Rh2DG555800

nucleobase-ascorbate transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0004561
Physical Location & Seq
Reverse (-)
78584255 .. 78590190
5936 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG555800.1

Sequence Viewer

Length: 1449 bp
ATGCTTGGCAAAAGTGTAATGATCCCTTCGTTACTTGTCCCTGCAATGGGTGGAAGTGATGGTGACAAAGCACGAGTAATACAGACTCTCCTTTTTGTTGCTGGAATTAAGACACTTCTCCAAGCACTTTTTGGAACCAGGCTACCTGCTGTAGTTGGAGGCTCCTTTGCTTATGTCATTCCAATAGCCTACATTATAAATGACTCCAAATTGCATCGGATTACTGATGATCATGAAAGATTTATACAAACAATGCGTGCTATCCAAGGAGCTCTAATTGTAGCTTCAAGCATACAAATCATTCTGGGTTACAGCCAAGTTTGGGGTCTCTTCTCACGGTTTTTCAGTCCACTCGGCATGGCACCTGTAGTTGGATTAGTGGGCTTAGGATTCTTTGAACGAGGATTTCCAGAGTTGGGAAAGTGTGTGGAAATTGGACTTCCAATGCTGTTGTTGGTCATCGGGTTTTCTCAATATCTGAAGCATGTGAGACCACTTAGAGATGTCCCTCTCTTTGAACGGTTTCCAGTATTGATTTGTGTCACAATCATTTGGATCTATTCCCTAATCTTAACTGCCGGTGGGGCTTACCGAGACAAACCCAATAAAACCCAAGTCAGCTGTCGTACGGATAGAGCAAATCTCATATCGACTGCCCCATGGTTCAAGTTTCCATATCCGCTGCAGTGGGGTCCACCTACATTTTCTGCTGCTCACTCATTTGCAATGATGTCTGCAGTTCTTGTTTCAATGGTTGAGTCAACTGGCGCATACAAGGCTGCATCGAGATTGGCAATTGCCACTCCTCCTCCTGCTTATGTTTTGAGCCGGGGTATTGGCTGGCAGGGAATCGGTGTTCTGCTTGATGGACTATATGGAACAGGCACTGGTTCAACTGTTTCTGTGGAAAACGTTGGACTCCTTGGACTGACACGGGTTGGAAGTCGGAGAGTTGTTCAAATTTCTGCTGGATTTATGATATTTTTCTCAACCTTAGGTAAATTTGGAGCTGTATTTGCATCTATACCTGCCCCTATATATGCTGCACTATACTGCATTCTCTTCGGCCTCGTGGCTTCAGTGGGATTATCATTTCTTCAATTCACAAATATGAATTCCATGAGAAACCTCATAATTACCGGGCTTTCGCTGTTCCTTGGGATATCAGTCCCCCACTTCTTCAATGAATATTGGAATCCTGTTCATCATGGTCTTGTCCATACCAATGCCGGATGGTTCAATGCATTTTTGAATACGATATTCTCATCTCCTGCTACTGTGGGGTTGATAGTGGCAGTGTTTCTTGATAACACAATAGAGGTAGAAAAAGCAAAGAAAGACAGAGGGATGCCATGGTGGGTTAAGTTCAGAACATTTCGAGGAGACAGCAGAAACGAAGAGTTCTACACTTTGCCGTTTAATCTCAACAGGTTCTTCCCACCTACGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005911 GO:0009506 GO:0030054 GO:0055044
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Xan_ur_permease

Protein Analysis

482

Amino Acids

52.85

Weight (kDa)

9.75

Isoelectric Point (pI)

29.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Xan_ur_permease PF00860 1 - 392 6.4e-64 Permease family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 197
Acc36I ACCTGC 2 cut(s) 154, 1036
AccB1I GGYRCC 1 cut(s) 361
AciI CCGC 1 cut(s) 680
AclI AACGTT 1 cut(s) 912
AclWI GGATC 2 cut(s) 16, 563
AcsI RAATTY 3 cut(s) 960, 1001, 1114
AcuI CTGAAG 2 cut(s) 500, 1062
AfaI GTAC 1 cut(s) 628
AfiI CCNNNNNNNGG 5 cut(s) 46, 47, 322, 371, 416
AjnI CCWGG 1 cut(s) 137
AloI GAACNNNNNNTCC 2 cut(s) 840, 872
AluBI AGCT 4 cut(s) 272, 284, 621, 1010
AluI AGCT 4 cut(s) 272, 284, 621, 1010
Alw21I GWGCWC 1 cut(s) 274
Alw26I GTCTC 4 cut(s) 332, 484, 588, 1377
AlwI GGATC 2 cut(s) 16, 563
AlwNI CAGNNNCTG 1 cut(s) 887
AoxI GGCC 1 cut(s) 1066
ApeKI GCWGC 4 cut(s) 682, 710, 779, 1043
ApoI RAATTY 3 cut(s) 960, 1001, 1114
Asp700I GAANNNNTTC 1 cut(s) 522
AspLEI GCGC 1 cut(s) 770
AspS9I GGNCC 1 cut(s) 692
AsuC2I CCSGG 2 cut(s) 830, 1141
AsuHPI GGTGA 1 cut(s) 74
AvaII GGWCC 1 cut(s) 692
AxyI CCTNAGG 1 cut(s) 994
BanI GGYRCC 1 cut(s) 361
BanII GRGCYC 1 cut(s) 274
BauI CACGAG 2 cut(s) 72, 1070
Bbv12I GWGCWC 1 cut(s) 274
BbvI GCAGC 4 cut(s) 669, 697, 766, 1030
BccI CCATC 3 cut(s) 53, 860, 1227
BceAI ACGGC 1 cut(s) 1399
BcgI CGANNNNNNTGC 2 cut(s) 1045, 1079
BciT130I CCWGG 1 cut(s) 139
BclI TGATCA 1 cut(s) 229
BcnI CCSGG 2 cut(s) 830, 1141
BcoDI GTCTC 4 cut(s) 332, 484, 588, 1377
BfmI CTRYAG 4 cut(s) 150, 366, 683, 735
BfuAI ACCTGC 2 cut(s) 154, 1036
BglI GCCNNNNNGGC 1 cut(s) 584
BisI GCNGC 4 cut(s) 683, 711, 780, 1044
BlsI GCNGC 4 cut(s) 684, 712, 781, 1045
Bme1390I CCNGG 3 cut(s) 139, 830, 1141
Bme18I GGWCC 1 cut(s) 692
BmgT120I GGNCC 1 cut(s) 692
BmiI GGNNCC 4 cut(s) 136, 163, 363, 693
BmrFI CCNGG 3 cut(s) 139, 830, 1141
BmsI GCATC 4 cut(s) 223, 791, 1028, 1338
BplI GAGNNNNNCTC 2 cut(s) 627, 659
Bpu10I CCTNAGC 1 cut(s) 385
BpuMI CCSGG 2 cut(s) 830, 1141
BsaAI YACGTR 1 cut(s) 1446
BsaI GGTCTC 2 cut(s) 332, 484
BsaJI CCNNGG 6 cut(s) 265, 659, 829, 922, 1156, 1352
BsaXI ACNNNNNCTCC 4 cut(s) 72, 102, 793, 823
Bsc4I CCNNNNNNNGG 5 cut(s) 46, 47, 322, 371, 416
Bse118I RCCGGY 1 cut(s) 578
Bse1I ACTGG 3 cut(s) 527, 769, 892
Bse21I CCTNAGG 1 cut(s) 994
Bse3DI GCAATG 2 cut(s) 51, 732
BseBI CCWGG 1 cut(s) 139
BseDI CCNNGG 6 cut(s) 265, 659, 829, 922, 1156, 1352
BseGI GGATG 2 cut(s) 1238, 1353
BseLI CCNNNNNNNGG 5 cut(s) 46, 47, 322, 371, 416
BseMI GCAATG 2 cut(s) 51, 732
BseNI ACTGG 3 cut(s) 527, 769, 892
BseRI GAGGAG 3 cut(s) 795, 798, 1395
BseXI GCAGC 4 cut(s) 669, 697, 766, 1030
BsgI GTGCAG 1 cut(s) 1029
BshFI GGCC 1 cut(s) 1068
BshNI GGYRCC 1 cut(s) 361
BsiHKAI GWGCWC 1 cut(s) 274
BsiSI CCGG 4 cut(s) 579, 829, 1140, 1230
BsiWI CGTACG 1 cut(s) 626
BslFI GGGAC 3 cut(s) 23, 491, 1154
BslI CCNNNNNNNGG 5 cut(s) 46, 47, 322, 371, 416
BsmAI GTCTC 4 cut(s) 332, 484, 588, 1377
BsmFI GGGAC 3 cut(s) 23, 491, 1154
BsmI GAATGC 1 cut(s) 1056
BsnI GGCC 1 cut(s) 1068
Bso31I GGTCTC 2 cut(s) 332, 484
Bsp1286I GDGCHC 1 cut(s) 274
Bsp143I GATC 3 cut(s) 21, 229, 555
Bsp19I CCATGG 2 cut(s) 659, 1352
BspACI CCGC 1 cut(s) 680
BspANI GGCC 1 cut(s) 1068
BspHI TCATGA 1 cut(s) 232
BspLI GGNNCC 4 cut(s) 136, 163, 363, 693
BspMAI CTGCAG 2 cut(s) 687, 739
BspMI ACCTGC 2 cut(s) 154, 1036
BspPI GGATC 2 cut(s) 16, 563
BspT107I GGYRCC 1 cut(s) 361
BspTNI GGTCTC 2 cut(s) 332, 484
BsrDI GCAATG 2 cut(s) 51, 732
BsrFI RCCGGY 1 cut(s) 578
BsrI ACTGG 3 cut(s) 527, 769, 892
BssAI RCCGGY 1 cut(s) 578
BssECI CCNNGG 6 cut(s) 265, 659, 829, 922, 1156, 1352
BssMI GATC 3 cut(s) 21, 229, 555
BssSI CACGAG 2 cut(s) 72, 1070
BssT1I CCWWGG 5 cut(s) 265, 659, 922, 1156, 1352
Bst2BI CACGAG 2 cut(s) 72, 1070
Bst2UI CCWGG 1 cut(s) 139
Bst4CI ACNGT 4 cut(s) 339, 522, 898, 1279
Bst6I CTCTTC 3 cut(s) 335, 1067, 1392
BstBAI YACGTR 1 cut(s) 1446
BstC8I GCNNGC 2 cut(s) 258, 842
BstDEI CTNAG 3 cut(s) 385, 497, 994
BstDSI CCRYGG 2 cut(s) 659, 1352
BstF5I GGATG 2 cut(s) 1238, 1353
BstHHI GCGC 1 cut(s) 770
BstKTI GATC 3 cut(s) 24, 232, 558
BstMAI GTCTC 4 cut(s) 332, 484, 588, 1377
BstMBI GATC 3 cut(s) 21, 229, 555
BstMWI GCNNNNNNNGC 3 cut(s) 584, 776, 1016
BstNI CCWGG 1 cut(s) 139
BstNSI RCATGY 1 cut(s) 488
BstSCI CCNGG 3 cut(s) 137, 828, 1139
BstSFI CTRYAG 4 cut(s) 150, 366, 683, 735
BstSNI TACGTA 1 cut(s) 1446
BstV1I GCAGC 4 cut(s) 669, 697, 766, 1030
BstX2I RGATCY 1 cut(s) 555
BstYI RGATCY 1 cut(s) 555
Bsu36I CCTNAGG 1 cut(s) 994
BsuRI GGCC 1 cut(s) 1068
BtgI CCRYGG 2 cut(s) 659, 1352
BtsCI GGATG 2 cut(s) 1238, 1353
BtsI GCAGTG 2 cut(s) 692, 1302
BtsIMutI CAGTG 4 cut(s) 692, 885, 1086, 1302
BveI ACCTGC 2 cut(s) 154, 1036
Cac8I GCNNGC 2 cut(s) 258, 842
CaiI CAGNNNCTG 1 cut(s) 887
CciI TCATGA 1 cut(s) 232
CfoI GCGC 1 cut(s) 770
Cfr10I RCCGGY 1 cut(s) 578
Cfr13I GGNCC 1 cut(s) 692
Csp6I GTAC 1 cut(s) 627
CviAII CATG 7 cut(s) 233, 358, 485, 660, 1120, 1208, 1353
CviQI GTAC 1 cut(s) 627
DdeI CTNAG 3 cut(s) 385, 497, 994
DpnI GATC 3 cut(s) 23, 231, 557
DpnII GATC 3 cut(s) 21, 229, 555
Eam1104I CTCTTC 3 cut(s) 335, 1067, 1392
EarI CTCTTC 3 cut(s) 335, 1067, 1392
Ecl136II GAGCTC 1 cut(s) 272
Eco105I TACGTA 1 cut(s) 1446
Eco130I CCWWGG 5 cut(s) 265, 659, 922, 1156, 1352
Eco24I GRGCYC 1 cut(s) 274
Eco31I GGTCTC 2 cut(s) 332, 484
Eco32I GATATC 1 cut(s) 1164
Eco47I GGWCC 1 cut(s) 692
Eco53kI GAGCTC 1 cut(s) 272
Eco57I CTGAAG 2 cut(s) 500, 1062
Eco81I CCTNAGG 1 cut(s) 994
EcoICRI GAGCTC 1 cut(s) 272
EcoRI GAATTC 1 cut(s) 1114
EcoRII CCWGG 1 cut(s) 137
EcoRV GATATC 1 cut(s) 1164
EcoT14I CCWWGG 5 cut(s) 265, 659, 922, 1156, 1352
EcoT22I ATGCAT 1 cut(s) 1246
EcoT38I GRGCYC 1 cut(s) 274
ErhI CCWWGG 5 cut(s) 265, 659, 922, 1156, 1352
FaeI CATG 7 cut(s) 236, 361, 488, 663, 1123, 1211, 1356
FaqI GGGAC 3 cut(s) 23, 491, 1154
FatI CATG 7 cut(s) 232, 357, 484, 659, 1119, 1207, 1352
FbaI TGATCA 1 cut(s) 229
Fnu4HI GCNGC 4 cut(s) 683, 711, 780, 1044
FokI GGATG 2 cut(s) 1245, 1360
FriOI GRGCYC 1 cut(s) 274
Fsp4HI GCNGC 4 cut(s) 683, 711, 780, 1044
GlaI GCGC 1 cut(s) 769
GluI GCNGC 4 cut(s) 683, 711, 780, 1044
HaeIII GGCC 1 cut(s) 1068
HapII CCGG 4 cut(s) 579, 829, 1140, 1230
HhaI GCGC 1 cut(s) 770
Hin1II CATG 7 cut(s) 236, 361, 488, 663, 1123, 1211, 1356
Hin6I GCGC 1 cut(s) 768
HinP1I GCGC 1 cut(s) 768
HincII GTYRAC 1 cut(s) 762
HindII GTYRAC 1 cut(s) 762
HinfI GANTC 7 cut(s) 85, 203, 390, 758, 849, 918, 1195
HpaII CCGG 4 cut(s) 579, 829, 1140, 1230
HphI GGTGA 1 cut(s) 74
Hpy166II GTNNAC 3 cut(s) 350, 695, 762
Hpy188I TCNGA 4 cut(s) 219, 480, 948, 1370
Hpy188III TCNNGA 4 cut(s) 233, 410, 786, 1304
Hpy8I GTNNAC 3 cut(s) 350, 695, 762
HpyAV CCTTC 1 cut(s) 36
HpyCH4III ACNGT 4 cut(s) 339, 522, 898, 1279
HpyCH4IV ACGT 2 cut(s) 912, 1445
HpyF10VI GCNNNNNNNGC 3 cut(s) 584, 776, 1016
HpyF3I CTNAG 3 cut(s) 385, 497, 994
HpySE526I ACGT 2 cut(s) 912, 1445
Hsp92II CATG 7 cut(s) 236, 361, 488, 663, 1123, 1211, 1356
HspAI GCGC 1 cut(s) 768
Ksp22I TGATCA 1 cut(s) 229
Kzo9I GATC 3 cut(s) 21, 229, 555
LmnI GCTCC 3 cut(s) 167, 269, 1007
Lsp1109I GCAGC 4 cut(s) 669, 697, 766, 1030
LweI GCATC 4 cut(s) 223, 791, 1028, 1338
MaeII ACGT 2 cut(s) 912, 1445
MaeIII GTNAC 4 cut(s) 30, 62, 308, 541
MalI GATC 3 cut(s) 23, 231, 557
MboI GATC 3 cut(s) 21, 229, 555
MboII GAAGA 6 cut(s) 322, 1054, 1088, 1171, 1409, 1426
MfeI CAATTG 1 cut(s) 795
MflI RGATCY 1 cut(s) 555
MhlI GDGCHC 1 cut(s) 274
MlyI GAGTC 4 cut(s) 79, 197, 767, 912
MmeI TCCRAC 5 cut(s) 136, 352, 895, 919, 926
Mph1103I ATGCAT 1 cut(s) 1246
MroXI GAANNNNTTC 1 cut(s) 522
MseI TTAA 4 cut(s) 108, 572, 1362, 1419
MslI CAYNNNNRTG 2 cut(s) 1109, 1224
MspA1I CMGCKG 2 cut(s) 621, 682
MspI CCGG 4 cut(s) 579, 829, 1140, 1230
MspR9I CCNGG 3 cut(s) 139, 830, 1141
MunI CAATTG 1 cut(s) 795
Mva1269I GAATGC 1 cut(s) 1056
MvaI CCWGG 1 cut(s) 139
MwoI GCNNNNNNNGC 3 cut(s) 584, 776, 1016
NciI CCSGG 2 cut(s) 830, 1141
NcoI CCATGG 2 cut(s) 659, 1352
NdeII GATC 3 cut(s) 21, 229, 555
NlaIII CATG 7 cut(s) 236, 361, 488, 663, 1123, 1211, 1356
NlaIV GGNNCC 4 cut(s) 136, 163, 363, 693
NmeAIII GCCGAG 1 cut(s) 333
NmuCI GTSAC 2 cut(s) 62, 541
NsiI ATGCAT 1 cut(s) 1246
NspI RCATGY 1 cut(s) 488
PagI TCATGA 1 cut(s) 232
PctI GAATGC 1 cut(s) 1056
PdmI GAANNNNTTC 1 cut(s) 522
PfeI GAWTC 3 cut(s) 390, 849, 1195
Pfl23II CGTACG 1 cut(s) 626
PkrI GCNGC 4 cut(s) 684, 712, 781, 1045
PleI GAGTC 4 cut(s) 79, 197, 766, 912
PpsI GAGTC 4 cut(s) 79, 197, 766, 912
Ppu21I YACGTR 1 cut(s) 1446
PsiI TTATAA 1 cut(s) 197
Psp124BI GAGCTC 1 cut(s) 274
Psp1406I AACGTT 1 cut(s) 912
Psp6I CCWGG 1 cut(s) 137
PspGI CCWGG 1 cut(s) 137
PspLI CGTACG 1 cut(s) 626
PspN4I GGNNCC 4 cut(s) 136, 163, 363, 693
PspPI GGNCC 1 cut(s) 692
PstI CTGCAG 2 cut(s) 687, 739
PstNI CAGNNNCTG 1 cut(s) 887
PsuI RGATCY 1 cut(s) 555
PvuII CAGCTG 1 cut(s) 621
RsaI GTAC 1 cut(s) 628
RsaNI GTAC 1 cut(s) 627
RseI CAYNNNNRTG 2 cut(s) 1109, 1224
SacI GAGCTC 1 cut(s) 274
SaqAI TTAA 4 cut(s) 108, 572, 1362, 1419
SatI GCNGC 4 cut(s) 683, 711, 780, 1044
Sau3AI GATC 3 cut(s) 21, 229, 555
Sau96I GGNCC 1 cut(s) 692
SchI GAGTC 4 cut(s) 79, 197, 767, 912
ScrFI CCNGG 3 cut(s) 139, 830, 1141
SduI GDGCHC 1 cut(s) 274
SfaNI GCATC 4 cut(s) 223, 791, 1028, 1338
SfcI CTRYAG 4 cut(s) 150, 366, 683, 735
SinI GGWCC 1 cut(s) 692
SmiMI CAYNNNNRTG 2 cut(s) 1109, 1224
SnaBI TACGTA 1 cut(s) 1446
SsiI CCGC 1 cut(s) 680
SspI AATATT 1 cut(s) 1190
SstI GAGCTC 1 cut(s) 274
StyD4I CCNGG 3 cut(s) 137, 828, 1139
StyI CCWWGG 5 cut(s) 265, 659, 922, 1156, 1352
TaaI ACNGT 4 cut(s) 339, 522, 898, 1279
TaiI ACGT 2 cut(s) 915, 1448
TaqI TCGA 3 cut(s) 650, 785, 1378
TfiI GAWTC 3 cut(s) 390, 849, 1195
Tru1I TTAA 4 cut(s) 108, 572, 1362, 1419
Tru9I TTAA 4 cut(s) 108, 572, 1362, 1419
TscAI CASTG 4 cut(s) 692, 892, 1086, 1302
TseFI GTSAC 2 cut(s) 62, 541
TseI GCWGC 4 cut(s) 682, 710, 779, 1043
Tsp45I GTSAC 2 cut(s) 62, 541
TspDTI ATGAA 4 cut(s) 249, 1127, 1193, 1200
TspGWI ACGGA 1 cut(s) 644
TspRI CASTG 4 cut(s) 692, 892, 1086, 1302
VpaK11BI GGWCC 1 cut(s) 692
XapI RAATTY 3 cut(s) 960, 1001, 1114
XceI RCATGY 1 cut(s) 488
XcmI CCANNNNNNNNNTGG 1 cut(s) 128
XmnI GAANNNNTTC 1 cut(s) 522
Zsp2I ATGCAT 1 cut(s) 1246
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.