Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007294

Physical Location & Seq

Genomic Coordinates Reverse (-)

3457213 .. 3457479

Gene Structure 267 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G07820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 267 bp

ATGGATGATATGGAGATCTATAACAGGCTGGCGACCATTCCACAAGAAATCGAAGCCGCGGAAAACGCAAAGCTCCACTGGGAGGAAATGCTGGGCTTGTTCTGGGAGCACCCGCCTGCTCTGGACCCGGAATTTGTGGGTGCAAGGATGCAAGTCTTACGGGACCGCATTCGCGGCCTGCAACAAAGGATTTCTGGTCTCCTGCAGGAGCGGAACTACCTAATTGTGTGTACTATCGAACACGCTCTCCAGCGCCAGGGAGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

88

Amino Acids

10.33

Weight (kDa)

4.95

Isoelectric Point (pI)

53.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0007294)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G07820
pyrus_communis	pycom461g00280
rosa_chinensis	RchiOBHm_Chr3g0453191 RchiOBHm_MTg0498941 RchiOBHm_MTg0499231
rosa_laevigata	RLG00000000017 RLG00000000080 RLG00000000124 RLG00000000366 RLG00000000510
rosa_multiflora	Rmu_sc0003983.1_g000010 Rmu_ssc0000163.1_g000002
rosa_roxburghii	Rroxscaffold_2G00119360 Rroxscaffold_2G00119510 Rroxscaffold_5G00359320 Rroxscaffold_6G00430250
rosa_rugosa	Rorug02G0647100 Rorug04G0134600
rosa_samantha	Rh1BG018000 Rh1BG020300 Rh3AG049900 Rh3BG051100 Rh3CG051300 Rh3DG051900 Rh5CG231700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	211
AccII	CGCG	2 cut(s)	59, 174
AciI	CCGC	6 cut(s)	57, 59, 113, 166, 174, 211
AcsI	RAATTY	1 cut(s)	131
AfaI	GTAC	1 cut(s)	232
AfiI	CCNNNNNNNGG	2 cut(s)	82, 256
AjnI	CCWGG	1 cut(s)	255
AloI	GAACNNNNNNTCC	2 cut(s)	231, 263
AluBI	AGCT	1 cut(s)	73
AluI	AGCT	1 cut(s)	73
Alw21I	GWGCWC	1 cut(s)	111
Alw26I	GTCTC	2 cut(s)	203, 255
AoxI	GGCC	1 cut(s)	175
ApoI	RAATTY	1 cut(s)	131
ArsI	GACNNNNNNTTYG	2 cut(s)	116, 148
AspLEI	GCGC	1 cut(s)	255
AspS9I	GGNCC	2 cut(s)	124, 163
AsuC2I	CCSGG	1 cut(s)	128
AvaII	GGWCC	2 cut(s)	124, 163
Bbv12I	GWGCWC	1 cut(s)	111
BciT130I	CCWGG	1 cut(s)	257
BcnI	CCSGG	1 cut(s)	128
BcoDI	GTCTC	2 cut(s)	203, 255
BfaI	CTAG	1 cut(s)	265
BfmI	CTRYAG	1 cut(s)	203
BfoI	RGCGCY	1 cut(s)	256
BglII	AGATCT	1 cut(s)	15
BisI	GCNGC	2 cut(s)	57, 175
BlsI	GCNGC	2 cut(s)	58, 176
Bme1390I	CCNGG	2 cut(s)	128, 257
Bme18I	GGWCC	2 cut(s)	124, 163
BmgT120I	GGNCC	2 cut(s)	124, 163
BmiI	GGNNCC	2 cut(s)	126, 164
BmrFI	CCNGG	2 cut(s)	128, 257
BmrI	ACTGGG	1 cut(s)	88
BmsI	GCATC	1 cut(s)	138
BmuI	ACTGGG	1 cut(s)	88
BpmI	CTGGAG	1 cut(s)	233
BpuMI	CCSGG	1 cut(s)	128
BsaI	GGTCTC	1 cut(s)	203
BsaJI	CCNNGG	2 cut(s)	57, 256
BsaXI	ACNNNNNCTCC	2 cut(s)	231, 261
Bsc4I	CCNNNNNNNGG	2 cut(s)	82, 256
Bse1I	ACTGG	1 cut(s)	83
BseBI	CCWGG	1 cut(s)	257
BseDI	CCNNGG	2 cut(s)	57, 256
BseGI	GGATG	2 cut(s)	10, 153
BseLI	CCNNNNNNNGG	2 cut(s)	82, 256
BseNI	ACTGG	1 cut(s)	83
BseYI	CCCAGC	1 cut(s)	91
Bsh1236I	CGCG	2 cut(s)	59, 174
BshFI	GGCC	1 cut(s)	177
BsiHKAI	GWGCWC	1 cut(s)	111
BsiSI	CCGG	1 cut(s)	128
BslFI	GGGAC	1 cut(s)	176
BslI	CCNNNNNNNGG	2 cut(s)	82, 256
BsmAI	GTCTC	2 cut(s)	203, 255
BsmFI	GGGAC	1 cut(s)	176
BsmI	GAATGC	1 cut(s)	168
BsnI	GGCC	1 cut(s)	177
Bso31I	GGTCTC	1 cut(s)	203
Bsp1286I	GDGCHC	1 cut(s)	111
Bsp143I	GATC	1 cut(s)	15
BspACI	CCGC	6 cut(s)	57, 59, 113, 166, 174, 211
BspANI	GGCC	1 cut(s)	177
BspFNI	CGCG	2 cut(s)	59, 174
BspLI	GGNNCC	2 cut(s)	126, 164
BspMAI	CTGCAG	1 cut(s)	207
BspTNI	GGTCTC	1 cut(s)	203
BsrBI	CCGCTC	1 cut(s)	211
BsrI	ACTGG	1 cut(s)	83
BssECI	CCNNGG	2 cut(s)	57, 256
BssMI	GATC	1 cut(s)	15
Bst2UI	CCWGG	1 cut(s)	257
BstC8I	GCNNGC	3 cut(s)	30, 117, 179
BstDSI	CCRYGG	1 cut(s)	57
BstF5I	GGATG	2 cut(s)	10, 153
BstFNI	CGCG	2 cut(s)	59, 174
BstH2I	RGCGCY	1 cut(s)	256
BstHHI	GCGC	1 cut(s)	255
BstKTI	GATC	1 cut(s)	18
BstMAI	GTCTC	2 cut(s)	203, 255
BstMBI	GATC	1 cut(s)	15
BstMWI	GCNNNNNNNGC	2 cut(s)	65, 174
BstNI	CCWGG	1 cut(s)	257
BstSCI	CCNGG	2 cut(s)	126, 255
BstSFI	CTRYAG	1 cut(s)	203
BstUI	CGCG	2 cut(s)	59, 174
BstX2I	RGATCY	1 cut(s)	15
BstYI	RGATCY	1 cut(s)	15
BsuRI	GGCC	1 cut(s)	177
BtgI	CCRYGG	1 cut(s)	57
BtsCI	GGATG	2 cut(s)	10, 153
BtsIMutI	CAGTG	1 cut(s)	76
Cac8I	GCNNGC	3 cut(s)	30, 117, 179
CfoI	GCGC	1 cut(s)	255
Cfr13I	GGNCC	2 cut(s)	124, 163
Cfr42I	CCGCGG	1 cut(s)	60
Csp6I	GTAC	1 cut(s)	231
CviJI	RGCY	5 cut(s)	28, 56, 73, 96, 177
CviKI_1	RGCY	5 cut(s)	28, 56, 73, 96, 177
CviQI	GTAC	1 cut(s)	231
DpnI	GATC	1 cut(s)	17
DpnII	GATC	1 cut(s)	15
Eco31I	GGTCTC	1 cut(s)	203
Eco47I	GGWCC	2 cut(s)	124, 163
EcoRII	CCWGG	1 cut(s)	255
FaiI	YATR	2 cut(s)	11, 21
FaqI	GGGAC	1 cut(s)	176
FauI	CCCGC	1 cut(s)	120
Fnu4HI	GCNGC	2 cut(s)	57, 175
FokI	GGATG	2 cut(s)	17, 160
Fsp4HI	GCNGC	2 cut(s)	57, 175
FspBI	CTAG	1 cut(s)	265
GlaI	GCGC	1 cut(s)	254
GluI	GCNGC	2 cut(s)	57, 175
GsaI	CCCAGC	1 cut(s)	95
GsuI	CTGGAG	1 cut(s)	233
HaeII	RGCGCY	1 cut(s)	256
HaeIII	GGCC	1 cut(s)	177
HapII	CCGG	1 cut(s)	128
HhaI	GCGC	1 cut(s)	255
Hin6I	GCGC	1 cut(s)	253
HinP1I	GCGC	1 cut(s)	253
HpaII	CCGG	1 cut(s)	128
Hpy166II	GTNNAC	1 cut(s)	231
Hpy188III	TCNNGA	1 cut(s)	122
Hpy8I	GTNNAC	1 cut(s)	231
HpyCH4V	TGCA	4 cut(s)	143, 151, 181, 205
HpyF10VI	GCNNNNNNNGC	2 cut(s)	65, 174
HspAI	GCGC	1 cut(s)	253
KspI	CCGCGG	1 cut(s)	60
Kzo9I	GATC	1 cut(s)	15
LmnI	GCTCC	3 cut(s)	78, 106, 208
LweI	GCATC	1 cut(s)	138
MaeI	CTAG	1 cut(s)	265
MalI	GATC	1 cut(s)	17
MbiI	CCGCTC	1 cut(s)	211
MboI	GATC	1 cut(s)	15
MflI	RGATCY	1 cut(s)	15
MhlI	GDGCHC	1 cut(s)	111
MluCI	AATT	2 cut(s)	131, 222
MnlI	CCTC	1 cut(s)	76
MspA1I	CMGCKG	1 cut(s)	59
MspI	CCGG	1 cut(s)	128
MspR9I	CCNGG	2 cut(s)	128, 257
Mva1269I	GAATGC	1 cut(s)	168
MvaI	CCWGG	1 cut(s)	257
MvnI	CGCG	2 cut(s)	59, 174
MwoI	GCNNNNNNNGC	2 cut(s)	65, 174
NciI	CCSGG	1 cut(s)	128
NdeII	GATC	1 cut(s)	15
NlaIV	GGNNCC	2 cut(s)	126, 164
PctI	GAATGC	1 cut(s)	168
PkrI	GCNGC	2 cut(s)	58, 176
Psp6I	CCWGG	1 cut(s)	255
PspFI	CCCAGC	1 cut(s)	91
PspGI	CCWGG	1 cut(s)	255
PspN4I	GGNNCC	2 cut(s)	126, 164
PspPI	GGNCC	2 cut(s)	124, 163
PstI	CTGCAG	1 cut(s)	207
PsuI	RGATCY	1 cut(s)	15
RsaI	GTAC	1 cut(s)	232
RsaNI	GTAC	1 cut(s)	231
SacII	CCGCGG	1 cut(s)	60
SatI	GCNGC	2 cut(s)	57, 175
Sau3AI	GATC	1 cut(s)	15
Sau96I	GGNCC	2 cut(s)	124, 163
SbfI	CCTGCAGG	1 cut(s)	207
ScrFI	CCNGG	2 cut(s)	128, 257
SdaI	CCTGCAGG	1 cut(s)	207
SduI	GDGCHC	1 cut(s)	111
SetI	ASST	2 cut(s)	75, 222
SfaNI	GCATC	1 cut(s)	138
SfcI	CTRYAG	1 cut(s)	203
Sfr303I	CCGCGG	1 cut(s)	60
SgrBI	CCGCGG	1 cut(s)	60
SinI	GGWCC	2 cut(s)	124, 163
Sse8387I	CCTGCAGG	1 cut(s)	207
Sse9I	AATT	2 cut(s)	131, 222
SsiI	CCGC	6 cut(s)	57, 59, 113, 166, 174, 211
SspMI	CTAG	1 cut(s)	265
StyD4I	CCNGG	2 cut(s)	126, 255
TaqI	TCGA	2 cut(s)	51, 237
TasI	AATT	2 cut(s)	131, 222
TatI	WGTACW	1 cut(s)	230
TauI	GCSGC	2 cut(s)	59, 177
TscAI	CASTG	1 cut(s)	83
TspRI	CASTG	1 cut(s)	83
VpaK11BI	GGWCC	2 cut(s)	124, 163
XapI	RAATTY	1 cut(s)	131
XspI	CTAG	1 cut(s)	265

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.