Rorug02G0467000

nucleobase-ascorbate transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0004561
Physical Location & Seq
Forward (+)
59831828 .. 59833806
1979 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0467000.1

Sequence Viewer

Length: 609 bp
ATGGGAAAGGCTCCTCGTGATTCTTCTGTCGAGCATTATATTCAGGTGTTTGATATATCATCTTTACAAATATTCGCCCCACATGAATTGGACTATCTGCTTTGTGGCCGTAGAGAGCTGTGGGAGACGGAGACTCTTGCTGATCACATAAAGTTTGATCATGGATACACTGCGAAGAGCCCTGCAATACTTAATTTGCTTGAGATCATGGGTGAGTTCACGCCTGAGCAGCAGCGTGCCTTTTGCCAGTTTGTTACTGGTGCACCTAGGCTTCCCCCTGGTGGTTTGGCAGTGCTGAATCCAAAGCTGACTATTGTGAGAAAGCATTCTTCAACTGCAAATAATGCAGCAGCCAATGGGACTGGGGCTTCAGAATTGGCTGATGATGATCTGCCAAGTGTACATGTTGATCTGGCGCTGTTTGGTCATGTCCATAACTACGAGCGAACCTGCTCCATTTATAAGAGCCAATGCATGAAATTGCCTTGCAAAGATGAGGCTGGGATCGACACATATGATCACAGCAACTACAGTGGCCCAGTGCAGGCCATAATTGGAATGGCTGGCTTTTCCTTGGACAAGTTTCCCAGTGGTGTAAGTCCTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005911 GO:0009506 GO:0030054 GO:0055044
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Xan_ur_permease

Protein Analysis

202

Amino Acids

22.08

Weight (kDa)

5.51

Isoelectric Point (pI)

40.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HECT PF00632 15 - 135 1.4e-27 HECT-domain (ubiquitin-transferase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 462
Acc36I ACCTGC 1 cut(s) 458
AclWI GGATC 1 cut(s) 512
AcoI YGGCCR 1 cut(s) 106
AcuI CTGAAG 1 cut(s) 354
AfaI GTAC 1 cut(s) 402
AfiI CCNNNNNNNGG 2 cut(s) 281, 544
AflIII ACRYGT 1 cut(s) 403
AgsI TTSAA 1 cut(s) 333
AjnI CCWGG 1 cut(s) 277
AluBI AGCT 2 cut(s) 118, 307
AluI AGCT 2 cut(s) 118, 307
Alw21I GWGCWC 1 cut(s) 265
Alw26I GTCTC 2 cut(s) 119, 125
Alw44I GTGCAC 1 cut(s) 261
AlwI GGATC 1 cut(s) 512
AoxI GGCC 3 cut(s) 106, 535, 546
ApaLI GTGCAC 1 cut(s) 261
ApeKI GCWGC 4 cut(s) 229, 232, 347, 350
Asp700I GAANNNNTTC 1 cut(s) 325
AspA2I CCTAGG 1 cut(s) 266
AspLEI GCGC 1 cut(s) 418
AspS9I GGNCC 1 cut(s) 536
AsuHPI GGTGA 1 cut(s) 224
AvrII CCTAGG 1 cut(s) 266
BaeGI GKGCMC 1 cut(s) 265
BanII GRGCYC 1 cut(s) 182
BauI CACGAG 1 cut(s) 15
Bbv12I GWGCWC 1 cut(s) 265
BbvI GCAGC 4 cut(s) 241, 244, 359, 362
BceAI ACGGC 1 cut(s) 93
BciT130I CCWGG 1 cut(s) 279
BciVI GTATCC 1 cut(s) 158
BclI TGATCA 3 cut(s) 142, 157, 517
BcoDI GTCTC 2 cut(s) 119, 125
BfaI CTAG 1 cut(s) 267
BfmI CTRYAG 1 cut(s) 529
BfoI RGCGCY 1 cut(s) 419
BfuAI ACCTGC 1 cut(s) 458
BfuI GTATCC 1 cut(s) 158
BisI GCNGC 4 cut(s) 230, 233, 348, 351
BlnI CCTAGG 1 cut(s) 266
BlsI GCNGC 4 cut(s) 231, 234, 349, 352
Bme1390I CCNGG 1 cut(s) 279
BmgT120I GGNCC 1 cut(s) 536
BmiI GGNNCC 1 cut(s) 12
BmrFI CCNGG 1 cut(s) 279
BmrI ACTGGG 3 cut(s) 372, 533, 582
BmuI ACTGGG 3 cut(s) 372, 533, 582
Bpu10I CCTNAGC 1 cut(s) 225
BpuEI CTTGAG 1 cut(s) 221
BsaBI GATNNNNATC 1 cut(s) 387
BsaJI CCNNGG 3 cut(s) 266, 277, 573
Bsc4I CCNNNNNNNGG 2 cut(s) 281, 544
Bse1I ACTGG 5 cut(s) 247, 262, 367, 539, 588
Bse8I GATNNNNATC 1 cut(s) 387
BseBI CCWGG 1 cut(s) 279
BseDI CCNNGG 3 cut(s) 266, 277, 573
BseJI GATNNNNATC 1 cut(s) 387
BseLI CCNNNNNNNGG 2 cut(s) 281, 544
BseMII CTCAG 1 cut(s) 216
BseNI ACTGG 5 cut(s) 247, 262, 367, 539, 588
BseSI GKGCMC 1 cut(s) 265
BseXI GCAGC 4 cut(s) 241, 244, 359, 362
BseYI CCCAGC 1 cut(s) 500
BsgI GTGCAG 1 cut(s) 563
BshFI GGCC 3 cut(s) 108, 537, 548
BsiHKAI GWGCWC 1 cut(s) 265
BslFI GGGAC 1 cut(s) 373
BslI CCNNNNNNNGG 2 cut(s) 281, 544
BsmAI GTCTC 2 cut(s) 119, 125
BsmBI CGTCTC 1 cut(s) 119
BsmFI GGGAC 1 cut(s) 373
BsmI GAATGC 1 cut(s) 325
BsnI GGCC 3 cut(s) 108, 537, 548
Bsp1286I GDGCHC 2 cut(s) 182, 265
Bsp1407I TGTACA 1 cut(s) 400
Bsp143I GATC 7 cut(s) 142, 157, 204, 388, 409, 504, 517
BspANI GGCC 3 cut(s) 108, 537, 548
BspCNI CTCAG 1 cut(s) 217
BspLI GGNNCC 1 cut(s) 12
BspMI ACCTGC 1 cut(s) 458
BspPI GGATC 1 cut(s) 512
BspQI GCTCTTC 1 cut(s) 170
BsrGI TGTACA 1 cut(s) 400
BsrI ACTGG 5 cut(s) 247, 262, 367, 539, 588
BssECI CCNNGG 3 cut(s) 266, 277, 573
BssMI GATC 7 cut(s) 142, 157, 204, 388, 409, 504, 517
BssSI CACGAG 1 cut(s) 15
BssT1I CCWWGG 2 cut(s) 266, 573
Bst2BI CACGAG 1 cut(s) 15
Bst2UI CCWGG 1 cut(s) 279
Bst4CI ACNGT 1 cut(s) 533
Bst6I CTCTTC 1 cut(s) 170
BstAPI GCANNNNNTGC 1 cut(s) 344
BstAUI TGTACA 1 cut(s) 400
BstC8I GCNNGC 3 cut(s) 237, 546, 565
BstDEI CTNAG 1 cut(s) 225
BstH2I RGCGCY 1 cut(s) 419
BstHHI GCGC 1 cut(s) 418
BstKTI GATC 7 cut(s) 145, 160, 207, 391, 412, 507, 520
BstMAI GTCTC 2 cut(s) 119, 125
BstMBI GATC 7 cut(s) 142, 157, 204, 388, 409, 504, 517
BstMWI GCNNNNNNNGC 2 cut(s) 229, 344
BstNI CCWGG 1 cut(s) 279
BstNSI RCATGY 1 cut(s) 407
BstSCI CCNGG 1 cut(s) 277
BstSFI CTRYAG 1 cut(s) 529
BstSLI GKGCMC 1 cut(s) 265
BstV1I GCAGC 4 cut(s) 241, 244, 359, 362
BsuI GTATCC 1 cut(s) 158
BsuRI GGCC 3 cut(s) 108, 537, 548
BtsI GCAGTG 2 cut(s) 168, 297
BtsIMutI CAGTG 5 cut(s) 168, 297, 538, 546, 595
BveI ACCTGC 1 cut(s) 458
Cac8I GCNNGC 3 cut(s) 237, 546, 565
CfoI GCGC 1 cut(s) 418
Cfr13I GGNCC 1 cut(s) 536
Csp6I GTAC 1 cut(s) 401
CspCI CAANNNNNGTGG 4 cut(s) 69, 104, 514, 549
CviAII CATG 6 cut(s) 83, 161, 208, 404, 428, 475
CviQI GTAC 1 cut(s) 401
DdeI CTNAG 1 cut(s) 225
DpnI GATC 7 cut(s) 144, 159, 206, 390, 411, 506, 519
DpnII GATC 7 cut(s) 142, 157, 204, 388, 409, 504, 517
EaeI YGGCCR 1 cut(s) 106
Eam1104I CTCTTC 1 cut(s) 170
EarI CTCTTC 1 cut(s) 170
Eco130I CCWWGG 2 cut(s) 266, 573
Eco24I GRGCYC 1 cut(s) 182
Eco57I CTGAAG 1 cut(s) 354
EcoRII CCWGG 1 cut(s) 277
EcoT14I CCWWGG 2 cut(s) 266, 573
EcoT22I ATGCAT 1 cut(s) 476
EcoT38I GRGCYC 1 cut(s) 182
ErhI CCWWGG 2 cut(s) 266, 573
Esp3I CGTCTC 1 cut(s) 119
FaeI CATG 6 cut(s) 86, 164, 211, 407, 431, 478
FalI AAGNNNNNCTT 1 cut(s) 589
FaqI GGGAC 1 cut(s) 373
FatI CATG 6 cut(s) 82, 160, 207, 403, 427, 474
FauNDI CATATG 1 cut(s) 514
FbaI TGATCA 3 cut(s) 142, 157, 517
Fnu4HI GCNGC 4 cut(s) 230, 233, 348, 351
FriOI GRGCYC 1 cut(s) 182
Fsp4HI GCNGC 4 cut(s) 230, 233, 348, 351
FspBI CTAG 1 cut(s) 267
GlaI GCGC 1 cut(s) 417
GluI GCNGC 4 cut(s) 230, 233, 348, 351
GsaI CCCAGC 1 cut(s) 504
HaeII RGCGCY 1 cut(s) 419
HaeIII GGCC 3 cut(s) 108, 537, 548
HhaI GCGC 1 cut(s) 418
Hin1II CATG 6 cut(s) 86, 164, 211, 407, 431, 478
Hin6I GCGC 1 cut(s) 416
HinP1I GCGC 1 cut(s) 416
HinfI GANTC 3 cut(s) 20, 133, 298
HphI GGTGA 1 cut(s) 224
Hpy166II GTNNAC 3 cut(s) 219, 263, 401
Hpy188I TCNGA 1 cut(s) 373
Hpy188III TCNNGA 2 cut(s) 17, 606
Hpy8I GTNNAC 3 cut(s) 219, 263, 401
HpyCH4III ACNGT 1 cut(s) 533
HpyCH4V TGCA 7 cut(s) 185, 263, 338, 347, 474, 489, 544
HpyF10VI GCNNNNNNNGC 2 cut(s) 229, 344
HpyF3I CTNAG 1 cut(s) 225
Hsp92II CATG 6 cut(s) 86, 164, 211, 407, 431, 478
HspAI GCGC 1 cut(s) 416
Ksp22I TGATCA 3 cut(s) 142, 157, 517
Kzo9I GATC 7 cut(s) 142, 157, 204, 388, 409, 504, 517
LguI GCTCTTC 1 cut(s) 170
LmnI GCTCC 2 cut(s) 16, 458
Lsp1109I GCAGC 4 cut(s) 241, 244, 359, 362
MaeI CTAG 1 cut(s) 267
MaeIII GTNAC 1 cut(s) 253
MalI GATC 7 cut(s) 144, 159, 206, 390, 411, 506, 519
MboI GATC 7 cut(s) 142, 157, 204, 388, 409, 504, 517
MboII GAAGA 3 cut(s) 15, 187, 321
MhlI GDGCHC 2 cut(s) 182, 265
MluCI AATT 5 cut(s) 86, 193, 374, 479, 552
MlyI GAGTC 1 cut(s) 127
MnlI CCTC 2 cut(s) 24, 490
Mph1103I ATGCAT 1 cut(s) 476
MroXI GAANNNNTTC 1 cut(s) 325
MseI TTAA 1 cut(s) 192
MspR9I CCNGG 1 cut(s) 279
Mva1269I GAATGC 1 cut(s) 325
MvaI CCWGG 1 cut(s) 279
MwoI GCNNNNNNNGC 2 cut(s) 229, 344
NdeI CATATG 1 cut(s) 514
NdeII GATC 7 cut(s) 142, 157, 204, 388, 409, 504, 517
NlaIII CATG 6 cut(s) 86, 164, 211, 407, 431, 478
NlaIV GGNNCC 1 cut(s) 12
NsiI ATGCAT 1 cut(s) 476
NspI RCATGY 1 cut(s) 407
PciI ACATGT 1 cut(s) 403
PciSI GCTCTTC 1 cut(s) 170
PctI GAATGC 1 cut(s) 325
PdmI GAANNNNTTC 1 cut(s) 325
PfeI GAWTC 2 cut(s) 20, 298
PkrI GCNGC 4 cut(s) 231, 234, 349, 352
PleI GAGTC 1 cut(s) 127
PpsI GAGTC 1 cut(s) 127
PscI ACATGT 1 cut(s) 403
PsiI TTATAA 1 cut(s) 462
Psp6I CCWGG 1 cut(s) 277
PspFI CCCAGC 1 cut(s) 500
PspGI CCWGG 1 cut(s) 277
PspN4I GGNNCC 1 cut(s) 12
PspPI GGNCC 1 cut(s) 536
RsaI GTAC 1 cut(s) 402
RsaNI GTAC 1 cut(s) 401
SapI GCTCTTC 1 cut(s) 170
SaqAI TTAA 1 cut(s) 192
SatI GCNGC 4 cut(s) 230, 233, 348, 351
Sau3AI GATC 7 cut(s) 142, 157, 204, 388, 409, 504, 517
Sau96I GGNCC 1 cut(s) 536
SchI GAGTC 1 cut(s) 127
ScrFI CCNGG 1 cut(s) 279
SduI GDGCHC 2 cut(s) 182, 265
SetI ASST 5 cut(s) 48, 120, 268, 309, 452
SfcI CTRYAG 1 cut(s) 529
SmlI CTYRAG 1 cut(s) 200
SmoI CTYRAG 1 cut(s) 200
Sse9I AATT 5 cut(s) 86, 193, 374, 479, 552
SspI AATATT 1 cut(s) 72
SspMI CTAG 1 cut(s) 267
StyD4I CCNGG 1 cut(s) 277
StyI CCWWGG 2 cut(s) 266, 573
TaaI ACNGT 1 cut(s) 533
TaqI TCGA 2 cut(s) 30, 507
TasI AATT 5 cut(s) 86, 193, 374, 479, 552
TatI WGTACW 1 cut(s) 400
TfiI GAWTC 2 cut(s) 20, 298
Tru1I TTAA 1 cut(s) 192
Tru9I TTAA 1 cut(s) 192
TscAI CASTG 5 cut(s) 175, 297, 538, 546, 595
TseI GCWGC 4 cut(s) 229, 232, 347, 350
TspDTI ATGAA 2 cut(s) 99, 491
TspGWI ACGGA 1 cut(s) 143
TspRI CASTG 5 cut(s) 175, 297, 538, 546, 595
VneI GTGCAC 1 cut(s) 261
XceI RCATGY 1 cut(s) 407
XcmI CCANNNNNNNNNTGG 2 cut(s) 254, 556
XmaJI CCTAGG 1 cut(s) 266
XmnI GAANNNNTTC 1 cut(s) 325
XspI CTAG 1 cut(s) 267
Zsp2I ATGCAT 1 cut(s) 476
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.