Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Unknown

Orthogroup ID

OG0007294

Physical Location & Seq

Genomic Coordinates Forward (+)

432789 .. 433717

Gene Structure 929 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000000080

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGGCCCAGCGACTTGCTGAAATTAACGTTGAAATACAAAATGTAGAAAATGCTCTTCGAAATACTCGAAGAATGTTAAATGGTTTCTTGAGGCATCTTCGCTCCGTGAACCCGGCTGCTATTGAAGCCCGAATGGAAGCAAGCCGTCAAAGAATTCGGGAACTAGAAGAAAGACTCCAGGGACTACGCCAGGAGCAGCAGGCACTGATCGTGGAGGCAATCTGCCTTGAATTACTACAATCCCTTGTAGAGAAAGGTGGGTTAACTAACGAAAGAAAGATGGAACCAGATGCATTCTTAAAAGAAAGCGCTTTGCCTTACCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

109

Amino Acids

12.48

Weight (kDa)

6.61

Isoelectric Point (pI)

68.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007294)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G07820
pyrus_communis	pycom461g00280
rosa_chinensis	RchiOBHm_Chr3g0453191 RchiOBHm_MTg0498941 RchiOBHm_MTg0499231
rosa_laevigata	RLG00000000017 RLG00000000080 RLG00000000124 RLG00000000366 RLG00000000510
rosa_multiflora	Rmu_sc0003983.1_g000010 Rmu_ssc0000163.1_g000002
rosa_roxburghii	Rroxscaffold_2G00119360 Rroxscaffold_2G00119510 Rroxscaffold_5G00359320 Rroxscaffold_6G00430250
rosa_rugosa	Rorug02G0647100 Rorug04G0134600
rosa_samantha	Rh1BG018000 Rh1BG020300 Rh3AG049900 Rh3BG051100 Rh3CG051300 Rh3DG051900 Rh5CG231700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	27
AcsI	RAATTY	1 cut(s)	153
AfeI	AGCGCT	1 cut(s)	310
AgsI	TTSAA	3 cut(s)	32, 125, 230
AjnI	CCWGG	2 cut(s)	177, 189
AlwNI	CAGNNNCTG	1 cut(s)	205
Aor51HI	AGCGCT	1 cut(s)	310
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	2 cut(s)	116, 196
ApoI	RAATTY	1 cut(s)	153
AspLEI	GCGC	1 cut(s)	311
AspS9I	GGNCC	1 cut(s)	4
AsuC2I	CCSGG	1 cut(s)	113
AsuII	TTCGAA	1 cut(s)	58
BbvI	GCAGC	2 cut(s)	103, 208
BccI	CCATC	1 cut(s)	274
BceAI	ACGGC	1 cut(s)	129
BciT130I	CCWGG	2 cut(s)	179, 191
BcnI	CCSGG	1 cut(s)	113
BfaI	CTAG	1 cut(s)	164
BfoI	RGCGCY	1 cut(s)	312
BisI	GCNGC	2 cut(s)	117, 197
BlsI	GCNGC	2 cut(s)	118, 198
Bme1390I	CCNGG	3 cut(s)	113, 179, 191
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	1 cut(s)	285
BmrFI	CCNGG	3 cut(s)	113, 179, 191
BmsI	GCATC	2 cut(s)	103, 280
BpmI	CTGGAG	1 cut(s)	161
Bpu14I	TTCGAA	1 cut(s)	58
BpuEI	CTTGAG	1 cut(s)	109
BpuMI	CCSGG	1 cut(s)	113
BsaJI	CCNNGG	1 cut(s)	178
BseBI	CCWGG	2 cut(s)	179, 191
BseDI	CCNNGG	1 cut(s)	178
BseXI	GCAGC	2 cut(s)	103, 208
BseYI	CCCAGC	1 cut(s)	6
BshFI	GGCC	1 cut(s)	5
BsiSI	CCGG	1 cut(s)	113
BslFI	GGGAC	1 cut(s)	195
BsmFI	GGGAC	1 cut(s)	195
BsmI	GAATGC	1 cut(s)	293
BsnI	GGCC	1 cut(s)	5
Bsp119I	TTCGAA	1 cut(s)	58
Bsp143I	GATC	1 cut(s)	207
BspANI	GGCC	1 cut(s)	5
BspLI	GGNNCC	1 cut(s)	285
BspQI	GCTCTTC	1 cut(s)	60
BspT104I	TTCGAA	1 cut(s)	58
BssECI	CCNNGG	1 cut(s)	178
BssMI	GATC	1 cut(s)	207
Bst2UI	CCWGG	2 cut(s)	179, 191
Bst6I	CTCTTC	1 cut(s)	60
BstBI	TTCGAA	1 cut(s)	58
BstC8I	GCNNGC	2 cut(s)	142, 201
BstH2I	RGCGCY	1 cut(s)	312
BstHHI	GCGC	1 cut(s)	311
BstKTI	GATC	1 cut(s)	210
BstMBI	GATC	1 cut(s)	207
BstMWI	GCNNNNNNNGC	1 cut(s)	125
BstNI	CCWGG	2 cut(s)	179, 191
BstSCI	CCNGG	3 cut(s)	111, 177, 189
BstV1I	GCAGC	2 cut(s)	103, 208
BsuRI	GGCC	1 cut(s)	5
BtsIMutI	CAGTG	1 cut(s)	203
Cac8I	GCNNGC	2 cut(s)	142, 201
CaiI	CAGNNNCTG	1 cut(s)	205
CfoI	GCGC	1 cut(s)	311
Cfr13I	GGNCC	1 cut(s)	4
CviJI	RGCY	4 cut(s)	5, 116, 128, 144
CviKI_1	RGCY	4 cut(s)	5, 116, 128, 144
DpnI	GATC	1 cut(s)	209
DpnII	GATC	1 cut(s)	207
Eam1104I	CTCTTC	1 cut(s)	60
EarI	CTCTTC	1 cut(s)	60
Eco47III	AGCGCT	1 cut(s)	310
EcoRI	GAATTC	1 cut(s)	153
EcoRII	CCWGG	2 cut(s)	177, 189
EcoT22I	ATGCAT	1 cut(s)	295
FaiI	YATR	1 cut(s)	325
FaqI	GGGAC	1 cut(s)	195
Fnu4HI	GCNGC	2 cut(s)	117, 197
Fsp4HI	GCNGC	2 cut(s)	117, 197
FspBI	CTAG	1 cut(s)	164
GlaI	GCGC	1 cut(s)	310
GluI	GCNGC	2 cut(s)	117, 197
GsaI	CCCAGC	1 cut(s)	10
GsuI	CTGGAG	1 cut(s)	161
HaeII	RGCGCY	1 cut(s)	312
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	1 cut(s)	113
HhaI	GCGC	1 cut(s)	311
Hin6I	GCGC	1 cut(s)	309
HinP1I	GCGC	1 cut(s)	309
HincII	GTYRAC	1 cut(s)	264
HindII	GTYRAC	1 cut(s)	264
HinfI	GANTC	1 cut(s)	174
HpaI	GTTAAC	1 cut(s)	264
HpaII	CCGG	1 cut(s)	113
Hpy166II	GTNNAC	2 cut(s)	109, 264
Hpy188III	TCNNGA	2 cut(s)	88, 158
Hpy8I	GTNNAC	2 cut(s)	109, 264
HpyCH4IV	ACGT	1 cut(s)	27
HpyCH4V	TGCA	1 cut(s)	293
HpyF10VI	GCNNNNNNNGC	1 cut(s)	125
HpySE526I	ACGT	1 cut(s)	27
HspAI	GCGC	1 cut(s)	309
KspAI	GTTAAC	1 cut(s)	264
Kzo9I	GATC	1 cut(s)	207
LguI	GCTCTTC	1 cut(s)	60
LmnI	GCTCC	2 cut(s)	107, 193
LpnPI	CCDG	8 cut(s)	20, 126, 164, 176, 185, 191, 203, 300
Lsp1109I	GCAGC	2 cut(s)	103, 208
LweI	GCATC	2 cut(s)	103, 280
MaeI	CTAG	1 cut(s)	164
MaeII	ACGT	1 cut(s)	27
MalI	GATC	1 cut(s)	209
MboI	GATC	1 cut(s)	207
MboII	GAAGA	4 cut(s)	47, 81, 89, 179
MluCI	AATT	3 cut(s)	21, 153, 230
MlyI	GAGTC	1 cut(s)	168
MnlI	CCTC	2 cut(s)	84, 208
Mph1103I	ATGCAT	1 cut(s)	295
MseI	TTAA	4 cut(s)	24, 77, 263, 299
MspI	CCGG	1 cut(s)	113
MspR9I	CCNGG	3 cut(s)	113, 179, 191
Mva1269I	GAATGC	1 cut(s)	293
MvaI	CCWGG	2 cut(s)	179, 191
MwoI	GCNNNNNNNGC	1 cut(s)	125
NciI	CCSGG	1 cut(s)	113
NdeII	GATC	1 cut(s)	207
NlaIV	GGNNCC	1 cut(s)	285
NsiI	ATGCAT	1 cut(s)	295
NspV	TTCGAA	1 cut(s)	58
PciSI	GCTCTTC	1 cut(s)	60
PcsI	WCGNNNNNNNCGW	1 cut(s)	64
PctI	GAATGC	1 cut(s)	293
PkrI	GCNGC	2 cut(s)	118, 198
PleI	GAGTC	1 cut(s)	168
PpsI	GAGTC	1 cut(s)	168
Psp1406I	AACGTT	1 cut(s)	27
Psp6I	CCWGG	2 cut(s)	177, 189
PspFI	CCCAGC	1 cut(s)	6
PspGI	CCWGG	2 cut(s)	177, 189
PspN4I	GGNNCC	1 cut(s)	285
PspPI	GGNCC	1 cut(s)	4
PstNI	CAGNNNCTG	1 cut(s)	205
SapI	GCTCTTC	1 cut(s)	60
SaqAI	TTAA	4 cut(s)	24, 77, 263, 299
SatI	GCNGC	2 cut(s)	117, 197
Sau3AI	GATC	1 cut(s)	207
Sau96I	GGNCC	1 cut(s)	4
SchI	GAGTC	1 cut(s)	168
ScrFI	CCNGG	3 cut(s)	113, 179, 191
SetI	ASST	3 cut(s)	30, 259, 324
SfaNI	GCATC	2 cut(s)	103, 280
SfuI	TTCGAA	1 cut(s)	58
SmlI	CTYRAG	1 cut(s)	88
SmoI	CTYRAG	1 cut(s)	88
Sse9I	AATT	3 cut(s)	21, 153, 230
SspMI	CTAG	1 cut(s)	164
StyD4I	CCNGG	3 cut(s)	111, 177, 189
TaiI	ACGT	1 cut(s)	30
TaqI	TCGA	2 cut(s)	58, 67
TasI	AATT	3 cut(s)	21, 153, 230
Tru1I	TTAA	4 cut(s)	24, 77, 263, 299
Tru9I	TTAA	4 cut(s)	24, 77, 263, 299
TscAI	CASTG	1 cut(s)	210
TseI	GCWGC	2 cut(s)	116, 196
TspGWI	ACGGA	1 cut(s)	94
TspRI	CASTG	1 cut(s)	210
XapI	RAATTY	1 cut(s)	153
XspI	CTAG	1 cut(s)	164
Zsp2I	ATGCAT	1 cut(s)	295

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.