Rh2CG516900

nucleobase-ascorbate transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0004561
Physical Location & Seq
Reverse (-)
69191425 .. 69197324
5900 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG516900.1

Sequence Viewer

Length: 1197 bp
ATGCGTGCTATCCAAGGAGCTCTAATTGTAGCTTCAAGCATACAAATCATTCTGGGTTACAGCCAAGTTTGGGGTCTCTTCTCACGGTTTTTCAGTCCACTTGGCATGGCACCTGTAGTTGGATTAGTGGGCTTAGGATTCTTTGAACGAGGATTTCCAGAGTTGGGAAAGTGTGTGGAAATTGGACTTCCAATGTTGTTGTTGGTAATCGGGTTTTCTCAATATCTGAAGCATGTGAGACCACTTAGAGATGTCCCTATCTTTGAACGGTTTCCAGTATTGATTTGTGTCACAATCATTTGGATCTATTCCCTAATCTTAACTGCCGGTGGGGCTTACCGAGACAAACCCAATAAAACCCAAGTCAGCTGTCGTACGGATAGAGCAAATCTCATATCGACTGCCCCATGGTTCAAGTTTCCATATCCGCTGCAGTGGGGTCCACCTACATTTTCTGCTGGTCACTCATTTGCAATGATGTCTGCAGTTCTTGTTTCAATGGTTGAGTCAACTGGCGCATACAAGGCTGCATCGAGATTGGCAATTGCCACTCCTCCTCCTGCTTATGTTTTGAGCCGGGGTATTGGCTGGCAGGGAATCGGTGTTCTGCTTGATGGACTATATGGAACAGGCACTGGTTCAACTGTTTCTGTGGAAAACGTTGGACTCCTTGGACTGACACGGGTTGGAAGTCGGAGAGTTGTTCAAATTTCTGCTGGATTTATGATATTCTTCTCAACCTTAGGTAAATTTGGAGCTGTATTTGCATCTATACCTGCCCCTATATATGCTGCACTATACTGCATTCTCTTCGGCCTCGTGGCTTCAGTGGGATTATCATTTCTTCAATTCACAAATATGAATTCCATGAGAAACCTCATAATTACCGGGCTTTCGCTGTTCCTTGGGATATCAGTCCCCCACTTCTTCAATGAATATTGGAATCCTGTTCATCATGGTCTTGTCCATACCAATGCCGGATGGTTCAATGCATTTTTGAATACGATATTCTCATCTCCTGCTACTGTGGGGTTGATAGTGGCAGTGTTTCTTGATAACACAATAGAGGTAGAAAAAGCAAAGAAAGACAGAGGGATGCCATGGTGGGTTAAGTTCAGAACATTTCGAGGAGACAGCAGAAACGAAGAGTTCTACACTTTGCCGTTTAATCTCAACAGGTTCTTCCCACCTACGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005911 GO:0009506 GO:0030054 GO:0055044
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Xan_ur_permease

Protein Analysis

398

Amino Acids

43.78

Weight (kDa)

9.77

Isoelectric Point (pI)

31.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Xan_ur_permease PF00860 1 - 308 3.4e-51 Permease family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 784
AccB1I GGYRCC 1 cut(s) 109
AciI CCGC 1 cut(s) 428
AclI AACGTT 1 cut(s) 660
AclWI GGATC 1 cut(s) 311
AcsI RAATTY 3 cut(s) 708, 749, 862
AcuI CTGAAG 2 cut(s) 248, 810
AfaI GTAC 1 cut(s) 376
AfiI CCNNNNNNNGG 3 cut(s) 70, 119, 164
AloI GAACNNNNNNTCC 2 cut(s) 588, 620
AluBI AGCT 4 cut(s) 20, 32, 369, 758
AluI AGCT 4 cut(s) 20, 32, 369, 758
Alw21I GWGCWC 1 cut(s) 22
Alw26I GTCTC 4 cut(s) 80, 232, 336, 1125
AlwI GGATC 1 cut(s) 311
AlwNI CAGNNNCTG 1 cut(s) 635
AoxI GGCC 1 cut(s) 814
ApeKI GCWGC 3 cut(s) 430, 527, 791
ApoI RAATTY 3 cut(s) 708, 749, 862
Asp700I GAANNNNTTC 1 cut(s) 270
AspLEI GCGC 1 cut(s) 518
AspS9I GGNCC 1 cut(s) 440
AsuC2I CCSGG 2 cut(s) 578, 889
AvaII GGWCC 1 cut(s) 440
AxyI CCTNAGG 1 cut(s) 742
BanI GGYRCC 1 cut(s) 109
BanII GRGCYC 1 cut(s) 22
BauI CACGAG 1 cut(s) 818
Bbv12I GWGCWC 1 cut(s) 22
BbvI GCAGC 3 cut(s) 417, 514, 778
BccI CCATC 2 cut(s) 608, 975
BceAI ACGGC 1 cut(s) 1147
BcgI CGANNNNNNTGC 2 cut(s) 793, 827
BcnI CCSGG 2 cut(s) 578, 889
BcoDI GTCTC 4 cut(s) 80, 232, 336, 1125
BfmI CTRYAG 3 cut(s) 114, 431, 483
BfuAI ACCTGC 1 cut(s) 784
BglI GCCNNNNNGGC 1 cut(s) 332
BisI GCNGC 3 cut(s) 431, 528, 792
BlsI GCNGC 3 cut(s) 432, 529, 793
Bme1390I CCNGG 2 cut(s) 578, 889
Bme18I GGWCC 1 cut(s) 440
BmgT120I GGNCC 1 cut(s) 440
BmiI GGNNCC 2 cut(s) 111, 441
BmrFI CCNGG 2 cut(s) 578, 889
BmsI GCATC 3 cut(s) 539, 776, 1086
BplI GAGNNNNNCTC 2 cut(s) 375, 407
Bpu10I CCTNAGC 1 cut(s) 133
BpuMI CCSGG 2 cut(s) 578, 889
BsaAI YACGTR 1 cut(s) 1194
BsaI GGTCTC 2 cut(s) 80, 232
BsaJI CCNNGG 6 cut(s) 13, 407, 577, 670, 904, 1100
BsaXI ACNNNNNCTCC 2 cut(s) 541, 571
Bsc4I CCNNNNNNNGG 3 cut(s) 70, 119, 164
Bse118I RCCGGY 1 cut(s) 326
Bse1I ACTGG 3 cut(s) 275, 517, 640
Bse21I CCTNAGG 1 cut(s) 742
Bse3DI GCAATG 1 cut(s) 480
BseDI CCNNGG 6 cut(s) 13, 407, 577, 670, 904, 1100
BseGI GGATG 2 cut(s) 986, 1101
BseLI CCNNNNNNNGG 3 cut(s) 70, 119, 164
BseMI GCAATG 1 cut(s) 480
BseNI ACTGG 3 cut(s) 275, 517, 640
BseRI GAGGAG 3 cut(s) 543, 546, 1143
BseXI GCAGC 3 cut(s) 417, 514, 778
BsgI GTGCAG 1 cut(s) 777
BshFI GGCC 1 cut(s) 816
BshNI GGYRCC 1 cut(s) 109
BsiHKAI GWGCWC 1 cut(s) 22
BsiSI CCGG 4 cut(s) 327, 577, 888, 978
BsiWI CGTACG 1 cut(s) 374
BslFI GGGAC 2 cut(s) 239, 902
BslI CCNNNNNNNGG 3 cut(s) 70, 119, 164
BsmAI GTCTC 4 cut(s) 80, 232, 336, 1125
BsmFI GGGAC 2 cut(s) 239, 902
BsmI GAATGC 1 cut(s) 804
BsnI GGCC 1 cut(s) 816
Bso31I GGTCTC 2 cut(s) 80, 232
Bsp1286I GDGCHC 1 cut(s) 22
Bsp143I GATC 1 cut(s) 303
Bsp19I CCATGG 2 cut(s) 407, 1100
BspACI CCGC 1 cut(s) 428
BspANI GGCC 1 cut(s) 816
BspLI GGNNCC 2 cut(s) 111, 441
BspMAI CTGCAG 2 cut(s) 435, 487
BspMI ACCTGC 1 cut(s) 784
BspPI GGATC 1 cut(s) 311
BspT107I GGYRCC 1 cut(s) 109
BspTNI GGTCTC 2 cut(s) 80, 232
BsrDI GCAATG 1 cut(s) 480
BsrFI RCCGGY 1 cut(s) 326
BsrI ACTGG 3 cut(s) 275, 517, 640
BssAI RCCGGY 1 cut(s) 326
BssECI CCNNGG 6 cut(s) 13, 407, 577, 670, 904, 1100
BssMI GATC 1 cut(s) 303
BssSI CACGAG 1 cut(s) 818
BssT1I CCWWGG 5 cut(s) 13, 407, 670, 904, 1100
Bst2BI CACGAG 1 cut(s) 818
Bst4CI ACNGT 4 cut(s) 87, 270, 646, 1027
Bst6I CTCTTC 3 cut(s) 83, 815, 1140
BstBAI YACGTR 1 cut(s) 1194
BstC8I GCNNGC 2 cut(s) 6, 590
BstDEI CTNAG 3 cut(s) 133, 245, 742
BstDSI CCRYGG 2 cut(s) 407, 1100
BstF5I GGATG 2 cut(s) 986, 1101
BstHHI GCGC 1 cut(s) 518
BstKTI GATC 1 cut(s) 306
BstMAI GTCTC 4 cut(s) 80, 232, 336, 1125
BstMBI GATC 1 cut(s) 303
BstMWI GCNNNNNNNGC 3 cut(s) 332, 524, 764
BstNSI RCATGY 1 cut(s) 236
BstSCI CCNGG 2 cut(s) 576, 887
BstSFI CTRYAG 3 cut(s) 114, 431, 483
BstSNI TACGTA 1 cut(s) 1194
BstV1I GCAGC 3 cut(s) 417, 514, 778
BstX2I RGATCY 1 cut(s) 303
BstYI RGATCY 1 cut(s) 303
Bsu36I CCTNAGG 1 cut(s) 742
BsuRI GGCC 1 cut(s) 816
BtgI CCRYGG 2 cut(s) 407, 1100
BtsCI GGATG 2 cut(s) 986, 1101
BtsI GCAGTG 2 cut(s) 440, 1050
BtsIMutI CAGTG 4 cut(s) 440, 633, 834, 1050
BveI ACCTGC 1 cut(s) 784
Cac8I GCNNGC 2 cut(s) 6, 590
CaiI CAGNNNCTG 1 cut(s) 635
CfoI GCGC 1 cut(s) 518
Cfr10I RCCGGY 1 cut(s) 326
Cfr13I GGNCC 1 cut(s) 440
Csp6I GTAC 1 cut(s) 375
CviAII CATG 6 cut(s) 106, 233, 408, 868, 956, 1101
CviQI GTAC 1 cut(s) 375
DdeI CTNAG 3 cut(s) 133, 245, 742
DpnI GATC 1 cut(s) 305
DpnII GATC 1 cut(s) 303
Eam1104I CTCTTC 3 cut(s) 83, 815, 1140
EarI CTCTTC 3 cut(s) 83, 815, 1140
Ecl136II GAGCTC 1 cut(s) 20
Eco105I TACGTA 1 cut(s) 1194
Eco130I CCWWGG 5 cut(s) 13, 407, 670, 904, 1100
Eco24I GRGCYC 1 cut(s) 22
Eco31I GGTCTC 2 cut(s) 80, 232
Eco32I GATATC 1 cut(s) 912
Eco47I GGWCC 1 cut(s) 440
Eco53kI GAGCTC 1 cut(s) 20
Eco57I CTGAAG 2 cut(s) 248, 810
Eco81I CCTNAGG 1 cut(s) 742
EcoICRI GAGCTC 1 cut(s) 20
EcoRI GAATTC 1 cut(s) 862
EcoRV GATATC 1 cut(s) 912
EcoT14I CCWWGG 5 cut(s) 13, 407, 670, 904, 1100
EcoT22I ATGCAT 1 cut(s) 994
EcoT38I GRGCYC 1 cut(s) 22
ErhI CCWWGG 5 cut(s) 13, 407, 670, 904, 1100
FaeI CATG 6 cut(s) 109, 236, 411, 871, 959, 1104
FaqI GGGAC 2 cut(s) 239, 902
FatI CATG 6 cut(s) 105, 232, 407, 867, 955, 1100
Fnu4HI GCNGC 3 cut(s) 431, 528, 792
FokI GGATG 2 cut(s) 993, 1108
FriOI GRGCYC 1 cut(s) 22
Fsp4HI GCNGC 3 cut(s) 431, 528, 792
GlaI GCGC 1 cut(s) 517
GluI GCNGC 3 cut(s) 431, 528, 792
HaeIII GGCC 1 cut(s) 816
HapII CCGG 4 cut(s) 327, 577, 888, 978
HhaI GCGC 1 cut(s) 518
Hin1II CATG 6 cut(s) 109, 236, 411, 871, 959, 1104
Hin6I GCGC 1 cut(s) 516
HinP1I GCGC 1 cut(s) 516
HincII GTYRAC 1 cut(s) 510
HindII GTYRAC 1 cut(s) 510
HinfI GANTC 5 cut(s) 138, 506, 597, 666, 943
HpaII CCGG 4 cut(s) 327, 577, 888, 978
Hpy166II GTNNAC 3 cut(s) 98, 443, 510
Hpy188I TCNGA 3 cut(s) 228, 696, 1118
Hpy188III TCNNGA 3 cut(s) 158, 534, 1052
Hpy8I GTNNAC 3 cut(s) 98, 443, 510
HpyCH4III ACNGT 4 cut(s) 87, 270, 646, 1027
HpyCH4IV ACGT 2 cut(s) 660, 1193
HpyCH4V TGCA 8 cut(s) 433, 473, 485, 530, 767, 794, 804, 992
HpyF10VI GCNNNNNNNGC 3 cut(s) 332, 524, 764
HpyF3I CTNAG 3 cut(s) 133, 245, 742
HpySE526I ACGT 2 cut(s) 660, 1193
Hsp92II CATG 6 cut(s) 109, 236, 411, 871, 959, 1104
HspAI GCGC 1 cut(s) 516
Kzo9I GATC 1 cut(s) 303
LmnI GCTCC 2 cut(s) 17, 755
Lsp1109I GCAGC 3 cut(s) 417, 514, 778
LweI GCATC 3 cut(s) 539, 776, 1086
MaeII ACGT 2 cut(s) 660, 1193
MaeIII GTNAC 3 cut(s) 56, 289, 461
MalI GATC 1 cut(s) 305
MboI GATC 1 cut(s) 303
MboII GAAGA 7 cut(s) 70, 724, 802, 836, 919, 1157, 1174
MfeI CAATTG 1 cut(s) 543
MflI RGATCY 1 cut(s) 303
MhlI GDGCHC 1 cut(s) 22
MluCI AATT 8 cut(s) 24, 180, 543, 708, 749, 848, 862, 882
MlyI GAGTC 2 cut(s) 515, 660
MmeI TCCRAC 4 cut(s) 100, 643, 667, 674
MnlI CCTC 8 cut(s) 143, 564, 567, 827, 887, 1060, 1085, 1121
Mph1103I ATGCAT 1 cut(s) 994
MroXI GAANNNNTTC 1 cut(s) 270
MseI TTAA 3 cut(s) 320, 1110, 1167
MslI CAYNNNNRTG 2 cut(s) 857, 972
MspA1I CMGCKG 2 cut(s) 369, 430
MspI CCGG 4 cut(s) 327, 577, 888, 978
MspR9I CCNGG 2 cut(s) 578, 889
MunI CAATTG 1 cut(s) 543
Mva1269I GAATGC 1 cut(s) 804
MwoI GCNNNNNNNGC 3 cut(s) 332, 524, 764
NciI CCSGG 2 cut(s) 578, 889
NcoI CCATGG 2 cut(s) 407, 1100
NdeII GATC 1 cut(s) 303
NlaIII CATG 6 cut(s) 109, 236, 411, 871, 959, 1104
NlaIV GGNNCC 2 cut(s) 111, 441
NmuCI GTSAC 2 cut(s) 289, 461
NsiI ATGCAT 1 cut(s) 994
NspI RCATGY 1 cut(s) 236
PctI GAATGC 1 cut(s) 804
PdmI GAANNNNTTC 1 cut(s) 270
PfeI GAWTC 3 cut(s) 138, 597, 943
Pfl23II CGTACG 1 cut(s) 374
PkrI GCNGC 3 cut(s) 432, 529, 793
PleI GAGTC 2 cut(s) 514, 660
PpsI GAGTC 2 cut(s) 514, 660
Ppu21I YACGTR 1 cut(s) 1194
Psp124BI GAGCTC 1 cut(s) 22
Psp1406I AACGTT 1 cut(s) 660
PspLI CGTACG 1 cut(s) 374
PspN4I GGNNCC 2 cut(s) 111, 441
PspPI GGNCC 1 cut(s) 440
PstI CTGCAG 2 cut(s) 435, 487
PstNI CAGNNNCTG 1 cut(s) 635
PsuI RGATCY 1 cut(s) 303
PvuII CAGCTG 1 cut(s) 369
RsaI GTAC 1 cut(s) 376
RsaNI GTAC 1 cut(s) 375
RseI CAYNNNNRTG 2 cut(s) 857, 972
SacI GAGCTC 1 cut(s) 22
SaqAI TTAA 3 cut(s) 320, 1110, 1167
SatI GCNGC 3 cut(s) 431, 528, 792
Sau3AI GATC 1 cut(s) 303
Sau96I GGNCC 1 cut(s) 440
SchI GAGTC 2 cut(s) 515, 660
ScrFI CCNGG 2 cut(s) 578, 889
SduI GDGCHC 1 cut(s) 22
SfaNI GCATC 3 cut(s) 539, 776, 1086
SfcI CTRYAG 3 cut(s) 114, 431, 483
SinI GGWCC 1 cut(s) 440
SmiMI CAYNNNNRTG 2 cut(s) 857, 972
SnaBI TACGTA 1 cut(s) 1194
Sse9I AATT 8 cut(s) 24, 180, 543, 708, 749, 848, 862, 882
SsiI CCGC 1 cut(s) 428
SspI AATATT 1 cut(s) 938
SstI GAGCTC 1 cut(s) 22
StyD4I CCNGG 2 cut(s) 576, 887
StyI CCWWGG 5 cut(s) 13, 407, 670, 904, 1100
TaaI ACNGT 4 cut(s) 87, 270, 646, 1027
TaiI ACGT 2 cut(s) 663, 1196
TaqI TCGA 3 cut(s) 398, 533, 1126
TasI AATT 8 cut(s) 24, 180, 543, 708, 749, 848, 862, 882
TfiI GAWTC 3 cut(s) 138, 597, 943
Tru1I TTAA 3 cut(s) 320, 1110, 1167
Tru9I TTAA 3 cut(s) 320, 1110, 1167
TscAI CASTG 4 cut(s) 440, 640, 834, 1050
TseFI GTSAC 2 cut(s) 289, 461
TseI GCWGC 3 cut(s) 430, 527, 791
Tsp45I GTSAC 2 cut(s) 289, 461
TspDTI ATGAA 3 cut(s) 875, 941, 948
TspGWI ACGGA 1 cut(s) 392
TspRI CASTG 4 cut(s) 440, 640, 834, 1050
VpaK11BI GGWCC 1 cut(s) 440
XapI RAATTY 3 cut(s) 708, 749, 862
XceI RCATGY 1 cut(s) 236
XmnI GAANNNNTTC 1 cut(s) 270
Zsp2I ATGCAT 1 cut(s) 994
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.