FvH4_6g42410

nucleobase-ascorbate transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0004561
Physical Location & Seq
Reverse (-)
33068552 .. 33074266
5715 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g42410.t6

Sequence Viewer

Length: 1287 bp
ATGCTTGGCACAAGTGTAATGGTCCCTTCATTACTTGTCCCTGCAATGGGTGGAAGTGATGGTGATAAAGCACGAGTAATACAGACTCTCCTCTTCGTTGCTGGAATTAAGACACTTCTCCAAGCACTTTTTGGAACCAGGCTACCCGCTGTAGTTGGAGGCTCCTTTGCTTATGTTGTTCCAATAGCCTACATTATAAACGACTCCAAGTTCCATCGGATTACTGATAATCATGAAAGATTTTTACAAACAATGCGTGCTATCCAAGGAGCTCTAATTGTAGCTTCAAGCATACAAATCATTCTGGGTTACAGCCAAGTTTGGGGGCTCTTCTCACGGTTTTTCAGTCCTCTTGGCATGGCACCTGTAGTTGGATTAGTTGGTTTAGGATTATTTGAACGTGGATTTCCAGAGCTGGGGAAGTGTGTGGAAATTGGAATTCCAATGCTGTTGTTGGTCATCGGGTTTTCTCAATATCTGAAGCATGTGAGACCACTTAGAGATGTCCCCATCTTTGAACGGTTTCCAGTATTGATTTGTATCTCAATCATTTGGATCTATTCCCTAATCTTAACTGCTAGTGGGGCTTACCAAGACAAACCCGATAGAACACAAGTCAGCTGTCGTACCGATAGAGCAAATCTCATATCAACTGCCCCATGGTTCAAGTTTCCATATCCACTGCAGTGGGGTCCACCTACATTTTCTGCTGGTCACTCATTTGCAATGATGTCTGCAGTTCTTGTTTCCATGGTTGAGTCAACTGGCGCATACAAGGCTGCATCCAGATTGGCGATTGCCACTCCTCCTCCTGCTTATGTTTTGAGCAGGGGTATAGGCTGGCAGGGAATCGGTGTTCTGCTTGATGGACTTTATGGAACAGGCACTGGTTCAACTGTTTCTGTGGAAAACGTTGGACTCCTTGGACTGACACGAGTTGGAAGTCGTAGAGTTGTTCAAATTTCTGCTGGATTTATGATATTCTTCTCCACCTTAGGTAAATTTGGAGCTGTATTTGCATCCATACCTGCCCCTATATATGCTGCACTATACTGCATTCTCTTCGGACTTGTGGCTTCAGTGGGATTATCATTTCTTCAGTTCACAAATATGAATTCCATGAGAAACCTCATAATTACCGGGCTTTCGCTATTCCTCGGGATATCAGTTCCCCACTTTTTCAGTGAATATTGGAATCCTGCCCATCATGGTCTTGTTCATACCAATGCTGGATGGGTGAGTAATGTTGCCAGCAAACTTATTTATGGAGAATGTGTAGTATTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005911 GO:0009506 GO:0030054 GO:0055044
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Xan_ur_permease

Protein Analysis

429

Amino Acids

46.27

Weight (kDa)

9.53

Isoelectric Point (pI)

26.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Xan_ur_permease PF00860 1 - 308 1.3e-52 Permease family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 197
Acc36I ACCTGC 1 cut(s) 1036
AccB1I GGYRCC 1 cut(s) 361
AciI CCGC 1 cut(s) 147
AclI AACGTT 1 cut(s) 912
AclWI GGATC 1 cut(s) 563
AcsI RAATTY 4 cut(s) 438, 960, 1001, 1114
AcuI CTGAAG 3 cut(s) 500, 1062, 1082
AfaI GTAC 1 cut(s) 628
AfiI CCNNNNNNNGG 5 cut(s) 46, 47, 322, 371, 416
AgsI TTSAA 6 cut(s) 288, 398, 518, 667, 894, 959
AjnI CCWGG 1 cut(s) 137
AleI CACNNNNGTG 1 cut(s) 685
AloI GAACNNNNNNTCC 2 cut(s) 840, 872
AluBI AGCT 5 cut(s) 272, 284, 415, 621, 1010
AluI AGCT 5 cut(s) 272, 284, 415, 621, 1010
Alw21I GWGCWC 1 cut(s) 274
Alw26I GTCTC 1 cut(s) 484
AlwI GGATC 1 cut(s) 563
AlwNI CAGNNNCTG 1 cut(s) 887
Ama87I CYCGRG 1 cut(s) 1157
ApeKI GCWGC 2 cut(s) 779, 1043
ApoI RAATTY 4 cut(s) 438, 960, 1001, 1114
Asp700I GAANNNNTTC 1 cut(s) 522
AspLEI GCGC 1 cut(s) 770
AspS9I GGNCC 2 cut(s) 22, 692
AsuC2I CCSGG 1 cut(s) 1141
AsuHPI GGTGA 2 cut(s) 74, 1249
AvaI CYCGRG 1 cut(s) 1157
AvaII GGWCC 2 cut(s) 22, 692
AxyI CCTNAGG 1 cut(s) 994
BanI GGYRCC 1 cut(s) 361
BanII GRGCYC 2 cut(s) 274, 330
BauI CACGAG 2 cut(s) 72, 933
Bbv12I GWGCWC 1 cut(s) 274
BbvI GCAGC 2 cut(s) 766, 1030
BccI CCATC 6 cut(s) 53, 222, 518, 860, 1212, 1227
BcgI CGANNNNNNTGC 2 cut(s) 1045, 1079
BciT130I CCWGG 1 cut(s) 139
BcnI CCSGG 1 cut(s) 1141
BcoDI GTCTC 1 cut(s) 484
BfaI CTAG 1 cut(s) 579
BfmI CTRYAG 4 cut(s) 150, 366, 683, 735
BfuAI ACCTGC 1 cut(s) 1036
BisI GCNGC 2 cut(s) 780, 1044
BlsI GCNGC 2 cut(s) 781, 1045
Bme1390I CCNGG 2 cut(s) 139, 1141
Bme18I GGWCC 2 cut(s) 22, 692
BmeT110I CYCGRG 1 cut(s) 1157
BmgT120I GGNCC 2 cut(s) 22, 692
BmiI GGNNCC 5 cut(s) 24, 136, 163, 363, 693
BmrFI CCNGG 2 cut(s) 139, 1141
BmsI GCATC 2 cut(s) 791, 1028
BplI GAGNNNNNCTC 2 cut(s) 627, 659
BpuMI CCSGG 1 cut(s) 1141
BsaBI GATNNNNATC 1 cut(s) 539
BsaI GGTCTC 1 cut(s) 484
BsaJI CCNNGG 5 cut(s) 265, 659, 750, 922, 1156
BsaXI ACNNNNNCTCC 5 cut(s) 72, 102, 793, 823, 1260
Bsc4I CCNNNNNNNGG 5 cut(s) 46, 47, 322, 371, 416
Bse1I ACTGG 3 cut(s) 527, 769, 892
Bse21I CCTNAGG 1 cut(s) 994
Bse3DI GCAATG 2 cut(s) 51, 732
Bse8I GATNNNNATC 1 cut(s) 539
BseBI CCWGG 1 cut(s) 139
BseDI CCNNGG 5 cut(s) 265, 659, 750, 922, 1156
BseGI GGATG 3 cut(s) 782, 1019, 1238
BseJI GATNNNNATC 1 cut(s) 539
BseLI CCNNNNNNNGG 5 cut(s) 46, 47, 322, 371, 416
BseMI GCAATG 2 cut(s) 51, 732
BseNI ACTGG 3 cut(s) 527, 769, 892
BseRI GAGGAG 3 cut(s) 80, 795, 798
BseXI GCAGC 2 cut(s) 766, 1030
BseYI CCCAGC 1 cut(s) 415
BsgI GTGCAG 1 cut(s) 1029
BshNI GGYRCC 1 cut(s) 361
BsiHKAI GWGCWC 1 cut(s) 274
BsiHKCI CYCGRG 1 cut(s) 1157
BsiSI CCGG 1 cut(s) 1140
BslFI GGGAC 3 cut(s) 8, 23, 491
BslI CCNNNNNNNGG 5 cut(s) 46, 47, 322, 371, 416
BsmAI GTCTC 1 cut(s) 484
BsmFI GGGAC 3 cut(s) 8, 23, 491
BsmI GAATGC 1 cut(s) 1056
Bso31I GGTCTC 1 cut(s) 484
BsoBI CYCGRG 1 cut(s) 1157
Bsp1286I GDGCHC 2 cut(s) 274, 330
Bsp143I GATC 1 cut(s) 555
Bsp19I CCATGG 2 cut(s) 659, 750
BspACI CCGC 1 cut(s) 147
BspHI TCATGA 1 cut(s) 232
BspLI GGNNCC 5 cut(s) 24, 136, 163, 363, 693
BspMAI CTGCAG 2 cut(s) 687, 739
BspMI ACCTGC 1 cut(s) 1036
BspPI GGATC 1 cut(s) 563
BspQI GCTCTTC 1 cut(s) 335
BspT107I GGYRCC 1 cut(s) 361
BspTNI GGTCTC 1 cut(s) 484
BsrDI GCAATG 2 cut(s) 51, 732
BsrI ACTGG 3 cut(s) 527, 769, 892
BssECI CCNNGG 5 cut(s) 265, 659, 750, 922, 1156
BssMI GATC 1 cut(s) 555
BssSI CACGAG 2 cut(s) 72, 933
BssT1I CCWWGG 4 cut(s) 265, 659, 750, 922
Bst2BI CACGAG 2 cut(s) 72, 933
Bst2UI CCWGG 1 cut(s) 139
Bst4CI ACNGT 3 cut(s) 339, 522, 898
Bst6I CTCTTC 3 cut(s) 98, 335, 1067
BstC8I GCNNGC 3 cut(s) 258, 842, 1252
BstDEI CTNAG 2 cut(s) 497, 994
BstDSI CCRYGG 2 cut(s) 659, 750
BstF5I GGATG 3 cut(s) 782, 1019, 1238
BstHHI GCGC 1 cut(s) 770
BstKTI GATC 1 cut(s) 558
BstMAI GTCTC 1 cut(s) 484
BstMBI GATC 1 cut(s) 555
BstMWI GCNNNNNNNGC 3 cut(s) 584, 776, 1016
BstNI CCWGG 1 cut(s) 139
BstNSI RCATGY 1 cut(s) 488
BstSCI CCNGG 2 cut(s) 137, 1139
BstSFI CTRYAG 4 cut(s) 150, 366, 683, 735
BstV1I GCAGC 2 cut(s) 766, 1030
BstX2I RGATCY 1 cut(s) 555
BstXI CCANNNNNNTGG 1 cut(s) 687
BstYI RGATCY 1 cut(s) 555
Bsu36I CCTNAGG 1 cut(s) 994
BtgI CCRYGG 2 cut(s) 659, 750
BtsCI GGATG 3 cut(s) 782, 1019, 1238
BtsI GCAGTG 2 cut(s) 680, 692
BtsIMutI CAGTG 5 cut(s) 680, 692, 885, 1086, 1189
BveI ACCTGC 1 cut(s) 1036
Cac8I GCNNGC 3 cut(s) 258, 842, 1252
CaiI CAGNNNCTG 1 cut(s) 887
CciI TCATGA 1 cut(s) 232
CfoI GCGC 1 cut(s) 770
Cfr13I GGNCC 2 cut(s) 22, 692
Csp6I GTAC 1 cut(s) 627
CviAII CATG 7 cut(s) 233, 358, 485, 660, 751, 1120, 1208
CviQI GTAC 1 cut(s) 627
DdeI CTNAG 2 cut(s) 497, 994
DpnI GATC 1 cut(s) 557
DpnII GATC 1 cut(s) 555
Eam1104I CTCTTC 3 cut(s) 98, 335, 1067
EarI CTCTTC 3 cut(s) 98, 335, 1067
Ecl136II GAGCTC 1 cut(s) 272
Eco130I CCWWGG 4 cut(s) 265, 659, 750, 922
Eco24I GRGCYC 2 cut(s) 274, 330
Eco31I GGTCTC 1 cut(s) 484
Eco32I GATATC 1 cut(s) 1164
Eco47I GGWCC 2 cut(s) 22, 692
Eco53kI GAGCTC 1 cut(s) 272
Eco57I CTGAAG 3 cut(s) 500, 1062, 1082
Eco81I CCTNAGG 1 cut(s) 994
Eco88I CYCGRG 1 cut(s) 1157
EcoICRI GAGCTC 1 cut(s) 272
EcoRI GAATTC 2 cut(s) 438, 1114
EcoRII CCWGG 1 cut(s) 137
EcoRV GATATC 1 cut(s) 1164
EcoT14I CCWWGG 4 cut(s) 265, 659, 750, 922
EcoT38I GRGCYC 2 cut(s) 274, 330
ErhI CCWWGG 4 cut(s) 265, 659, 750, 922
FaeI CATG 7 cut(s) 236, 361, 488, 663, 754, 1123, 1211
FaqI GGGAC 3 cut(s) 8, 23, 491
FatI CATG 7 cut(s) 232, 357, 484, 659, 750, 1119, 1207
FauI CCCGC 1 cut(s) 154
Fnu4HI GCNGC 2 cut(s) 780, 1044
FokI GGATG 3 cut(s) 769, 1006, 1245
FriOI GRGCYC 2 cut(s) 274, 330
Fsp4HI GCNGC 2 cut(s) 780, 1044
FspBI CTAG 1 cut(s) 579
GlaI GCGC 1 cut(s) 769
GluI GCNGC 2 cut(s) 780, 1044
GsaI CCCAGC 1 cut(s) 419
HapII CCGG 1 cut(s) 1140
HhaI GCGC 1 cut(s) 770
Hin1II CATG 7 cut(s) 236, 361, 488, 663, 754, 1123, 1211
Hin6I GCGC 1 cut(s) 768
HinP1I GCGC 1 cut(s) 768
HincII GTYRAC 1 cut(s) 762
HindII GTYRAC 1 cut(s) 762
HinfI GANTC 6 cut(s) 85, 203, 758, 849, 918, 1195
HpaII CCGG 1 cut(s) 1140
HphI GGTGA 2 cut(s) 74, 1249
Hpy166II GTNNAC 3 cut(s) 695, 762, 1104
Hpy188I TCNGA 3 cut(s) 219, 480, 1067
Hpy188III TCNNGA 4 cut(s) 233, 410, 786, 1159
Hpy8I GTNNAC 3 cut(s) 695, 762, 1104
HpyAV CCTTC 1 cut(s) 36
HpyCH4III ACNGT 3 cut(s) 339, 522, 898
HpyCH4IV ACGT 2 cut(s) 400, 912
HpyCH4V TGCA 8 cut(s) 44, 685, 725, 737, 782, 1019, 1046, 1056
HpyF10VI GCNNNNNNNGC 3 cut(s) 584, 776, 1016
HpyF3I CTNAG 2 cut(s) 497, 994
HpySE526I ACGT 2 cut(s) 400, 912
Hsp92II CATG 7 cut(s) 236, 361, 488, 663, 754, 1123, 1211
HspAI GCGC 1 cut(s) 768
Kzo9I GATC 1 cut(s) 555
LguI GCTCTTC 1 cut(s) 335
LmnI GCTCC 3 cut(s) 167, 269, 1007
Lsp1109I GCAGC 2 cut(s) 766, 1030
LweI GCATC 2 cut(s) 791, 1028
MaeI CTAG 1 cut(s) 579
MaeII ACGT 2 cut(s) 400, 912
MaeIII GTNAC 2 cut(s) 308, 713
MalI GATC 1 cut(s) 557
MboI GATC 1 cut(s) 555
MboII GAAGA 5 cut(s) 85, 322, 976, 1054, 1088
MflI RGATCY 1 cut(s) 555
MhlI GDGCHC 2 cut(s) 274, 330
MluCI AATT 8 cut(s) 105, 276, 432, 438, 960, 1001, 1114, 1134
MlyI GAGTC 4 cut(s) 79, 197, 767, 912
MmeI TCCRAC 4 cut(s) 136, 352, 895, 919
MnlI CCTC 7 cut(s) 101, 152, 360, 816, 819, 1139, 1166
MroXI GAANNNNTTC 1 cut(s) 522
MseI TTAA 3 cut(s) 108, 572, 1285
MslI CAYNNNNRTG 3 cut(s) 685, 1109, 1224
MspA1I CMGCKG 2 cut(s) 149, 621
MspI CCGG 1 cut(s) 1140
MspR9I CCNGG 2 cut(s) 139, 1141
Mva1269I GAATGC 1 cut(s) 1056
MvaI CCWGG 1 cut(s) 139
MwoI GCNNNNNNNGC 3 cut(s) 584, 776, 1016
NciI CCSGG 1 cut(s) 1141
NcoI CCATGG 2 cut(s) 659, 750
NdeII GATC 1 cut(s) 555
NlaIII CATG 7 cut(s) 236, 361, 488, 663, 754, 1123, 1211
NlaIV GGNNCC 5 cut(s) 24, 136, 163, 363, 693
NmuCI GTSAC 1 cut(s) 713
NspI RCATGY 1 cut(s) 488
OliI CACNNNNGTG 1 cut(s) 685
PagI TCATGA 1 cut(s) 232
PciSI GCTCTTC 1 cut(s) 335
PctI GAATGC 1 cut(s) 1056
PdmI GAANNNNTTC 1 cut(s) 522
PfeI GAWTC 2 cut(s) 849, 1195
PkrI GCNGC 2 cut(s) 781, 1045
PleI GAGTC 4 cut(s) 79, 197, 766, 912
PpsI GAGTC 4 cut(s) 79, 197, 766, 912
PsiI TTATAA 1 cut(s) 197
Psp124BI GAGCTC 1 cut(s) 274
Psp1406I AACGTT 1 cut(s) 912
Psp6I CCWGG 1 cut(s) 137
PspFI CCCAGC 1 cut(s) 415
PspGI CCWGG 1 cut(s) 137
PspN4I GGNNCC 5 cut(s) 24, 136, 163, 363, 693
PspPI GGNCC 2 cut(s) 22, 692
PstI CTGCAG 2 cut(s) 687, 739
PstNI CAGNNNCTG 1 cut(s) 887
PsuI RGATCY 1 cut(s) 555
PvuII CAGCTG 1 cut(s) 621
RsaI GTAC 1 cut(s) 628
RsaNI GTAC 1 cut(s) 627
RseI CAYNNNNRTG 3 cut(s) 685, 1109, 1224
SacI GAGCTC 1 cut(s) 274
SapI GCTCTTC 1 cut(s) 335
SaqAI TTAA 3 cut(s) 108, 572, 1285
SatI GCNGC 2 cut(s) 780, 1044
Sau3AI GATC 1 cut(s) 555
Sau96I GGNCC 2 cut(s) 22, 692
SchI GAGTC 4 cut(s) 79, 197, 767, 912
ScrFI CCNGG 2 cut(s) 139, 1141
SduI GDGCHC 2 cut(s) 274, 330
SfaNI GCATC 2 cut(s) 791, 1028
SfcI CTRYAG 4 cut(s) 150, 366, 683, 735
SinI GGWCC 2 cut(s) 22, 692
SmiMI CAYNNNNRTG 3 cut(s) 685, 1109, 1224
Sse9I AATT 8 cut(s) 105, 276, 432, 438, 960, 1001, 1114, 1134
SsiI CCGC 1 cut(s) 147
SspI AATATT 1 cut(s) 1190
SspMI CTAG 1 cut(s) 579
SstI GAGCTC 1 cut(s) 274
StyD4I CCNGG 2 cut(s) 137, 1139
StyI CCWWGG 4 cut(s) 265, 659, 750, 922
TaaI ACNGT 3 cut(s) 339, 522, 898
TaiI ACGT 2 cut(s) 403, 915
TasI AATT 8 cut(s) 105, 276, 432, 438, 960, 1001, 1114, 1134
TfiI GAWTC 2 cut(s) 849, 1195
Tru1I TTAA 3 cut(s) 108, 572, 1285
Tru9I TTAA 3 cut(s) 108, 572, 1285
TscAI CASTG 5 cut(s) 687, 692, 892, 1086, 1189
TseFI GTSAC 1 cut(s) 713
TseI GCWGC 2 cut(s) 779, 1043
Tsp45I GTSAC 1 cut(s) 713
TspDTI ATGAA 4 cut(s) 18, 249, 1127, 1208
TspRI CASTG 5 cut(s) 687, 692, 892, 1086, 1189
VpaK11BI GGWCC 2 cut(s) 22, 692
XapI RAATTY 4 cut(s) 438, 960, 1001, 1114
XceI RCATGY 1 cut(s) 488
XcmI CCANNNNNNNNNTGG 1 cut(s) 128
XmnI GAANNNNTTC 1 cut(s) 522
XspI CTAG 1 cut(s) 579
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.