1744
Ksp22I TGATCA 1 cut(s) 1036
Kzo9I GATC 8 cut(s) 546, 631, 778, 942, 1036, 1159, 1459, 1825
LmnI GCTCC 3 cut(s) 110, 820, 1066
LweI GCATC 6 cut(s) 232, 297, 1374, 1468, 1722, 1810
MaeI CTAG 6 cut(s) 18, 378, 1065, 1235, 1376, 1829
MaeII ACGT 2 cut(s) 211, 712
MaeIII GTNAC 6 cut(s) 26, 207, 212, 757, 905, 1420
MalI GATC 8 cut(s) 548, 633, 780, 944, 1038, 1161, 1461, 1827
MboI GATC 8 cut(s) 546, 631, 778, 942, 1036, 1159, 1459, 1825
MflI RGATCY 1 cut(s) 1459
MhlI GDGCHC 3 cut(s) 17, 808, 1451
MlsI TGGCCA 1 cut(s) 956
MluCI AATT 7 cut(s) 437, 471, 555, 614, 853, 1195, 1550
MluNI TGGCCA 1 cut(s) 956
MlyI GAGTC 4 cut(s) 23, 1106, 1388, 1922
MmeI TCCRAC 3 cut(s) 284, 385, 1324
Mox20I TGGCCA 1 cut(s) 956
MroXI GAANNNNTTC 3 cut(s) 1371, 1528, 1708
MscI TGGCCA 1 cut(s) 956
MseI TTAA 2 cut(s) 339, 1025
MslI CAYNNNNRTG 3 cut(s) 483, 1077, 1290
Msp20I TGGCCA 1 cut(s) 956
MspA1I CMGCKG 3 cut(s) 1181, 1246, 1318
MspI CCGG 1 cut(s) 47
MspR9I CCNGG 4 cut(s) 434, 1272, 1355, 1635
Mva1269I GAATGC 2 cut(s) 95, 1590
MvaI CCWGG 4 cut(s) 434, 1272, 1355, 1635
MvnI CGCG 5 cut(s) 41, 443, 863, 1429, 1686
NcoI CCATGG 1 cut(s) 108
NdeI CATATG 1 cut(s) 399
NdeII GATC 8 cut(s) 546, 631, 778, 942, 1036, 1159, 1459, 1825
NlaIII CATG 8 cut(s) 112, 257, 482, 599, 622, 934, 939, 1642
NlaIV GGNNCC 9 cut(s) 357, 643, 659, 806, 807, 921, 1276, 1745, 1746
NmeAIII GCCGAG 2 cut(s) 227, 1761
NmuCI GTSAC 6 cut(s) 26, 207, 212, 757, 905, 1420
NruI TCGCGA 1 cut(s) 443
NspI RCATGY 2 cut(s) 482, 934
OliI CACNNNNGTG 1 cut(s) 1077
PaqCI CACCTGC 1 cut(s) 931
PasI CCCWGGG 1 cut(s) 1354
PauI GCGCGC 1 cut(s) 1684
PciI ACATGT 1 cut(s) 930
PcsI WCGNNNNNNNCGW 1 cut(s) 332
PctI GAATGC 2 cut(s) 95, 1590
PdmI GAANNNNTTC 3 cut(s) 1371, 1528, 1708
PfeI GAWTC 6 cut(s) 1220, 1401, 1454, 1704, 1709, 1924
PfoI TCCNGGA 1 cut(s) 432
PleI GAGTC 4 cut(s) 23, 1105, 1387, 1921
PmaCI CACGTG 1 cut(s) 212
PmlI CACGTG 1 cut(s) 212
PpsI GAGTC 4 cut(s) 23, 1105, 1387, 1921
Ppu21I YACGTR 1 cut(s) 212
PpuMI RGGWCCY 2 cut(s) 658, 1744
PscI ACATGT 1 cut(s) 930
Psp124BI GAGCTC 1 cut(s) 17
Psp5II RGGWCCY 2 cut(s) 658, 1744
Psp6I CCWGG 4 cut(s) 432, 1270, 1353, 1633
PspCI CACGTG 1 cut(s) 212
PspFI CCCAGC 1 cut(s) 373
PspGI CCWGG 4 cut(s) 432, 1270, 1353, 1633
PspN4I GGNNCC 9 cut(s) 357, 643, 659, 806, 807, 921, 1276, 1745, 1746
PspOMI GGGCCC 1 cut(s) 804
PspPI GGNCC 8 cut(s) 355, 430, 658, 804, 805, 1275, 1346, 1744
PspPPI RGGWCCY 2 cut(s) 658, 1744
PstI CTGCAG 1 cut(s) 1420
PstNI CAGNNNCTG 2 cut(s) 1246, 1763
PsuI RGATCY 1 cut(s) 1459
PteI GCGCGC 1 cut(s) 1684
PvuII CAGCTG 2 cut(s) 1181, 1246
RruI TCGCGA 1 cut(s) 443
RsaI GTAC 3 cut(s) 351, 1193, 1509
RsaNI GTAC 3 cut(s) 350, 1192, 1508
RseI CAYNNNNRTG 3 cut(s) 483, 1077, 1290
SacI GAGCTC 1 cut(s) 17
SaqAI TTAA 2 cut(s) 339, 1025
Sau3AI GATC 8 cut(s) 546, 631, 778, 942, 1036, 1159, 1459, 1825
Sau96I GGNCC 8 cut(s) 355, 430, 658, 804, 805, 1275, 1346, 1744
SchI GAGTC 4 cut(s) 23, 1106, 1388, 1922
ScrFI CCNGG 4 cut(s) 434, 1272, 1355, 1635
SduI GDGCHC 3 cut(s) 17, 808, 1451
SfaNI GCATC 6 cut(s) 232, 297, 1374, 1468, 1722, 1810
SfcI CTRYAG 2 cut(s) 1416, 1895
SinI GGWCC 5 cut(s) 355, 430, 658, 1346, 1744
SmiMI CAYNNNNRTG 3 cut(s) 483, 1077, 1290
SmlI CTYRAG 2 cut(s) 158, 506
SmoI CTYRAG 2 cut(s) 158, 506
Sse9I AATT 7 cut(s) 437, 471, 555, 614, 853, 1195, 1550
SsiI CCGC 4 cut(s) 93, 1309, 1318, 1427
SspMI CTAG 6 cut(s) 18, 378, 1065, 1235, 1376, 1829
SstI GAGCTC 1 cut(s) 17
StyD4I CCNGG 4 cut(s) 432, 1270, 1353, 1633
StyI CCWWGG 1 cut(s) 108
TaaI ACNGT 5 cut(s) 430, 466, 1116, 1282, 1759
TaiI ACGT 2 cut(s) 214, 715
TaqI TCGA 7 cut(s) 54, 414, 1166, 1382, 1404, 1540, 1707
TasI AATT 7 cut(s) 437, 471, 555, 614, 853, 1195, 1550
TatI WGTACW 1 cut(s) 1191
TfiI GAWTC 6 cut(s) 1220, 1401, 1454, 1704, 1709, 1924
Tru1I TTAA 2 cut(s) 339, 1025
Tru9I TTAA 2 cut(s) 339, 1025
TscAI CASTG 2 cut(s) 964, 1285
TseFI GTSAC 6 cut(s) 26, 207, 212, 757, 905, 1420
Tsp45I GTSAC 6 cut(s) 26, 207, 212, 757, 905, 1420
TspRI CASTG 2 cut(s) 964, 1285
VpaK11BI GGWCC 5 cut(s) 355, 430, 658, 1346, 1744
XapI RAATTY 2 cut(s) 437, 614
XbaI TCTAGA 1 cut(s) 1375
XceI RCATGY 2 cut(s) 482, 934
XmnI GAANNNNTTC 3 cut(s) 1371, 1528, 1708
XspI CTAG 6 cut(s) 18, 378, 1065, 1235, 1376, 1829
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.