Rh2BG546800

nucleobase-ascorbate transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0004561
Physical Location & Seq
Reverse (-)
75641970 .. 75647748
5779 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG546800.1

Sequence Viewer

Length: 1140 bp
ATGGCTGACATTACACACCCTCCAATGGACCAGCTCCAGGACCTTGAGTACTGTATAGACTCCAACCCTCCTTGGGCTGAAACCATAGTTCTGGCATTTCAAAACTACATTGTCATGCTTGGCAAAAGTGTAATGATCCCTTCGTTACTTGTCCCTGCAATGGGTGGAAGTGATGGTGACAAAGCACGAGTAATACAGACTCTCCTTTTTGTTGCTGGAATTAAGACACTTCTCCAAGCACTTTTTGGAACCAGGCTACCTGCTGTAGTTGGAGGCTCCTTTGCTTATGTCGTTCCAATAGCCTACATTATAAACGACTCCAAATTGCATCGGATTACTGATGATCATGAAAGATTTATACAAACAATGCGTGCTATCCAAGGAGCTCTAATTGTAGCTTCAAGCATACAAATCATTCTGGGTTACAGCCAAGTTTGGGGTCTCTTCTCACGGTTTTTCAGTCCACTTGGCATGGCACCTGTAGTTGGATTAGTGGGCTTAGGATTCTTTGAACGAGGATTTCCAGAGTTGGGAAAGTGTGTGGAAATTGGACTTCCAATGCTGTTGTTGGTCATCGGGTTTTCTCAATATCTGAAGCATGTGAGACCACTTAGAGATGTCCCTATCTTTGAACGGTTTCCAGTATTGATTTGTGTCACAATCATTTGGATCTATTCCCTAATCTTAACTGCCGGTGGGGCTTACCGAGACAAACCCAATAAAACCCAAGTCAGCTGTCGTACGGATAGAGCAAATCTCATATCGACTGCCCCATGGTTCAAGTTTCCATATCCGCTGCAGTGGGGTCCACCTACATTTTCTGCTGGTCACTCATTTGCAATGATGTCTGCAGTTCTTGTTTCAATGGTTGAGTCAACTGGCGCATACAAGGCTGCATCGAGATTGGCAATTGCCACTCCTCCTCCTGCTTATGTTTTGAGCCGGGGTATTGGCTGGCAGGGAATCGGTGTTCTGCTTGATGGACTATATGGAACAGGCACTGGTTCAACTGTTTCTGTGGAAAACGTTGGACTCCTTGGACTGACACGGGTTGGAAGTCGGAGAGTTGTTCAAATTTCTGCTGGATTTATGATATTCTTCTCAACCTTAGGTAAGAATTTTACCTTAATGAGACAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005911 GO:0009506 GO:0030054 GO:0055044
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Xan_ur_permease

Protein Analysis

379

Amino Acids

41.33

Weight (kDa)

9.35

Isoelectric Point (pI)

27.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Xan_ur_permease PF00860 27 - 372 9.4e-49 Permease family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 311
Acc36I ACCTGC 1 cut(s) 268
AccB1I GGYRCC 1 cut(s) 475
AciI CCGC 1 cut(s) 794
AclI AACGTT 1 cut(s) 1026
AclWI GGATC 2 cut(s) 130, 677
AcsI RAATTY 2 cut(s) 1074, 1117
AcuI CTGAAG 1 cut(s) 614
AfaI GTAC 2 cut(s) 50, 742
AfiI CCNNNNNNNGG 8 cut(s) 25, 37, 73, 160, 161, 436, 485, 530
AgsI TTSAA 8 cut(s) 101, 402, 512, 632, 781, 864, 1008, 1073
AjnI CCWGG 2 cut(s) 36, 251
AloI GAACNNNNNNTCC 2 cut(s) 954, 986
AluBI AGCT 4 cut(s) 34, 386, 398, 735
AluI AGCT 4 cut(s) 34, 386, 398, 735
Alw21I GWGCWC 1 cut(s) 388
Alw26I GTCTC 4 cut(s) 446, 598, 702, 1126
AlwI GGATC 2 cut(s) 130, 677
AlwNI CAGNNNCTG 1 cut(s) 1001
ApeKI GCWGC 2 cut(s) 796, 893
ApoI RAATTY 2 cut(s) 1074, 1117
Asp700I GAANNNNTTC 1 cut(s) 636
AspLEI GCGC 1 cut(s) 884
AspS9I GGNCC 3 cut(s) 28, 40, 806
AsuC2I CCSGG 1 cut(s) 944
AsuHPI GGTGA 1 cut(s) 188
AvaII GGWCC 3 cut(s) 28, 40, 806
AxyI CCTNAGG 1 cut(s) 1108
BanI GGYRCC 1 cut(s) 475
BanII GRGCYC 1 cut(s) 388
BauI CACGAG 1 cut(s) 186
Bbv12I GWGCWC 1 cut(s) 388
BbvI GCAGC 2 cut(s) 783, 880
BccI CCATC 2 cut(s) 167, 974
BciT130I CCWGG 2 cut(s) 38, 253
BclI TGATCA 1 cut(s) 343
BcnI CCSGG 1 cut(s) 944
BcoDI GTCTC 4 cut(s) 446, 598, 702, 1126
BfmI CTRYAG 4 cut(s) 264, 480, 797, 849
BfuAI ACCTGC 1 cut(s) 268
BglI GCCNNNNNGGC 1 cut(s) 698
BisI GCNGC 2 cut(s) 797, 894
BlsI GCNGC 2 cut(s) 798, 895
BmcAI AGTACT 1 cut(s) 50
Bme1390I CCNGG 3 cut(s) 38, 253, 944
Bme18I GGWCC 3 cut(s) 28, 40, 806
BmgT120I GGNCC 3 cut(s) 28, 40, 806
BmiI GGNNCC 4 cut(s) 250, 277, 477, 807
BmrFI CCNGG 3 cut(s) 38, 253, 944
BmsI GCATC 2 cut(s) 337, 905
BplI GAGNNNNNCTC 2 cut(s) 741, 773
BpmI CTGGAG 1 cut(s) 20
Bpu10I CCTNAGC 1 cut(s) 499
BpuEI CTTGAG 1 cut(s) 65
BpuMI CCSGG 1 cut(s) 944
BsaI GGTCTC 2 cut(s) 446, 598
BsaJI CCNNGG 5 cut(s) 71, 379, 773, 943, 1036
BsaXI ACNNNNNCTCC 5 cut(s) 34, 186, 216, 907, 937
Bsc4I CCNNNNNNNGG 8 cut(s) 25, 37, 73, 160, 161, 436, 485, 530
Bse118I RCCGGY 1 cut(s) 692
Bse1I ACTGG 3 cut(s) 641, 883, 1006
Bse21I CCTNAGG 1 cut(s) 1108
Bse3DI GCAATG 2 cut(s) 165, 846
BseBI CCWGG 2 cut(s) 38, 253
BseDI CCNNGG 5 cut(s) 71, 379, 773, 943, 1036
BseLI CCNNNNNNNGG 8 cut(s) 25, 37, 73, 160, 161, 436, 485, 530
BseMI GCAATG 2 cut(s) 165, 846
BseNI ACTGG 3 cut(s) 641, 883, 1006
BseRI GAGGAG 2 cut(s) 909, 912
BseXI GCAGC 2 cut(s) 783, 880
BshNI GGYRCC 1 cut(s) 475
BsiHKAI GWGCWC 1 cut(s) 388
BsiSI CCGG 2 cut(s) 693, 943
BsiWI CGTACG 1 cut(s) 740
BslFI GGGAC 2 cut(s) 137, 605
BslI CCNNNNNNNGG 8 cut(s) 25, 37, 73, 160, 161, 436, 485, 530
BsmAI GTCTC 4 cut(s) 446, 598, 702, 1126
BsmFI GGGAC 2 cut(s) 137, 605
Bso31I GGTCTC 2 cut(s) 446, 598
Bsp1286I GDGCHC 1 cut(s) 388
Bsp143I GATC 3 cut(s) 135, 343, 669
Bsp19I CCATGG 1 cut(s) 773
BspACI CCGC 1 cut(s) 794
BspHI TCATGA 1 cut(s) 346
BspLI GGNNCC 4 cut(s) 250, 277, 477, 807
BspMAI CTGCAG 2 cut(s) 801, 853
BspMI ACCTGC 1 cut(s) 268
BspPI GGATC 2 cut(s) 130, 677
BspT107I GGYRCC 1 cut(s) 475
BspTNI GGTCTC 2 cut(s) 446, 598
BsrDI GCAATG 2 cut(s) 165, 846
BsrFI RCCGGY 1 cut(s) 692
BsrI ACTGG 3 cut(s) 641, 883, 1006
BssAI RCCGGY 1 cut(s) 692
BssECI CCNNGG 5 cut(s) 71, 379, 773, 943, 1036
BssMI GATC 3 cut(s) 135, 343, 669
BssSI CACGAG 1 cut(s) 186
BssT1I CCWWGG 4 cut(s) 71, 379, 773, 1036
Bst2BI CACGAG 1 cut(s) 186
Bst2UI CCWGG 2 cut(s) 38, 253
Bst4CI ACNGT 4 cut(s) 53, 453, 636, 1012
Bst6I CTCTTC 1 cut(s) 449
BstC8I GCNNGC 2 cut(s) 372, 956
BstDEI CTNAG 3 cut(s) 499, 611, 1108
BstDSI CCRYGG 1 cut(s) 773
BstHHI GCGC 1 cut(s) 884
BstKTI GATC 3 cut(s) 138, 346, 672
BstMAI GTCTC 4 cut(s) 446, 598, 702, 1126
BstMBI GATC 3 cut(s) 135, 343, 669
BstMWI GCNNNNNNNGC 2 cut(s) 698, 890
BstNI CCWGG 2 cut(s) 38, 253
BstNSI RCATGY 1 cut(s) 602
BstSCI CCNGG 3 cut(s) 36, 251, 942
BstSFI CTRYAG 4 cut(s) 264, 480, 797, 849
BstV1I GCAGC 2 cut(s) 783, 880
BstX2I RGATCY 1 cut(s) 669
BstXI CCANNNNNNTGG 1 cut(s) 91
BstYI RGATCY 1 cut(s) 669
Bsu36I CCTNAGG 1 cut(s) 1108
BtgI CCRYGG 1 cut(s) 773
BtsI GCAGTG 1 cut(s) 806
BtsIMutI CAGTG 2 cut(s) 806, 999
BveI ACCTGC 1 cut(s) 268
Cac8I GCNNGC 2 cut(s) 372, 956
CaiI CAGNNNCTG 1 cut(s) 1001
CciI TCATGA 1 cut(s) 346
CfoI GCGC 1 cut(s) 884
Cfr10I RCCGGY 1 cut(s) 692
Cfr13I GGNCC 3 cut(s) 28, 40, 806
Csp6I GTAC 2 cut(s) 49, 741
CviAII CATG 5 cut(s) 115, 347, 472, 599, 774
CviQI GTAC 2 cut(s) 49, 741
DdeI CTNAG 3 cut(s) 499, 611, 1108
DpnI GATC 3 cut(s) 137, 345, 671
DpnII GATC 3 cut(s) 135, 343, 669
Eam1104I CTCTTC 1 cut(s) 449
EarI CTCTTC 1 cut(s) 449
Ecl136II GAGCTC 1 cut(s) 386
Eco130I CCWWGG 4 cut(s) 71, 379, 773, 1036
Eco24I GRGCYC 1 cut(s) 388
Eco31I GGTCTC 2 cut(s) 446, 598
Eco47I GGWCC 3 cut(s) 28, 40, 806
Eco53kI GAGCTC 1 cut(s) 386
Eco57I CTGAAG 1 cut(s) 614
Eco81I CCTNAGG 1 cut(s) 1108
EcoICRI GAGCTC 1 cut(s) 386
EcoO109I RGGNCCY 1 cut(s) 40
EcoRII CCWGG 2 cut(s) 36, 251
EcoT14I CCWWGG 4 cut(s) 71, 379, 773, 1036
EcoT38I GRGCYC 1 cut(s) 388
ErhI CCWWGG 4 cut(s) 71, 379, 773, 1036
FaeI CATG 5 cut(s) 118, 350, 475, 602, 777
FaqI GGGAC 2 cut(s) 137, 605
FatI CATG 5 cut(s) 114, 346, 471, 598, 773
FbaI TGATCA 1 cut(s) 343
Fnu4HI GCNGC 2 cut(s) 797, 894
FriOI GRGCYC 1 cut(s) 388
Fsp4HI GCNGC 2 cut(s) 797, 894
GlaI GCGC 1 cut(s) 883
GluI GCNGC 2 cut(s) 797, 894
GsuI CTGGAG 1 cut(s) 20
HapII CCGG 2 cut(s) 693, 943
HhaI GCGC 1 cut(s) 884
Hin1II CATG 5 cut(s) 118, 350, 475, 602, 777
Hin6I GCGC 1 cut(s) 882
HinP1I GCGC 1 cut(s) 882
HincII GTYRAC 1 cut(s) 876
HindII GTYRAC 1 cut(s) 876
HinfI GANTC 7 cut(s) 59, 199, 317, 504, 872, 963, 1032
HpaII CCGG 2 cut(s) 693, 943
HphI GGTGA 1 cut(s) 188
Hpy166II GTNNAC 3 cut(s) 464, 809, 876
Hpy188I TCNGA 3 cut(s) 333, 594, 1062
Hpy188III TCNNGA 3 cut(s) 347, 524, 900
Hpy8I GTNNAC 3 cut(s) 464, 809, 876
HpyAV CCTTC 1 cut(s) 150
HpyCH4III ACNGT 4 cut(s) 53, 453, 636, 1012
HpyCH4IV ACGT 1 cut(s) 1026
HpyCH4V TGCA 6 cut(s) 158, 328, 799, 839, 851, 896
HpyF10VI GCNNNNNNNGC 2 cut(s) 698, 890
HpyF3I CTNAG 3 cut(s) 499, 611, 1108
HpySE526I ACGT 1 cut(s) 1026
Hsp92II CATG 5 cut(s) 118, 350, 475, 602, 777
HspAI GCGC 1 cut(s) 882
Ksp22I TGATCA 1 cut(s) 343
Kzo9I GATC 3 cut(s) 135, 343, 669
LmnI GCTCC 3 cut(s) 39, 281, 383
Lsp1109I GCAGC 2 cut(s) 783, 880
LweI GCATC 2 cut(s) 337, 905
MaeII ACGT 1 cut(s) 1026
MaeIII GTNAC 5 cut(s) 144, 176, 422, 655, 827
MalI GATC 3 cut(s) 137, 345, 671
MboI GATC 3 cut(s) 135, 343, 669
MboII GAAGA 2 cut(s) 436, 1090
MfeI CAATTG 1 cut(s) 909
MflI RGATCY 1 cut(s) 669
MhlI GDGCHC 1 cut(s) 388
MluCI AATT 7 cut(s) 219, 323, 390, 546, 909, 1074, 1117
MlyI GAGTC 5 cut(s) 53, 193, 311, 881, 1026
MmeI TCCRAC 6 cut(s) 87, 250, 466, 1009, 1033, 1040
MnlI CCTC 6 cut(s) 30, 78, 266, 509, 930, 933
MroXI GAANNNNTTC 1 cut(s) 636
MseI TTAA 3 cut(s) 222, 686, 1127
MslI CAYNNNNRTG 1 cut(s) 113
MspA1I CMGCKG 2 cut(s) 735, 796
MspI CCGG 2 cut(s) 693, 943
MspR9I CCNGG 3 cut(s) 38, 253, 944
MunI CAATTG 1 cut(s) 909
MvaI CCWGG 2 cut(s) 38, 253
MwoI GCNNNNNNNGC 2 cut(s) 698, 890
NciI CCSGG 1 cut(s) 944
NcoI CCATGG 1 cut(s) 773
NdeII GATC 3 cut(s) 135, 343, 669
NlaIII CATG 5 cut(s) 118, 350, 475, 602, 777
NlaIV GGNNCC 4 cut(s) 250, 277, 477, 807
NmuCI GTSAC 3 cut(s) 176, 655, 827
NspI RCATGY 1 cut(s) 602
PagI TCATGA 1 cut(s) 346
PdmI GAANNNNTTC 1 cut(s) 636
PfeI GAWTC 2 cut(s) 504, 963
Pfl23II CGTACG 1 cut(s) 740
PfoI TCCNGGA 1 cut(s) 36
PkrI GCNGC 2 cut(s) 798, 895
PleI GAGTC 5 cut(s) 53, 193, 311, 880, 1026
PpsI GAGTC 5 cut(s) 53, 193, 311, 880, 1026
PpuMI RGGWCCY 1 cut(s) 40
PsiI TTATAA 1 cut(s) 311
Psp124BI GAGCTC 1 cut(s) 388
Psp1406I AACGTT 1 cut(s) 1026
Psp5II RGGWCCY 1 cut(s) 40
Psp6I CCWGG 2 cut(s) 36, 251
PspGI CCWGG 2 cut(s) 36, 251
PspLI CGTACG 1 cut(s) 740
PspN4I GGNNCC 4 cut(s) 250, 277, 477, 807
PspPI GGNCC 3 cut(s) 28, 40, 806
PspPPI RGGWCCY 1 cut(s) 40
PstI CTGCAG 2 cut(s) 801, 853
PstNI CAGNNNCTG 1 cut(s) 1001
PsuI RGATCY 1 cut(s) 669
PvuII CAGCTG 1 cut(s) 735
RsaI GTAC 2 cut(s) 50, 742
RsaNI GTAC 2 cut(s) 49, 741
RseI CAYNNNNRTG 1 cut(s) 113
SacI GAGCTC 1 cut(s) 388
SaqAI TTAA 3 cut(s) 222, 686, 1127
SatI GCNGC 2 cut(s) 797, 894
Sau3AI GATC 3 cut(s) 135, 343, 669
Sau96I GGNCC 3 cut(s) 28, 40, 806
ScaI AGTACT 1 cut(s) 50
SchI GAGTC 5 cut(s) 53, 193, 311, 881, 1026
ScrFI CCNGG 3 cut(s) 38, 253, 944
SduI GDGCHC 1 cut(s) 388
SfaNI GCATC 2 cut(s) 337, 905
SfcI CTRYAG 4 cut(s) 264, 480, 797, 849
SinI GGWCC 3 cut(s) 28, 40, 806
SmiMI CAYNNNNRTG 1 cut(s) 113
SmlI CTYRAG 1 cut(s) 44
SmoI CTYRAG 1 cut(s) 44
Sse9I AATT 7 cut(s) 219, 323, 390, 546, 909, 1074, 1117
SsiI CCGC 1 cut(s) 794
SstI GAGCTC 1 cut(s) 388
StyD4I CCNGG 3 cut(s) 36, 251, 942
StyI CCWWGG 4 cut(s) 71, 379, 773, 1036
TaaI ACNGT 4 cut(s) 53, 453, 636, 1012
TaiI ACGT 1 cut(s) 1029
TaqI TCGA 2 cut(s) 764, 899
TasI AATT 7 cut(s) 219, 323, 390, 546, 909, 1074, 1117
TatI WGTACW 1 cut(s) 48
TfiI GAWTC 2 cut(s) 504, 963
Tru1I TTAA 3 cut(s) 222, 686, 1127
Tru9I TTAA 3 cut(s) 222, 686, 1127
TscAI CASTG 2 cut(s) 806, 1006
TseFI GTSAC 3 cut(s) 176, 655, 827
TseI GCWGC 2 cut(s) 796, 893
Tsp45I GTSAC 3 cut(s) 176, 655, 827
TspDTI ATGAA 1 cut(s) 363
TspGWI ACGGA 1 cut(s) 758
TspRI CASTG 2 cut(s) 806, 1006
VpaK11BI GGWCC 3 cut(s) 28, 40, 806
XapI RAATTY 2 cut(s) 1074, 1117
XceI RCATGY 1 cut(s) 602
XcmI CCANNNNNNNNNTGG 1 cut(s) 242
XmnI GAANNNNTTC 1 cut(s) 636
ZrmI AGTACT 1 cut(s) 50
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.