Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0004561

Physical Location & Seq

Genomic Coordinates Forward (+)

2777122 .. 2780762

Gene Structure 3641 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g03760.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1200 bp

ATGGCTGACATTACCCACCCTCCCATGGATCAGCTCCAAGACCTTGAGTACTGCATAGACTCCAACCCTCCTTGGGCTGAAACCATAGTTCTAGCATTTCAAAACTACATCATGATGCTTGGTACGAGTGTGATGATTCCTTCGGCGCTGGTCCCTGCAATGGGAGGAAGTGATGGTGACAAAGCACGAGTCATACAAACGCTACTCTTTGTAGCTGGAATTAACACCCTTCTCCAAGCGCTTTTCGGAACCAGGTTGCCTGCGGTAGTTGGGGGGTCCTTTTCTTATGTCATTCCCATAGCTTATATCGTGAGCGACCACAAATTGCAACGGATTGCTGAACCTCATGAAAGATTTATACAAACAATGCGTGCTATCCAAGGAGCTCTAATTGTAGCCTCCAGCATACAAATCATTCTGGGTTACAGCCAAGTTTGGGGTCTTTTCTCAAGGTTTTTCAGTCCACTTGGCATGGCACCTGTAGTTGGATTGGTTGGCTTGGGATTGTTTGAACGGGGTTTTCCTGCGTTGGGAAATTGTGTGGAAATTGGAATTCCGATGCTGTTGTTGGTCATTGGGTTGTCTCAATATCTGAAGCATGTGAGACCATTTAGAGATGTCCCTATTTTTGAACGGTTTCCAGTATTGTTTTGTGTCGCTATCATTTGGATCTATTCCCTTATCTTAACTGCCGGTGGGGCTTACCGTGACAAGCCTGTTAGAACCCAAATCAGCTGCCGCACAGACAGGGAAAATCTCATATCTACTGCCCCATGGTTCAAGTTCCCGTATCCTCTGCAGTGGGGTCCTCCTACATTTTCAGCAGGTCACTCATTTGCAATGATGTCTGCAGTTCTTGTTTCAATGGTTGAGTCAACTGCTGCATACAAGGCAGCATCAAGATTGGCAATTGCCACTCCTCCTCCTGCTTATGTATTGAGCCGGGGAATTGGCTGGCAGGGCATCGGTATTTTGCTTGATGGACTTTTTGGTACAGGCACTGGTTCTACTGTTTCTGTGGAAAATGTCGGACTTCTTGGACTAACCCGAGTTGGAAGCCGTAGAGTTGTTCAAATTTCTGCTGGATTCATGATATTCTTCTCAACCTTAGGTAAATTTGGGGCTGTATTTGCATCGATACCCTTCCCGATATATGCAGCTTTATATTGTGTCGTCTTCGGCCTTGTGGGTATGTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005911 GO:0009506 GO:0030054 GO:0055044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Xan_ur_permease

Protein Analysis

400

Amino Acids

43.2

Weight (kDa)

8.95

Isoelectric Point (pI)

29.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004561)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G05760
fragaria_vesca	FvH4_6g42410 FvH4_6g42410 FvH4_6g42410 FvH4_6g42410 FvH4_6g42410 FvH4_6g42410 FvH4_6g42410 FvH4_6g42410 FvH4_6g42410 FvH4_6g42410 FvH4_6g42410 FvH4_6g42410
malus_domestica	MD09G1113400.v1.1
prunus_persica	Prupe.3G211100_v2.0.a1 Prupe.3G211100_v2.0.a1 Prupe.3G211100_v2.0.a1 Prupe.3G211100_v2.0.a1
pyrus_communis	pycom09g03760
rosa_chinensis	RchiOBHm_Chr2g0158301
rosa_laevigata	RLG00000021074
rosa_multiflora	Rmu_sc0000280.1_g000015
rosa_roxburghii	Rroxscaffold_2G00091510
rosa_rugosa	Rorug02G0466900 Rorug02G0467000 Rorug02G0467100
rosa_samantha	Rh2AG533000 Rh2BG546800 Rh2CG516900 Rh2DG555800
rosa_wichuraiana	Rw2G044130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	815
AccB1I	GGYRCC	1 cut(s)	475
AciI	CCGC	2 cut(s)	263, 739
AclWI	GGATC	2 cut(s)	36, 677
AcsI	RAATTY	3 cut(s)	552, 1074, 1115
AcuI	CTGAAG	1 cut(s)	614
AfaI	GTAC	3 cut(s)	50, 124, 994
AfeI	AGCGCT	1 cut(s)	240
AfiI	CCNNNNNNNGG	7 cut(s)	25, 73, 160, 161, 436, 485, 530
AgsI	TTSAA	6 cut(s)	101, 512, 632, 781, 864, 1073
AjnI	CCWGG	1 cut(s)	251
AluBI	AGCT	6 cut(s)	34, 215, 302, 386, 735, 1160
AluI	AGCT	6 cut(s)	34, 215, 302, 386, 735, 1160
Alw21I	GWGCWC	1 cut(s)	388
Alw26I	GTCTC	2 cut(s)	588, 598
AlwI	GGATC	2 cut(s)	36, 677
AlwNI	CAGNNNCTG	1 cut(s)	1001
Ama87I	CYCGRG	1 cut(s)	1047
Aor51HI	AGCGCT	1 cut(s)	240
AoxI	GGCC	1 cut(s)	1180
ApeKI	GCWGC	4 cut(s)	735, 881, 893, 1157
ApoI	RAATTY	3 cut(s)	552, 1074, 1115
ArsI	GACNNNNNNTTYG	2 cut(s)	174, 206
Asp700I	GAANNNNTTC	1 cut(s)	636
AspLEI	GCGC	2 cut(s)	148, 241
AspS9I	GGNCC	3 cut(s)	151, 276, 806
AsuC2I	CCSGG	1 cut(s)	944
AsuHPI	GGTGA	1 cut(s)	188
AvaI	CYCGRG	1 cut(s)	1047
AvaII	GGWCC	3 cut(s)	151, 276, 806
AxyI	CCTNAGG	1 cut(s)	1108
BaeI	ACNNNNGTAYC	2 cut(s)	114, 147
BanI	GGYRCC	1 cut(s)	475
BanII	GRGCYC	1 cut(s)	388
BauI	CACGAG	1 cut(s)	186
BbsI	GAAGAC	1 cut(s)	1168
Bbv12I	GWGCWC	1 cut(s)	388
BbvI	GCAGC	4 cut(s)	722, 868, 905, 1169
BccI	CCATC	2 cut(s)	167, 974
BceAI	ACGGC	1 cut(s)	1044
BciT130I	CCWGG	1 cut(s)	253
BciVI	GTATCC	1 cut(s)	801
BcnI	CCSGG	1 cut(s)	944
BcoDI	GTCTC	2 cut(s)	588, 598
BfaI	CTAG	1 cut(s)	92
BfmI	CTRYAG	3 cut(s)	480, 797, 849
BfoI	RGCGCY	2 cut(s)	149, 242
BfuAI	ACCTGC	1 cut(s)	815
BfuI	GTATCC	1 cut(s)	801
BglI	GCCNNNNNGGC	1 cut(s)	698
BisI	GCNGC	5 cut(s)	736, 739, 882, 894, 1158
BlsI	GCNGC	5 cut(s)	737, 740, 883, 895, 1159
BmcAI	AGTACT	1 cut(s)	50
Bme1390I	CCNGG	2 cut(s)	253, 944
Bme18I	GGWCC	3 cut(s)	151, 276, 806
BmeT110I	CYCGRG	1 cut(s)	1047
BmgT120I	GGNCC	3 cut(s)	151, 276, 806
BmiI	GGNNCC	5 cut(s)	153, 250, 277, 477, 807
BmrFI	CCNGG	2 cut(s)	253, 944
BmsI	GCATC	5 cut(s)	105, 549, 905, 972, 1142
BpiI	GAAGAC	1 cut(s)	1168
BpmI	CTGGAG	1 cut(s)	385
BpuEI	CTTGAG	2 cut(s)	65, 433
BpuMI	CCSGG	1 cut(s)	944
Bsa29I	ATCGAT	1 cut(s)	1136
BsaI	GGTCTC	1 cut(s)	598
BsaJI	CCNNGG	5 cut(s)	24, 71, 379, 773, 943
BsaXI	ACNNNNNCTCC	3 cut(s)	34, 907, 937
Bsc4I	CCNNNNNNNGG	7 cut(s)	25, 73, 160, 161, 436, 485, 530
Bse118I	RCCGGY	1 cut(s)	692
Bse1I	ACTGG	2 cut(s)	641, 1006
Bse21I	CCTNAGG	1 cut(s)	1108
Bse3DI	GCAATG	2 cut(s)	165, 846
BseBI	CCWGG	1 cut(s)	253
BseCI	ATCGAT	1 cut(s)	1136
BseDI	CCNNGG	5 cut(s)	24, 71, 379, 773, 943
BseLI	CCNNNNNNNGG	7 cut(s)	25, 73, 160, 161, 436, 485, 530
BseMI	GCAATG	2 cut(s)	165, 846
BseNI	ACTGG	2 cut(s)	641, 1006
BseRI	GAGGAG	2 cut(s)	909, 912
BseXI	GCAGC	4 cut(s)	722, 868, 905, 1169
BshFI	GGCC	1 cut(s)	1182
BshNI	GGYRCC	1 cut(s)	475
BshVI	ATCGAT	1 cut(s)	1136
BsiHKAI	GWGCWC	1 cut(s)	388
BsiHKCI	CYCGRG	1 cut(s)	1047
BsiSI	CCGG	2 cut(s)	693, 943
BslFI	GGGAC	2 cut(s)	137, 605
BslI	CCNNNNNNNGG	7 cut(s)	25, 73, 160, 161, 436, 485, 530
BsmAI	GTCTC	2 cut(s)	588, 598
BsmFI	GGGAC	2 cut(s)	137, 605
BsnI	GGCC	1 cut(s)	1182
Bso31I	GGTCTC	1 cut(s)	598
BsoBI	CYCGRG	1 cut(s)	1047
Bsp1286I	GDGCHC	1 cut(s)	388
Bsp143I	GATC	2 cut(s)	28, 669
Bsp19I	CCATGG	2 cut(s)	24, 773
BspACI	CCGC	2 cut(s)	263, 739
BspANI	GGCC	1 cut(s)	1182
BspDI	ATCGAT	1 cut(s)	1136
BspHI	TCATGA	4 cut(s)	111, 346, 1089, 1196
BspLI	GGNNCC	5 cut(s)	153, 250, 277, 477, 807
BspMAI	CTGCAG	2 cut(s)	801, 853
BspMI	ACCTGC	1 cut(s)	815
BspPI	GGATC	2 cut(s)	36, 677
BspT107I	GGYRCC	1 cut(s)	475
BspTNI	GGTCTC	1 cut(s)	598
BsrDI	GCAATG	2 cut(s)	165, 846
BsrFI	RCCGGY	1 cut(s)	692
BsrI	ACTGG	2 cut(s)	641, 1006
BssAI	RCCGGY	1 cut(s)	692
BssECI	CCNNGG	5 cut(s)	24, 71, 379, 773, 943
BssMI	GATC	2 cut(s)	28, 669
BssSI	CACGAG	1 cut(s)	186
BssT1I	CCWWGG	4 cut(s)	24, 71, 379, 773
Bst2BI	CACGAG	1 cut(s)	186
Bst2UI	CCWGG	1 cut(s)	253
Bst4CI	ACNGT	3 cut(s)	636, 707, 1012
BstC8I	GCNNGC	3 cut(s)	261, 372, 956
BstDEI	CTNAG	1 cut(s)	1108
BstDSI	CCRYGG	2 cut(s)	24, 773
BstH2I	RGCGCY	2 cut(s)	149, 242
BstHHI	GCGC	2 cut(s)	148, 241
BstKTI	GATC	2 cut(s)	31, 672
BstMAI	GTCTC	2 cut(s)	588, 598
BstMBI	GATC	2 cut(s)	28, 669
BstMWI	GCNNNNNNNGC	4 cut(s)	698, 890, 960, 1130
BstNI	CCWGG	1 cut(s)	253
BstNSI	RCATGY	1 cut(s)	602
BstSCI	CCNGG	2 cut(s)	251, 942
BstSFI	CTRYAG	3 cut(s)	480, 797, 849
BstV1I	GCAGC	4 cut(s)	722, 868, 905, 1169
BstV2I	GAAGAC	1 cut(s)	1168
BstX2I	RGATCY	1 cut(s)	669
BstYI	RGATCY	1 cut(s)	669
Bsu15I	ATCGAT	1 cut(s)	1136
Bsu36I	CCTNAGG	1 cut(s)	1108
BsuI	GTATCC	1 cut(s)	801
BsuRI	GGCC	1 cut(s)	1182
BsuTUI	ATCGAT	1 cut(s)	1136
BtgI	CCRYGG	2 cut(s)	24, 773
BtsI	GCAGTG	1 cut(s)	806
BtsIMutI	CAGTG	2 cut(s)	806, 999
BveI	ACCTGC	1 cut(s)	815
Cac8I	GCNNGC	3 cut(s)	261, 372, 956
CaiI	CAGNNNCTG	1 cut(s)	1001
CciI	TCATGA	4 cut(s)	111, 346, 1089, 1196
CfoI	GCGC	2 cut(s)	148, 241
Cfr10I	RCCGGY	1 cut(s)	692
Cfr13I	GGNCC	3 cut(s)	151, 276, 806
ClaI	ATCGAT	1 cut(s)	1136
CsiI	ACCWGGT	1 cut(s)	251
Csp6I	GTAC	3 cut(s)	49, 123, 993
CviAII	CATG	8 cut(s)	25, 112, 347, 472, 599, 774, 1090, 1197
CviQI	GTAC	3 cut(s)	49, 123, 993
DdeI	CTNAG	1 cut(s)	1108
DpnI	GATC	2 cut(s)	30, 671
DpnII	GATC	2 cut(s)	28, 669
Ecl136II	GAGCTC	1 cut(s)	386
Eco130I	CCWWGG	4 cut(s)	24, 71, 379, 773
Eco24I	GRGCYC	1 cut(s)	388
Eco31I	GGTCTC	1 cut(s)	598
Eco47I	GGWCC	3 cut(s)	151, 276, 806
Eco47III	AGCGCT	1 cut(s)	240
Eco53kI	GAGCTC	1 cut(s)	386
Eco57I	CTGAAG	1 cut(s)	614
Eco81I	CCTNAGG	1 cut(s)	1108
Eco88I	CYCGRG	1 cut(s)	1047
EcoICRI	GAGCTC	1 cut(s)	386
EcoO109I	RGGNCCY	2 cut(s)	276, 806
EcoRI	GAATTC	1 cut(s)	552
EcoRII	CCWGG	1 cut(s)	251
EcoT14I	CCWWGG	4 cut(s)	24, 71, 379, 773
EcoT38I	GRGCYC	1 cut(s)	388
ErhI	CCWWGG	4 cut(s)	24, 71, 379, 773
FaeI	CATG	8 cut(s)	28, 115, 350, 475, 602, 777, 1093, 1200
FaqI	GGGAC	2 cut(s)	137, 605
FatI	CATG	8 cut(s)	24, 111, 346, 471, 598, 773, 1089, 1196
Fnu4HI	GCNGC	5 cut(s)	736, 739, 882, 894, 1158
FriOI	GRGCYC	1 cut(s)	388
Fsp4HI	GCNGC	5 cut(s)	736, 739, 882, 894, 1158
FspBI	CTAG	1 cut(s)	92
GlaI	GCGC	2 cut(s)	147, 240
GluI	GCNGC	5 cut(s)	736, 739, 882, 894, 1158
GsuI	CTGGAG	1 cut(s)	385
HaeII	RGCGCY	2 cut(s)	149, 242
HaeIII	GGCC	1 cut(s)	1182
HapII	CCGG	2 cut(s)	693, 943
HhaI	GCGC	2 cut(s)	148, 241
Hin1II	CATG	8 cut(s)	28, 115, 350, 475, 602, 777, 1093, 1200
Hin6I	GCGC	2 cut(s)	146, 239
HinP1I	GCGC	2 cut(s)	146, 239
HincII	GTYRAC	1 cut(s)	876
HindII	GTYRAC	1 cut(s)	876
HinfI	GANTC	5 cut(s)	59, 136, 189, 872, 1086
HpaII	CCGG	2 cut(s)	693, 943
HphI	GGTGA	1 cut(s)	188
Hpy166II	GTNNAC	2 cut(s)	464, 876
Hpy188I	TCNGA	4 cut(s)	248, 558, 594, 1031
Hpy188III	TCNNGA	7 cut(s)	112, 310, 347, 900, 1090, 1147, 1197
Hpy8I	GTNNAC	2 cut(s)	464, 876
HpyAV	CCTTC	3 cut(s)	150, 239, 1153
HpyCH4III	ACNGT	3 cut(s)	636, 707, 1012
HpyCH4V	TGCA	9 cut(s)	54, 158, 328, 799, 839, 851, 884, 1133, 1157
HpyF10VI	GCNNNNNNNGC	4 cut(s)	698, 890, 960, 1130
HpyF3I	CTNAG	1 cut(s)	1108
Hsp92II	CATG	8 cut(s)	28, 115, 350, 475, 602, 777, 1093, 1200
HspAI	GCGC	2 cut(s)	146, 239
Kzo9I	GATC	2 cut(s)	28, 669
LmnI	GCTCC	2 cut(s)	39, 383
Lsp1109I	GCAGC	4 cut(s)	722, 868, 905, 1169
LweI	GCATC	5 cut(s)	105, 549, 905, 972, 1142
MabI	ACCWGGT	1 cut(s)	251
MaeI	CTAG	1 cut(s)	92
MaeIII	GTNAC	4 cut(s)	176, 422, 707, 827
MalI	GATC	2 cut(s)	30, 671
MboI	GATC	2 cut(s)	28, 669
MboII	GAAGA	2 cut(s)	1090, 1168
MfeI	CAATTG	1 cut(s)	909
MflI	RGATCY	1 cut(s)	669
MhlI	GDGCHC	1 cut(s)	388
MlyI	GAGTC	3 cut(s)	53, 198, 881
MmeI	TCCRAC	4 cut(s)	87, 466, 1009, 1033
MnlI	CCTC	9 cut(s)	30, 78, 158, 354, 409, 804, 819, 930, 933
MroXI	GAANNNNTTC	1 cut(s)	636
MseI	TTAA	2 cut(s)	222, 686
MslI	CAYNNNNRTG	1 cut(s)	113
MspA1I	CMGCKG	1 cut(s)	735
MspI	CCGG	2 cut(s)	693, 943
MspR9I	CCNGG	2 cut(s)	253, 944
MunI	CAATTG	1 cut(s)	909
MvaI	CCWGG	1 cut(s)	253
MwoI	GCNNNNNNNGC	4 cut(s)	698, 890, 960, 1130
NciI	CCSGG	1 cut(s)	944
NcoI	CCATGG	2 cut(s)	24, 773
NdeII	GATC	2 cut(s)	28, 669
NlaIII	CATG	8 cut(s)	28, 115, 350, 475, 602, 777, 1093, 1200
NlaIV	GGNNCC	5 cut(s)	153, 250, 277, 477, 807
NmuCI	GTSAC	3 cut(s)	176, 707, 827
NspI	RCATGY	1 cut(s)	602
PagI	TCATGA	4 cut(s)	111, 346, 1089, 1196
PdmI	GAANNNNTTC	1 cut(s)	636
PfeI	GAWTC	2 cut(s)	136, 1086
PkrI	GCNGC	5 cut(s)	737, 740, 883, 895, 1159
PleI	GAGTC	3 cut(s)	53, 197, 880
PpsI	GAGTC	3 cut(s)	53, 197, 880
PpuMI	RGGWCCY	2 cut(s)	276, 806
Psp124BI	GAGCTC	1 cut(s)	388
Psp5II	RGGWCCY	2 cut(s)	276, 806
Psp6I	CCWGG	1 cut(s)	251
PspGI	CCWGG	1 cut(s)	251
PspN4I	GGNNCC	5 cut(s)	153, 250, 277, 477, 807
PspPI	GGNCC	3 cut(s)	151, 276, 806
PspPPI	RGGWCCY	2 cut(s)	276, 806
PstI	CTGCAG	2 cut(s)	801, 853
PstNI	CAGNNNCTG	1 cut(s)	1001
PsuI	RGATCY	1 cut(s)	669
PvuII	CAGCTG	1 cut(s)	735
RsaI	GTAC	3 cut(s)	50, 124, 994
RsaNI	GTAC	3 cut(s)	49, 123, 993
RseI	CAYNNNNRTG	1 cut(s)	113
SacI	GAGCTC	1 cut(s)	388
SaqAI	TTAA	2 cut(s)	222, 686
SatI	GCNGC	5 cut(s)	736, 739, 882, 894, 1158
Sau3AI	GATC	2 cut(s)	28, 669
Sau96I	GGNCC	3 cut(s)	151, 276, 806
ScaI	AGTACT	1 cut(s)	50
SchI	GAGTC	3 cut(s)	53, 198, 881
ScrFI	CCNGG	2 cut(s)	253, 944
SduI	GDGCHC	1 cut(s)	388
SexAI	ACCWGGT	1 cut(s)	251
SfaNI	GCATC	5 cut(s)	105, 549, 905, 972, 1142
SfcI	CTRYAG	3 cut(s)	480, 797, 849
SinI	GGWCC	3 cut(s)	151, 276, 806
SmiMI	CAYNNNNRTG	1 cut(s)	113
SmlI	CTYRAG	2 cut(s)	44, 448
SmoI	CTYRAG	2 cut(s)	44, 448
SsiI	CCGC	2 cut(s)	263, 739
SspMI	CTAG	1 cut(s)	92
SstI	GAGCTC	1 cut(s)	388
StyD4I	CCNGG	2 cut(s)	251, 942
StyI	CCWWGG	4 cut(s)	24, 71, 379, 773
TaaI	ACNGT	3 cut(s)	636, 707, 1012
TaqI	TCGA	1 cut(s)	1136
TatI	WGTACW	1 cut(s)	48
TauI	GCSGC	1 cut(s)	741
TfiI	GAWTC	2 cut(s)	136, 1086
Tru1I	TTAA	2 cut(s)	222, 686
Tru9I	TTAA	2 cut(s)	222, 686
TscAI	CASTG	2 cut(s)	806, 1006
TseFI	GTSAC	3 cut(s)	176, 707, 827
TseI	GCWGC	4 cut(s)	735, 881, 893, 1157
Tsp45I	GTSAC	3 cut(s)	176, 707, 827
TspDTI	ATGAA	2 cut(s)	363, 1078
TspGWI	ACGGA	1 cut(s)	346
TspRI	CASTG	2 cut(s)	806, 1006
VpaK11BI	GGWCC	3 cut(s)	151, 276, 806
XapI	RAATTY	3 cut(s)	552, 1074, 1115
XceI	RCATGY	1 cut(s)	602
XmnI	GAANNNNTTC	1 cut(s)	636
XspI	CTAG	1 cut(s)	92
ZrmI	AGTACT	1 cut(s)	50

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.