AT2G05760

Permease family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0004561
Physical Location & Seq
Forward (+)
2180755 .. 2183904
3150 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G05760.1

Sequence Viewer

Length: 1563 bp
ATGGCGGAGATAAGTCATCCTCCAATGGAACAGCTTCAAGACCTTGAATATTGCATCGACTCTAACCCTCCTTGGCCCGAGACGGTGTTACTAGCATTCCAAAACTACATACTAATGCTTGGAACAAGTGCTTTTATACCCGCATTGCTCGTTCCAGCTATGGGTGGCTCTGATGGGGACAGAGCGCGGGTTATACAGACATTACTCTTTGTAGCTGGTATCAAAACACTTCTTCAAGCTCTCTTTGGTACAAGGTTGCCTGCTGTTGTTGGAGGCTCTCTTGCTTATGTTGTCCCTATTGCTTATATCATCAATGACTCTTCTTTGCAAAAGATATCTAATGATCATGAGAGATTTATTCATACAATGCGTGCTATACAAGGGGCGTTGATTGTAGCATCAAGCATACAGATTATTCTAGGATATAGCCAAGTTTGGGGTCTTTTCTCAAGGTTCTTCAGTCCTCTAGGAATGGCACCGGTTGTCGGATTGGTTGGTCTCGGGATGTTTCAGCGAGGATTTCCTCAGCTCGGGAACTGCATCGAGATTGGACTACCGATGCTATTGCTTGTCATTGGACTAACCCAATATCTAAAACATGTTAGACCATTTAAAGATGTCCCAATCTTTGAAAGATTTCCGATATTGATCTGTGTTACAATTGTTTGGATCTACGCTGTAATTCTGACCGCAAGTGGTGCTTATAGAGGCAAACCATCACTTACACAGCATAGTTGTCGAACAGACAAAGCTAATCTTATTTCAACAGCTCCATGGTTTAAGTTTCCATACCCTCTCCAGTGGGGACCTCCTACATTTTCAGTAGGCCATTCGTTTGCTATGATGTCTGCGGTTCTTGTATCCATGGTCGAGTCTACTGGAGCTTACATTGCGGCTTCAAGATTAGCTATAGCCACGCCGCCTCCTGCTTATGTATTGAGTAGAGGCATTGGATGGCAGGGCATTGGTGTATTGCTTGATGGTCTATTTGGAACAGGCACAGGCTCTACTGTTCTAGTTGAAAATGTAGGACTTCTAGGGTTAACAAGAGTTGGTAGTCGTCGTGTTGTTCAAGTATCTGCAGGCTTCATGATTGTTTTCTCAACATTGGGCAAATTCGGAGCTGTTTTCGCATCGATACCAGTCCCGATATACGCAGCGTTGCACTGCATCCTCTTCGGCCTTGTTGCTGCGGTTGGTCTCTCATTTCTTCAGTTCACAAACATGAACTCAATGAGAAACCTAATGATCACCGGACTTTCGCTCTTTCTCGGAATCTCCATACCTCAATTCTTCGCTCAGTACTGGGACGCTAGACATTACGGATTAGTTCACACAAACGCAGGATGGTTCAACGCATTCTTGAACACGTTATTCATGTCACCAGCAACAGTTGGTCTAATCATTGCAGTATTCATGGACAACACAATGGAAGTAGAGAGATCAAAGAAAGATAGAGGCATGCCTTGGTGGGTCAAGTTTAGAACTTTCAGAGGTGATAATCGTAATGAAGAGTTCTACACTTTGCCTTTTAACCTCAACAGATTCTTCCCTCCTACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005911 GO:0009506 GO:0030054 GO:0055044
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Xan_ur_permease

Protein Analysis

520

Amino Acids

57.13

Weight (kDa)

9.33

Isoelectric Point (pI)

33.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Xan_ur_permease PF00860 27 - 432 7.7e-64 Permease family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 475
AccI GTMKAC 1 cut(s) 875
AccII CGCG 1 cut(s) 187
AciI CCGC 8 cut(s) 5, 141, 187, 690, 851, 893, 920, 1193
AclWI GGATC 1 cut(s) 677
AcsI RAATTY 1 cut(s) 1115
AcuI CTGAAG 2 cut(s) 442, 1196
AfaI GTAC 2 cut(s) 250, 1304
AfiI CCNNNNNNNGG 4 cut(s) 161, 436, 485, 530
AflIII ACRYGT 2 cut(s) 598, 1368
AgeI ACCGGT 1 cut(s) 478
Alw26I GTCTC 3 cut(s) 74, 503, 1205
AlwI GGATC 1 cut(s) 677
Ama87I CYCGRG 3 cut(s) 77, 500, 530
AoxI GGCC 3 cut(s) 74, 826, 1180
ApeKI GCWGC 2 cut(s) 1157, 1190
ApoI RAATTY 1 cut(s) 1115
AsiGI ACCGGT 1 cut(s) 478
Asp700I GAANNNNTTC 2 cut(s) 33, 636
AspLEI GCGC 1 cut(s) 187
AspS9I GGNCC 2 cut(s) 75, 806
AsuHPI GGTGA 3 cut(s) 1243, 1374, 1508
AvaI CYCGRG 3 cut(s) 77, 500, 530
AvaII GGWCC 1 cut(s) 806
BanI GGYRCC 1 cut(s) 475
BbvCI CCTCAGC 1 cut(s) 525
BbvI GCAGC 2 cut(s) 1169, 1177
BccI CCATC 5 cut(s) 167, 724, 948, 974, 1341
BcgI CGANNNNNNTGC 6 cut(s) 547, 581, 719, 753, 1159, 1193
BciVI GTATCC 1 cut(s) 871
BclI TGATCA 2 cut(s) 343, 1248
BcoDI GTCTC 3 cut(s) 74, 503, 1205
BfaI CTAG 6 cut(s) 92, 419, 467, 1016, 1037, 1314
BfmI CTRYAG 2 cut(s) 909, 1080
BfuI GTATCC 1 cut(s) 871
BisI GCNGC 4 cut(s) 894, 920, 1158, 1191
BlsI GCNGC 4 cut(s) 895, 921, 1159, 1192
BmcAI AGTACT 1 cut(s) 1304
Bme18I GGWCC 1 cut(s) 806
BmeT110I CYCGRG 3 cut(s) 77, 500, 530
BmgT120I GGNCC 2 cut(s) 75, 806
BmiI GGNNCC 2 cut(s) 477, 807
BmrI ACTGGG 1 cut(s) 1315
BmsI GCATC 6 cut(s) 63, 407, 549, 549, 1142, 1179
BmuI ACTGGG 1 cut(s) 1315
BpmI CTGGAG 2 cut(s) 782, 900
Bpu10I CCTNAGC 1 cut(s) 525
BpuEI CTTGAG 1 cut(s) 433
Bsa29I ATCGAT 1 cut(s) 1136
BsaBI GATNNNNATC 1 cut(s) 647
BsaI GGTCTC 2 cut(s) 503, 1205
BsaJI CCNNGG 4 cut(s) 71, 773, 864, 1466
BsaWI WCCGGW 2 cut(s) 478, 1253
BsaXI ACNNNNNCTCC 2 cut(s) 907, 937
Bsc4I CCNNNNNNNGG 4 cut(s) 161, 436, 485, 530
Bse118I RCCGGY 1 cut(s) 478
Bse1I ACTGG 4 cut(s) 799, 883, 1142, 1310
Bse3DI GCAATG 3 cut(s) 143, 888, 1404
Bse8I GATNNNNATC 1 cut(s) 647
BseCI ATCGAT 1 cut(s) 1136
BseDI CCNNGG 4 cut(s) 71, 773, 864, 1466
BseGI GGATG 5 cut(s) 16, 510, 959, 1170, 1352
BseJI GATNNNNATC 1 cut(s) 647
BseLI CCNNNNNNNGG 4 cut(s) 161, 436, 485, 530
BseMI GCAATG 3 cut(s) 143, 888, 1404
BseMII CTCAG 2 cut(s) 539, 1313
BseNI ACTGG 4 cut(s) 799, 883, 1142, 1310
BseXI GCAGC 2 cut(s) 1169, 1177
Bsh1236I CGCG 1 cut(s) 187
BshFI GGCC 3 cut(s) 76, 828, 1182
BshNI GGYRCC 1 cut(s) 475
BshTI ACCGGT 1 cut(s) 478
BshVI ATCGAT 1 cut(s) 1136
BsiHKCI CYCGRG 3 cut(s) 77, 500, 530
BsiSI CCGG 2 cut(s) 479, 1254
BslFI GGGAC 6 cut(s) 191, 278, 605, 819, 1130, 1322
BslI CCNNNNNNNGG 4 cut(s) 161, 436, 485, 530
BsmAI GTCTC 3 cut(s) 74, 503, 1205
BsmBI CGTCTC 1 cut(s) 74
BsmFI GGGAC 6 cut(s) 191, 278, 605, 819, 1130, 1322
BsmI GAATGC 2 cut(s) 95, 1358
BsnI GGCC 3 cut(s) 76, 828, 1182
Bso31I GGTCTC 2 cut(s) 503, 1205
BsoBI CYCGRG 3 cut(s) 77, 500, 530
Bsp143I GATC 5 cut(s) 343, 648, 669, 1248, 1442
Bsp19I CCATGG 2 cut(s) 773, 864
BspACI CCGC 8 cut(s) 5, 141, 187, 690, 851, 893, 920, 1193
BspANI GGCC 3 cut(s) 76, 828, 1182
BspCNI CTCAG 2 cut(s) 538, 1312
BspDI ATCGAT 1 cut(s) 1136
BspFNI CGCG 1 cut(s) 187
BspHI TCATGA 2 cut(s) 346, 1089
BspLI GGNNCC 2 cut(s) 477, 807
BspMAI CTGCAG 1 cut(s) 1084
BspPI GGATC 1 cut(s) 677
BspT107I GGYRCC 1 cut(s) 475
BspTNI GGTCTC 2 cut(s) 503, 1205
BsrDI GCAATG 3 cut(s) 143, 888, 1404
BsrFI RCCGGY 1 cut(s) 478
BsrI ACTGG 4 cut(s) 799, 883, 1142, 1310
BssAI RCCGGY 1 cut(s) 478
BssECI CCNNGG 4 cut(s) 71, 773, 864, 1466
BssMI GATC 5 cut(s) 343, 648, 669, 1248, 1442
BssT1I CCWWGG 4 cut(s) 71, 773, 864, 1466
Bst4CI ACNGT 3 cut(s) 85, 1012, 1393
Bst6I CTCTTC 3 cut(s) 325, 1181, 1506
BstAPI GCANNNNNTGC 1 cut(s) 698
BstC8I GCNNGC 4 cut(s) 261, 372, 1084, 1463
BstDEI CTNAG 2 cut(s) 525, 1299
BstDSI CCRYGG 2 cut(s) 773, 864
BstF5I GGATG 5 cut(s) 16, 510, 959, 1170, 1352
BstFNI CGCG 1 cut(s) 187
BstHHI GCGC 1 cut(s) 187
BstKTI GATC 5 cut(s) 346, 651, 672, 1251, 1445
BstMAI GTCTC 3 cut(s) 74, 503, 1205
BstMBI GATC 5 cut(s) 343, 648, 669, 1248, 1442
BstMWI GCNNNNNNNGC 3 cut(s) 698, 890, 1130
BstNSI RCATGY 2 cut(s) 602, 1465
BstSFI CTRYAG 2 cut(s) 909, 1080
BstUI CGCG 1 cut(s) 187
BstV1I GCAGC 2 cut(s) 1169, 1177
BstX2I RGATCY 1 cut(s) 669
BstYI RGATCY 1 cut(s) 669
Bsu15I ATCGAT 1 cut(s) 1136
BsuI GTATCC 1 cut(s) 871
BsuRI GGCC 3 cut(s) 76, 828, 1182
BsuTUI ATCGAT 1 cut(s) 1136
BtgI CCRYGG 2 cut(s) 773, 864
BtsCI GGATG 5 cut(s) 16, 510, 959, 1170, 1352
BtsI GCAGTG 1 cut(s) 1165
BtsIMutI CAGTG 2 cut(s) 806, 1165
Cac8I GCNNGC 4 cut(s) 261, 372, 1084, 1463
CciI TCATGA 2 cut(s) 346, 1089
CfoI GCGC 1 cut(s) 187
Cfr10I RCCGGY 1 cut(s) 478
Cfr13I GGNCC 2 cut(s) 75, 806
ClaI ATCGAT 1 cut(s) 1136
CseI GACGC 1 cut(s) 1319
Csp6I GTAC 2 cut(s) 249, 1303
CspAI ACCGGT 1 cut(s) 478
CviAII CATG 9 cut(s) 347, 599, 774, 865, 1090, 1225, 1378, 1417, 1462
CviQI GTAC 2 cut(s) 249, 1303
DdeI CTNAG 2 cut(s) 525, 1299
DpnI GATC 5 cut(s) 345, 650, 671, 1250, 1444
DpnII GATC 5 cut(s) 343, 648, 669, 1248, 1442
DraI TTTAAA 1 cut(s) 613
Eam1104I CTCTTC 3 cut(s) 325, 1181, 1506
EarI CTCTTC 3 cut(s) 325, 1181, 1506
EciI GGCGGA 1 cut(s) 20
Eco130I CCWWGG 4 cut(s) 71, 773, 864, 1466
Eco31I GGTCTC 2 cut(s) 503, 1205
Eco32I GATATC 1 cut(s) 336
Eco47I GGWCC 1 cut(s) 806
Eco57I CTGAAG 2 cut(s) 442, 1196
Eco88I CYCGRG 3 cut(s) 77, 500, 530
EcoO109I RGGNCCY 1 cut(s) 806
EcoRV GATATC 1 cut(s) 336
EcoT14I CCWWGG 4 cut(s) 71, 773, 864, 1466
ErhI CCWWGG 4 cut(s) 71, 773, 864, 1466
Esp3I CGTCTC 1 cut(s) 74
FaeI CATG 9 cut(s) 350, 602, 777, 868, 1093, 1228, 1381, 1420, 1465
FalI AAGNNNNNCTT 4 cut(s) 685, 717, 741, 773
FaqI GGGAC 6 cut(s) 191, 278, 605, 819, 1130, 1322
FatI CATG 9 cut(s) 346, 598, 773, 864, 1089, 1224, 1377, 1416, 1461
FauI CCCGC 2 cut(s) 148, 180
FbaI TGATCA 2 cut(s) 343, 1248
FblI GTMKAC 1 cut(s) 875
Fnu4HI GCNGC 4 cut(s) 894, 920, 1158, 1191
FokI GGATG 5 cut(s) 3, 517, 966, 1157, 1359
Fsp4HI GCNGC 4 cut(s) 894, 920, 1158, 1191
FspBI CTAG 6 cut(s) 92, 419, 467, 1016, 1037, 1314
GlaI GCGC 1 cut(s) 186
GluI GCNGC 4 cut(s) 894, 920, 1158, 1191
GsuI CTGGAG 2 cut(s) 782, 900
HaeIII GGCC 3 cut(s) 76, 828, 1182
HapII CCGG 2 cut(s) 479, 1254
HgaI GACGC 1 cut(s) 1319
HhaI GCGC 1 cut(s) 187
Hin1II CATG 9 cut(s) 350, 602, 777, 868, 1093, 1228, 1381, 1420, 1465
Hin6I GCGC 1 cut(s) 185
HinP1I GCGC 1 cut(s) 185
HincII GTYRAC 1 cut(s) 1044
HindII GTYRAC 1 cut(s) 1044
HinfI GANTC 5 cut(s) 59, 317, 872, 1275, 1545
HpaI GTTAAC 1 cut(s) 1044
HpaII CCGG 2 cut(s) 479, 1254
HphI GGTGA 3 cut(s) 1243, 1374, 1508
Hpy166II GTNNAC 4 cut(s) 876, 1044, 1218, 1333
Hpy188I TCNGA 7 cut(s) 172, 488, 642, 687, 1121, 1274, 1493
Hpy188III TCNNGA 9 cut(s) 38, 347, 502, 532, 544, 900, 1090, 1147, 1363
Hpy8I GTNNAC 4 cut(s) 876, 1044, 1218, 1333
Hpy99I CGWCG 1 cut(s) 1065
HpyCH4III ACNGT 3 cut(s) 85, 1012, 1393
HpyCH4IV ACGT 1 cut(s) 1370
HpyCH4V TGCA 7 cut(s) 54, 328, 540, 1082, 1165, 1170, 1409
HpyF10VI GCNNNNNNNGC 3 cut(s) 698, 890, 1130
HpyF3I CTNAG 2 cut(s) 525, 1299
HpySE526I ACGT 1 cut(s) 1370
Hsp92II CATG 9 cut(s) 350, 602, 777, 868, 1093, 1228, 1381, 1420, 1465
HspAI GCGC 1 cut(s) 185
Ksp22I TGATCA 2 cut(s) 343, 1248
KspAI GTTAAC 1 cut(s) 1044
Kzo9I GATC 5 cut(s) 343, 648, 669, 1248, 1442
LmnI GCTCC 3 cut(s) 775, 881, 1121
Lsp1109I GCAGC 2 cut(s) 1169, 1177
LweI GCATC 6 cut(s) 63, 407, 549, 549, 1142, 1179
MaeI CTAG 6 cut(s) 92, 419, 467, 1016, 1037, 1314
MaeII ACGT 1 cut(s) 1370
MaeIII GTNAC 3 cut(s) 87, 655, 1380
MalI GATC 5 cut(s) 345, 650, 671, 1250, 1444
MboI GATC 5 cut(s) 343, 648, 669, 1248, 1442
MboII GAAGA 8 cut(s) 224, 312, 448, 1168, 1202, 1285, 1523, 1540
MfeI CAATTG 1 cut(s) 660
MflI RGATCY 1 cut(s) 669
MluCI AATT 4 cut(s) 660, 681, 1115, 1289
MlyI GAGTC 3 cut(s) 53, 311, 881
MmeI TCCRAC 2 cut(s) 250, 466
MroXI GAANNNNTTC 2 cut(s) 33, 636
MseI TTAA 4 cut(s) 612, 780, 1043, 1533
MslI CAYNNNNRTG 2 cut(s) 113, 1223
MspI CCGG 2 cut(s) 479, 1254
MunI CAATTG 1 cut(s) 660
Mva1269I GAATGC 2 cut(s) 95, 1358
MvnI CGCG 1 cut(s) 187
MwoI GCNNNNNNNGC 3 cut(s) 698, 890, 1130
NcoI CCATGG 2 cut(s) 773, 864
NdeII GATC 5 cut(s) 343, 648, 669, 1248, 1442
NlaIII CATG 9 cut(s) 350, 602, 777, 868, 1093, 1228, 1381, 1420, 1465
NlaIV GGNNCC 2 cut(s) 477, 807
NmuCI GTSAC 1 cut(s) 1380
NspI RCATGY 2 cut(s) 602, 1465
PaeI GCATGC 1 cut(s) 1465
PagI TCATGA 2 cut(s) 346, 1089
PciI ACATGT 1 cut(s) 598
PctI GAATGC 2 cut(s) 95, 1358
PdmI GAANNNNTTC 2 cut(s) 33, 636
PfeI GAWTC 2 cut(s) 1275, 1545
PinAI ACCGGT 1 cut(s) 478
PkrI GCNGC 4 cut(s) 895, 921, 1159, 1192
PleI GAGTC 3 cut(s) 53, 311, 880
PpsI GAGTC 3 cut(s) 53, 311, 880
PpuMI RGGWCCY 1 cut(s) 806
PscI ACATGT 1 cut(s) 598
Psp5II RGGWCCY 1 cut(s) 806
PspN4I GGNNCC 2 cut(s) 477, 807
PspPI GGNCC 2 cut(s) 75, 806
PspPPI RGGWCCY 1 cut(s) 806
PstI CTGCAG 1 cut(s) 1084
PsuI RGATCY 1 cut(s) 669
RsaI GTAC 2 cut(s) 250, 1304
RsaNI GTAC 2 cut(s) 249, 1303
RseI CAYNNNNRTG 2 cut(s) 113, 1223
SaqAI TTAA 4 cut(s) 612, 780, 1043, 1533
SatI GCNGC 4 cut(s) 894, 920, 1158, 1191
Sau3AI GATC 5 cut(s) 343, 648, 669, 1248, 1442
Sau96I GGNCC 2 cut(s) 75, 806
ScaI AGTACT 1 cut(s) 1304
SchI GAGTC 3 cut(s) 53, 311, 881
SfaNI GCATC 6 cut(s) 63, 407, 549, 549, 1142, 1179
SfcI CTRYAG 2 cut(s) 909, 1080
SinI GGWCC 1 cut(s) 806
SmiMI CAYNNNNRTG 2 cut(s) 113, 1223
SmlI CTYRAG 1 cut(s) 448
SmoI CTYRAG 1 cut(s) 448
SphI GCATGC 1 cut(s) 1465
Sse9I AATT 4 cut(s) 660, 681, 1115, 1289
SsiI CCGC 8 cut(s) 5, 141, 187, 690, 851, 893, 920, 1193
SspI AATATT 1 cut(s) 50
SspMI CTAG 6 cut(s) 92, 419, 467, 1016, 1037, 1314
StyI CCWWGG 4 cut(s) 71, 773, 864, 1466
TaaI ACNGT 3 cut(s) 85, 1012, 1393
TaiI ACGT 1 cut(s) 1373
TaqI TCGA 5 cut(s) 57, 543, 739, 870, 1136
TasI AATT 4 cut(s) 660, 681, 1115, 1289
TatI WGTACW 1 cut(s) 1302
TauI GCSGC 2 cut(s) 896, 922
TfiI GAWTC 2 cut(s) 1275, 1545
Tru1I TTAA 4 cut(s) 612, 780, 1043, 1533
Tru9I TTAA 4 cut(s) 612, 780, 1043, 1533
TscAI CASTG 2 cut(s) 806, 1172
TseFI GTSAC 1 cut(s) 1380
TseI GCWGC 2 cut(s) 1157, 1190
Tsp45I GTSAC 1 cut(s) 1380
TspDTI ATGAA 6 cut(s) 350, 1078, 1241, 1366, 1405, 1524
TspGWI ACGGA 1 cut(s) 1338
TspRI CASTG 2 cut(s) 806, 1172
VpaK11BI GGWCC 1 cut(s) 806
XapI RAATTY 1 cut(s) 1115
XceI RCATGY 2 cut(s) 602, 1465
XmiI GTMKAC 1 cut(s) 875
XmnI GAANNNNTTC 2 cut(s) 33, 636
XspI CTAG 6 cut(s) 92, 419, 467, 1016, 1037, 1314
ZrmI AGTACT 1 cut(s) 1304
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.